Rh6DG366200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005905
Physical Location & Seq
Reverse (-)
56293321 .. 56294968
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG366200.1

Sequence Viewer

Length: 411 bp
ATGGTGCCCCTCCACATGGAAGAGAAGGAGATACTCGAGAAGCAGACGCATGGCATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCTCAATCTTCGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATGTAGTTCTCTTCAGGAGGCTATGAGTATAGCTCTGCACTGGGAGAATCAGTATTATGAAGCGCTCCAAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATCATAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.35

Weight (kDa)

4.83

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 88
AclWI GGATC 1 cut(s) 354
AcuI CTGAAG 2 cut(s) 158, 348
AfeI AGCGCT 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 16, 265
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 97, 194, 314, 389
AluI AGCT 4 cut(s) 97, 194, 314, 389
AlwI GGATC 1 cut(s) 354
Ama87I CYCGRG 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 225
AoxI GGCC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 260
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BplI GAGNNNNNCTC 4 cut(s) 137, 169, 178, 210
BsaJI CCNNGG 2 cut(s) 229, 264
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 265
Bse1I ACTGG 2 cut(s) 206, 310
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 229, 264
BseLI CCNNNNNNNGG 2 cut(s) 16, 265
BseNI ACTGG 2 cut(s) 206, 310
BseSI GKGCMC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 16, 265
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 346
BspANI GGCC 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 206, 310
BssECI CCNNGG 2 cut(s) 229, 264
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 2 cut(s) 229, 264
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 15, 177
BstDEI CTNAG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 226
CseI GACGC 1 cut(s) 55
CviAII CATG 3 cut(s) 16, 50, 55
CviJI RGCY 9 cut(s) 59, 97, 139, 182, 194, 263, 294, 314, 389
CviKI_1 RGCY 9 cut(s) 59, 97, 139, 182, 194, 263, 294, 314, 389
DdeI CTNAG 1 cut(s) 238
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 15, 177
EarI CTCTTC 2 cut(s) 15, 177
Eco130I CCWWGG 2 cut(s) 229, 264
Eco47III AGCGCT 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 158, 348
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 229, 264
ErhI CCWWGG 2 cut(s) 229, 264
FaeI CATG 3 cut(s) 19, 53, 58
FatI CATG 3 cut(s) 15, 49, 54
FblI GTMKAC 1 cut(s) 88
GlaI GCGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 1 cut(s) 263
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 19, 53, 58
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 4 cut(s) 113, 208, 234, 278
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 37, 176
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 199, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 238
Hsp92II CATG 3 cut(s) 19, 53, 58
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 6 cut(s) 161, 187, 245, 272, 291, 339
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 3 cut(s) 32, 114, 164
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 74, 157
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 4 cut(s) 20, 139, 172, 370
MseI TTAA 2 cut(s) 101, 248
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 346
NlaIII CATG 3 cut(s) 19, 53, 58
NlaIV GGNNCC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 35
PfeI GAWTC 3 cut(s) 113, 208, 234
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 101, 248
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 99, 196, 316, 328, 391
SfcI CTRYAG 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 35
SlaI CTCGAG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 2 cut(s) 74, 157
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 2 cut(s) 229, 264
TaqI TCGA 2 cut(s) 36, 276
TasI AATT 2 cut(s) 74, 157
TfiI GAWTC 3 cut(s) 113, 208, 234
Tru1I TTAA 2 cut(s) 101, 248
Tru9I TTAA 2 cut(s) 101, 248
TscAI CASTG 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.