Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005905

Physical Location & Seq

Genomic Coordinates Reverse (-)

43614439 .. 43615812

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGTATAGAGAAGATTTATTTAGTAATTGATCAAAATGTGAATTGGTTAATGCACAGAACTTTTGAGGGGGTTTCTCAGCATGGTCACAAAGGTAGTCCACTTGCTATGACCATAATAAAAAGCATGTTTACTATGAACATAGAAGACAAGGAGATACTCGAGAAGCAGATGCATGGCATCGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGAAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATAGCTCTGCACTGGGAGAATCAGCAAAATGAAGCGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCAACTCCCATCATAATGGCTCTATCAAGGCTGATATTGCTGATAAGGATCAACTTGCAAAAGAACAGAGCAAAGGAGAGGCATTATCAGCTGTTGTATATGGAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.16

Weight (kDa)

5.64

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06640 FvH4_3g06680
pyrus_communis	pycom03g06710
rosa_chinensis	RchiOBHm_Chr7g0185271
rosa_laevigata	RLG00000030277
rosa_multiflora	Rmu_sc0000605.1_g000028
rosa_roxburghii	Rroxscaffold_1G00051070 Rroxscaffold_3G00258470
rosa_rugosa	Rorug04G0137600
rosa_samantha	Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600
rosa_wichuraiana	Rw3G028160 Rw5G040880 Rw7G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	284
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	250, 391
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	223, 320, 491
AluI	AGCT	3 cut(s)	223, 320, 491
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	161
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	162, 189
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	4 cut(s)	263, 295, 304, 336
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	355, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 391
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	355, 390
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	250, 391
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	250, 391
BsnI	GGCC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	31, 448
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	91
BspPI	GGATC	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	355, 390
BssMI	GATC	2 cut(s)	31, 448
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	78, 364
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	34, 451
BstMBI	GATC	2 cut(s)	31, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 488
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	389
BtgZI	GCGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	352
CviAII	CATG	3 cut(s)	83, 127, 176
CviJI	RGCY	8 cut(s)	223, 265, 308, 320, 389, 420, 431, 491
CviKI_1	RGCY	8 cut(s)	223, 265, 308, 320, 389, 420, 431, 491
DdeI	CTNAG	2 cut(s)	78, 364
DpnI	GATC	2 cut(s)	33, 450
DpnII	GATC	2 cut(s)	31, 448
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	390
Eco47III	AGCGCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	86, 130, 179
FatI	CATG	3 cut(s)	82, 126, 175
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	214
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	86, 130, 179
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	239, 334, 360
Hpy166II	GTNNAC	3 cut(s)	101, 132, 215
Hpy188I	TCNGA	2 cut(s)	253, 356
Hpy188III	TCNNGA	2 cut(s)	163, 302
Hpy8I	GTNNAC	3 cut(s)	101, 132, 215
HpyCH4V	TGCA	4 cut(s)	55, 175, 325, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 488
HpyF3I	CTNAG	2 cut(s)	78, 364
Hsp92II	CATG	3 cut(s)	86, 130, 179
HspAI	GCGC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 448
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	4 cut(s)	287, 313, 371, 398
LweI	GCATC	2 cut(s)	162, 189
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	33, 450
MboI	GATC	2 cut(s)	31, 448
MboII	GAAGA	5 cut(s)	25, 158, 240, 244, 290
MluCI	AATT	4 cut(s)	27, 43, 200, 283
MnlI	CCTC	5 cut(s)	61, 265, 298, 350, 472
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	3 cut(s)	50, 227, 374
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	437, 488
NdeII	GATC	2 cut(s)	31, 448
NlaIII	CATG	3 cut(s)	86, 130, 179
NmuCI	GTSAC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	239, 334, 360
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	50, 227, 374
Sau3AI	GATC	2 cut(s)	31, 448
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	4 cut(s)	97, 225, 322, 493
SfaNI	GCATC	2 cut(s)	162, 189
SfcI	CTRYAG	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	27, 43, 200, 283
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	390
TaqI	TCGA	1 cut(s)	162
TasI	AATT	4 cut(s)	27, 43, 200, 283
TfiI	GAWTC	3 cut(s)	239, 334, 360
Tru1I	TTAA	3 cut(s)	50, 227, 374
Tru9I	TTAA	3 cut(s)	50, 227, 374
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	152, 245, 360
TspRI	CASTG	1 cut(s)	332
XceI	RCATGY	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.