Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005905

Physical Location & Seq

Genomic Coordinates Reverse (-)

66345116 .. 66353472

Gene Structure 8357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG475200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTCACAAAGGAAGACAAGGAGATACTCGAGAAACAGATGCATGGCATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTATTTGAGGAAAACTCTCATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATAGCTCTGCACTGGGAGAATCAGCAAAATGAAGCGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCAACTCCCATCATAATGGCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAAATGCATTATCAGCTGTTATAATCGTTAGCCGGGACGTGCTGACGTTACTTATACGTAACTCTCAAAGCTCATTGCCTGACCTTGAGCTATCTCATGCAAAGAGCAATTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.56

Weight (kDa)

5.51

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06640 FvH4_3g06680
pyrus_communis	pycom03g06710
rosa_chinensis	RchiOBHm_Chr7g0185271
rosa_laevigata	RLG00000030277
rosa_multiflora	Rmu_sc0000605.1_g000028
rosa_roxburghii	Rroxscaffold_1G00051070 Rroxscaffold_3G00258470
rosa_rugosa	Rorug04G0137600
rosa_samantha	Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600
rosa_wichuraiana	Rw3G028160 Rw5G040880 Rw7G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	118, 259
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	5 cut(s)	91, 188, 341, 396, 415
AluI	AGCT	5 cut(s)	91, 188, 341, 396, 415
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	29
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	359
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	254, 359
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	254, 359
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	4 cut(s)	131, 163, 172, 204
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	223, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 259
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	223, 258
BseLI	CCNNNNNNNGG	2 cut(s)	118, 259
BseMI	GCAATG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	118, 259
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	223, 258
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 357
BstSFI	CTRYAG	1 cut(s)	54
BstSNI	TACGTA	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	193
CfoI	GCGC	1 cut(s)	220
CviAII	CATG	3 cut(s)	44, 49, 422
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco105I	TACGTA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	258
Eco47III	AGCGCT	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	2 cut(s)	45, 334
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	47, 52, 425
FaiI	YATR	8 cut(s)	45, 50, 179, 185, 282, 347, 380, 423
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	3 cut(s)	43, 48, 421
FblI	GTMKAC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	47, 52, 425
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	3 cut(s)	107, 202, 228
HpaII	CCGG	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	121, 224
Hpy188III	TCNNGA	2 cut(s)	31, 170
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4IV	ACGT	3 cut(s)	363, 371, 382
HpyCH4V	TGCA	5 cut(s)	43, 193, 308, 332, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	3 cut(s)	363, 371, 382
Hsp92II	CATG	3 cut(s)	47, 52, 425
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	155, 181, 239, 266, 371, 417
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	3 cut(s)	363, 371, 382
MaeIII	GTNAC	3 cut(s)	4, 372, 383
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	26, 108, 158
MluCI	AATT	2 cut(s)	68, 433
MnlI	CCTC	3 cut(s)	133, 166, 218
Mph1103I	ATGCAT	2 cut(s)	45, 334
MseI	TTAA	2 cut(s)	95, 242
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	2 cut(s)	254, 359
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	47, 52, 425
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	2 cut(s)	45, 334
PaeR7I	CTCGAG	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	107, 202, 228
Ppu21I	YACGTR	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	95, 242
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	254, 359
SetI	ASST	9 cut(s)	93, 190, 343, 366, 374, 385, 398, 411, 417
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	29, 410
SmoI	CTYRAG	2 cut(s)	29, 410
SnaBI	TACGTA	1 cut(s)	383
Sse9I	AATT	2 cut(s)	68, 433
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	252, 357
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	3 cut(s)	366, 374, 385
TaqI	TCGA	2 cut(s)	30, 438
TasI	AATT	2 cut(s)	68, 433
TfiI	GAWTC	3 cut(s)	107, 202, 228
Tru1I	TTAA	2 cut(s)	95, 242
Tru9I	TTAA	2 cut(s)	95, 242
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	2 cut(s)	45, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.