Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005905

Physical Location & Seq

Genomic Coordinates Forward (+)

5368849 .. 5370444

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTGTTACCCCCTGGTTCTTTTATTGCAGAAGTGTCAGACAAAGTGGCCAGCAAGGGAATTTCAATAGAAGACAAGGAGATACTCGAGAAGAAGATGCATGGCATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATAGCTTTGCACTGGGAGAATCCGGTGAAAGACTATCTTAAGCAAAATGAAGTGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAGGGGGTTGCTCGACTCTCATCATAATGGCTCTAACAAGACTGGTTTAGCGGAATATACACCTAAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.62

Weight (kDa)

5.44

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06640 FvH4_3g06680
pyrus_communis	pycom03g06710
rosa_chinensis	RchiOBHm_Chr7g0185271
rosa_laevigata	RLG00000030277
rosa_multiflora	Rmu_sc0000605.1_g000028
rosa_roxburghii	Rroxscaffold_1G00051070 Rroxscaffold_3G00258470
rosa_rugosa	Rorug04G0137600
rosa_samantha	Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600
rosa_wichuraiana	Rw3G028160 Rw5G040880 Rw7G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	175, 334
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	66
AjnI	CCWGG	3 cut(s)	13, 327, 332
AluBI	AGCT	3 cut(s)	148, 245, 458
AluI	AGCT	3 cut(s)	148, 245, 458
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	48, 330
ApoI	RAATTY	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	297
BciT130I	CCWGG	3 cut(s)	15, 329, 334
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	278
Bme1390I	CCNGG	3 cut(s)	15, 329, 334
BmeT110I	CYCGRG	1 cut(s)	86
BmrFI	CCNGG	3 cut(s)	15, 329, 334
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BsaJI	CCNNGG	3 cut(s)	13, 298, 333
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 334
Bse1I	ACTGG	2 cut(s)	257, 379
BseBI	CCWGG	3 cut(s)	15, 329, 334
BseDI	CCNNGG	3 cut(s)	13, 298, 333
BseLI	CCNNNNNNNGG	2 cut(s)	175, 334
BseNI	ACTGG	2 cut(s)	257, 379
BshFI	GGCC	2 cut(s)	50, 332
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	175, 334
BsnI	GGCC	2 cut(s)	50, 332
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	2 cut(s)	50, 332
BspPI	GGATC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	257, 379
BssECI	CCNNGG	3 cut(s)	13, 298, 333
BssMI	GATC	1 cut(s)	415
Bst2UI	CCWGG	3 cut(s)	15, 329, 334
Bst6I	CTCTTC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	3 cut(s)	15, 329, 334
BstSCI	CCNGG	3 cut(s)	13, 327, 332
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	50, 332
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	52
CviAII	CATG	2 cut(s)	101, 106
CviJI	RGCY	9 cut(s)	50, 110, 148, 190, 233, 245, 332, 363, 458
CviKI_1	RGCY	9 cut(s)	50, 110, 148, 190, 233, 245, 332, 363, 458
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	13, 327, 332
EcoT22I	ATGCAT	1 cut(s)	102
FaeI	CATG	2 cut(s)	104, 109
FaiI	YATR	8 cut(s)	102, 107, 236, 242, 357, 390, 466, 468
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	100, 105
FblI	GTMKAC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	50, 332
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	104, 109
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	164, 259, 303, 347
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	40, 178, 299
Hpy188III	TCNNGA	2 cut(s)	88, 227
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	29, 100, 250, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	104, 109
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	300
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	5 cut(s)	83, 103, 106, 165, 215
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	60, 125, 208
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	5 cut(s)	190, 223, 293, 439, 464
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	3 cut(s)	152, 279, 317
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	15, 329, 334
MvaI	CCWGG	3 cut(s)	15, 329, 334
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	104, 109
NsiI	ATGCAT	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	86
PfeI	GAWTC	3 cut(s)	164, 259, 303
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	3 cut(s)	13, 327, 332
PspGI	CCWGG	3 cut(s)	13, 327, 332
PvuII	CAGCTG	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	152, 279, 317
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	15, 329, 334
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	4 cut(s)	150, 247, 397, 460
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	86, 278
SmoI	CTYRAG	2 cut(s)	86, 278
Sse9I	AATT	3 cut(s)	60, 125, 208
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	13, 327, 332
TaqI	TCGA	2 cut(s)	87, 345
TasI	AATT	3 cut(s)	60, 125, 208
TfiI	GAWTC	3 cut(s)	164, 259, 303
Tru1I	TTAA	3 cut(s)	152, 279, 317
Tru9I	TTAA	3 cut(s)	152, 279, 317
TscAI	CASTG	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.