Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005905

Physical Location & Seq

Genomic Coordinates Reverse (-)

5610409 .. 5614044

Gene Structure 3636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG072600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTCACAAAGGAAGACAAGGAGATACTCGAGAAGAAGATGCATGGCATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCCCAATCTTTGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATAGCTTTGCACTCAGAGAATCTGGTGAAAGACTATCTTAAGCAAAATGAAGTGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAGGGGGTTGCTCGACTCTCATCATAATGGCTCTAACAAGACTGGTTTAGCGGAATATACACCTAAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.68

Weight (kDa)

5.61

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06640 FvH4_3g06680
pyrus_communis	pycom03g06710
rosa_chinensis	RchiOBHm_Chr7g0185271
rosa_laevigata	RLG00000030277
rosa_multiflora	Rmu_sc0000605.1_g000028
rosa_roxburghii	Rroxscaffold_1G00051070 Rroxscaffold_3G00258470
rosa_rugosa	Rorug04G0137600
rosa_samantha	Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600
rosa_wichuraiana	Rw3G028160 Rw5G040880 Rw7G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	82
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	118, 277
AflII	CTTAAG	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	270, 275
AluBI	AGCT	3 cut(s)	91, 188, 401
AluI	AGCT	3 cut(s)	91, 188, 401
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	240
BciT130I	CCWGG	2 cut(s)	272, 277
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	272, 277
BmeT110I	CYCGRG	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	272, 277
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BsaJI	CCNNGG	2 cut(s)	241, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 277
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	272, 277
BseDI	CCNNGG	2 cut(s)	241, 276
BseLI	CCNNNNNNNGG	2 cut(s)	118, 277
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	118, 277
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	209
BspPI	GGATC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	241, 276
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	2 cut(s)	272, 277
Bst6I	CTCTTC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	196, 250
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	272, 277
BstSCI	CCNGG	2 cut(s)	270, 275
BstSFI	CTRYAG	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	275
CviAII	CATG	2 cut(s)	44, 49
CviJI	RGCY	8 cut(s)	53, 91, 133, 176, 188, 275, 306, 401
CviKI_1	RGCY	8 cut(s)	53, 91, 133, 176, 188, 275, 306, 401
DdeI	CTNAG	2 cut(s)	196, 250
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	270, 275
EcoT22I	ATGCAT	1 cut(s)	45
FaeI	CATG	2 cut(s)	47, 52
FaiI	YATR	8 cut(s)	45, 50, 179, 185, 300, 333, 409, 411
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	2 cut(s)	43, 48
FblI	GTMKAC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	47, 52
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	4 cut(s)	107, 202, 246, 290
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	199, 242
Hpy188III	TCNNGA	2 cut(s)	31, 170
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	43, 193, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	196, 250
Hsp92II	CATG	2 cut(s)	47, 52
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	7 cut(s)	155, 191, 257, 262, 284, 289, 303
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	4 cut(s)	26, 46, 49, 158
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	2 cut(s)	68, 151
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	133, 166, 236, 382, 407
Mph1103I	ATGCAT	1 cut(s)	45
MseI	TTAA	3 cut(s)	95, 222, 260
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	272, 277
MvaI	CCWGG	2 cut(s)	272, 277
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	47, 52
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	45
PaeR7I	CTCGAG	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	107, 202, 246
PflMI	CCANNNNNTGG	1 cut(s)	118
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	270, 275
PspGI	CCWGG	2 cut(s)	270, 275
PvuII	CAGCTG	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	95, 222, 260
Sau3AI	GATC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	272, 277
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	4 cut(s)	93, 190, 340, 403
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	29, 221
SmoI	CTYRAG	2 cut(s)	29, 221
Sse9I	AATT	2 cut(s)	68, 151
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	270, 275
TaqI	TCGA	2 cut(s)	30, 288
TasI	AATT	2 cut(s)	68, 151
TfiI	GAWTC	3 cut(s)	107, 202, 246
Tru1I	TTAA	3 cut(s)	95, 222, 260
Tru9I	TTAA	3 cut(s)	95, 222, 260
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.