Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005905

Physical Location & Seq

Genomic Coordinates Forward (+)

1381525 .. 1383126

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTGTTACCCCCTGGTTCTTTTATTGCAGAAGTGTCAGACAAAGTGGCCAGCAAGGGATTTTCAGTAGAAGACAAGGAGATACTCGAGAAGCAGATGCATGGCATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTCAATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATACCTCTGCACTGGGAGAATCAGGTGAAAGACTATCTTAAGCAAAATGAAGCGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATCATAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.63

Weight (kDa)

5.04

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06640 FvH4_3g06680
pyrus_communis	pycom03g06710
rosa_chinensis	RchiOBHm_Chr7g0185271
rosa_laevigata	RLG00000030277
rosa_multiflora	Rmu_sc0000605.1_g000028
rosa_roxburghii	Rroxscaffold_1G00051070 Rroxscaffold_3G00258470
rosa_rugosa	Rorug04G0137600
rosa_samantha	Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600
rosa_wichuraiana	Rw3G028160 Rw5G040880 Rw7G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	139, 241
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	209, 417
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	175, 334, 412
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	153
AjnI	CCWGG	2 cut(s)	13, 327
AluBI	AGCT	3 cut(s)	148, 383, 458
AluI	AGCT	3 cut(s)	148, 383, 458
AlwI	GGATC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	2 cut(s)	48, 330
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	1 cut(s)	360
BciT130I	CCWGG	2 cut(s)	15, 329
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	296
BfrI	CTTAAG	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	15, 329
BmeT110I	CYCGRG	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	15, 329
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	78
BplI	GAGNNNNNCTC	4 cut(s)	188, 220, 229, 261
BsaJI	CCNNGG	3 cut(s)	13, 298, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 334, 412
Bse1I	ACTGG	2 cut(s)	257, 379
BseBI	CCWGG	2 cut(s)	15, 329
BseDI	CCNNGG	3 cut(s)	13, 298, 333
BseLI	CCNNNNNNNGG	3 cut(s)	175, 334, 412
BseNI	ACTGG	2 cut(s)	257, 379
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	50, 332
BsiHKCI	CYCGRG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	175, 334, 412
BsnI	GGCC	2 cut(s)	50, 332
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	415
BspANI	GGCC	2 cut(s)	50, 332
BspPI	GGATC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	257, 379
BssECI	CCNNGG	3 cut(s)	13, 298, 333
BssMI	GATC	1 cut(s)	415
BssNAI	GTATAC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	15, 329
Bst6I	CTCTTC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	2 cut(s)	15, 329
BstSCI	CCNGG	2 cut(s)	13, 327
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstZ17I	GTATAC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	50, 332
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	295
CviAII	CATG	2 cut(s)	101, 106
CviJI	RGCY	9 cut(s)	50, 110, 148, 190, 233, 332, 363, 383, 458
CviKI_1	RGCY	9 cut(s)	50, 110, 148, 190, 233, 332, 363, 383, 458
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	333
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	209, 417
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	13, 327
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	104, 109
FaiI	YATR	8 cut(s)	102, 107, 236, 242, 357, 390, 466, 468
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	100, 105
FblI	GTMKAC	2 cut(s)	139, 241
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	50, 332
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	104, 109
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	164, 259, 303, 347
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	140, 242
Hpy188I	TCNGA	3 cut(s)	40, 178, 299
Hpy188III	TCNNGA	2 cut(s)	88, 227
Hpy8I	GTNNAC	2 cut(s)	140, 242
HpyCH4V	TGCA	4 cut(s)	29, 100, 250, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	104, 109
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	9 cut(s)	27, 64, 212, 238, 248, 314, 341, 360, 408
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	3 cut(s)	83, 165, 215
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	125, 208
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	6 cut(s)	190, 223, 255, 293, 439, 464
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	279, 317
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	15, 329
MvaI	CCWGG	2 cut(s)	15, 329
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	104, 109
NsiI	ATGCAT	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	86
PfeI	GAWTC	3 cut(s)	164, 259, 303
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	13, 327
PspGI	CCWGG	2 cut(s)	13, 327
PvuII	CAGCTG	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	279, 317
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	15, 329
SetI	ASST	6 cut(s)	150, 247, 267, 385, 397, 460
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	86, 278
SmoI	CTYRAG	2 cut(s)	86, 278
Sse9I	AATT	2 cut(s)	125, 208
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	13, 327
StyI	CCWWGG	1 cut(s)	333
TaqI	TCGA	2 cut(s)	87, 345
TasI	AATT	2 cut(s)	125, 208
TfiI	GAWTC	3 cut(s)	164, 259, 303
Tru1I	TTAA	2 cut(s)	279, 317
Tru9I	TTAA	2 cut(s)	279, 317
TscAI	CASTG	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	2 cut(s)	139, 241
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.