Rh3BG021700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005905
Physical Location & Seq
Forward (+)
1379570 .. 1383126
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG021700.1

Sequence Viewer

Length: 399 bp
ATGGCTATGGGGGAGTGTGAAGAGAAGAAAGTTGTGCATCAAGTGTCAGACAAAGTGGCCAGCAAGGGATTTTCAGTAATTGATTCCCAATCTTCGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATACCTCTGCACTGGGAGAATCAGGTGAAAGACTATCTTAAGCAAAATGAAGCGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATCATAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

5.2

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 2 cut(s) 128, 336
AfeI AGCGCT 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 94, 253, 331
AflII CTTAAG 1 cut(s) 197
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 2 cut(s) 302, 377
AluI AGCT 2 cut(s) 302, 377
AlwI GGATC 1 cut(s) 342
Aor51HI AGCGCT 1 cut(s) 213
AoxI GGCC 2 cut(s) 57, 249
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 196
BalI TGGCCA 1 cut(s) 59
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 181
BplI GAGNNNNNCTC 4 cut(s) 107, 139, 148, 180
BsaJI CCNNGG 2 cut(s) 217, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 253, 331
Bse1I ACTGG 2 cut(s) 176, 298
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 217, 252
BseLI CCNNNNNNNGG 3 cut(s) 94, 253, 331
BseNI ACTGG 2 cut(s) 176, 298
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 59, 251
BslI CCNNNNNNNGG 3 cut(s) 94, 253, 331
BsnI GGCC 2 cut(s) 59, 251
Bsp143I GATC 1 cut(s) 334
BspANI GGCC 2 cut(s) 59, 251
BspPI GGATC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 197
BsrI ACTGG 2 cut(s) 176, 298
BssECI CCNNGG 2 cut(s) 217, 252
BssMI GATC 1 cut(s) 334
BssNAI GTATAC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 252
Bst1107I GTATAC 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 15, 147
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 278
BstZ17I GTATAC 1 cut(s) 161
BsuRI GGCC 2 cut(s) 59, 251
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 214
CviJI RGCY 8 cut(s) 5, 59, 109, 152, 251, 282, 302, 377
CviKI_1 RGCY 8 cut(s) 5, 59, 109, 152, 251, 282, 302, 377
DdeI CTNAG 1 cut(s) 226
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 15, 147
EarI CTCTTC 2 cut(s) 15, 147
Eco130I CCWWGG 1 cut(s) 252
Eco47III AGCGCT 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 128, 336
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaiI YATR 7 cut(s) 8, 155, 161, 276, 309, 385, 387
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FblI GTMKAC 1 cut(s) 160
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 59, 251
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 83, 178, 222, 266
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 3 cut(s) 49, 97, 218
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 37, 169, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 226
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 8 cut(s) 73, 131, 157, 167, 233, 260, 279, 327
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 4 cut(s) 32, 37, 84, 134
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 2 cut(s) 78, 127
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 6 cut(s) 109, 142, 174, 212, 358, 383
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 198, 236
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 83, 178, 222
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 198, 236
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 248
SetI ASST 5 cut(s) 166, 186, 304, 316, 379
SfaNI GCATC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 78, 127
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 252
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 78, 127
TfiI GAWTC 3 cut(s) 83, 178, 222
Tru1I TTAA 2 cut(s) 198, 236
Tru9I TTAA 2 cut(s) 198, 236
TscAI CASTG 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 1 cut(s) 176
Vha464I CTTAAG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.