Rh5CG324900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005905
Physical Location & Seq
Reverse (-)
35968694 .. 35971539
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG324900.1

Sequence Viewer

Length: 429 bp
ATGGGCTTTGGTGGAGGTGATAGTCAAGCGAGTTTAGGTCCCACACCTCGCGATCGTTTGCCAAATGATGCTATGGCCTATAATGGGCTTCCCATCAGCCATCCCATAGCGGCTCTTCGGCAGGTGCCCTGTGATTTTAGCAGTTGGGGACCAAGGAGGAAAATGGGCTTCTGGCCTACCATCGCTCCAGAGGAAAATGTTTGGTATCAGGAGGTGAAAGACTATCTTAAGCAAAATGAAGCGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAGGGGGTTGCTCGACTCCCATCATAATGGCTCTGACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATTAGCTGTTGTATATGGAGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.68

Weight (kDa)

5.59

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 124
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 366
AfeI AGCGCT 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 84, 283
AflII CTTAAG 1 cut(s) 227
AjnI CCWGG 2 cut(s) 276, 281
AluBI AGCT 2 cut(s) 332, 407
AluI AGCT 2 cut(s) 332, 407
AlwI GGATC 1 cut(s) 372
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 3 cut(s) 75, 173, 279
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 38, 149
AsuHPI GGTGA 2 cut(s) 29, 226
AvaII GGWCC 2 cut(s) 38, 149
BaeGI GKGCMC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 124
BccI CCATC 4 cut(s) 101, 108, 188, 309
BciT130I CCWGG 2 cut(s) 278, 283
BfoI RGCGCY 1 cut(s) 245
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 278, 283
Bme18I GGWCC 2 cut(s) 38, 149
BmgT120I GGNCC 2 cut(s) 38, 149
BmiI GGNNCC 3 cut(s) 40, 126, 150
BmrFI CCNGG 2 cut(s) 278, 283
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 152, 247, 282
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 283
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 278, 283
BseDI CCNNGG 3 cut(s) 152, 247, 282
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 84, 283
BseNI ACTGG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 77, 175, 281
BshNI GGYRCC 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 55
BslFI GGGAC 2 cut(s) 24, 162
BslI CCNNNNNNNGG 2 cut(s) 84, 283
BsmFI GGGAC 2 cut(s) 24, 162
BsnI GGCC 3 cut(s) 77, 175, 281
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 52, 364
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 1 cut(s) 110
BspANI GGCC 3 cut(s) 77, 175, 281
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 40, 126, 150
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 124
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 152, 247, 282
BssMI GATC 2 cut(s) 52, 364
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 278, 283
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 55, 367
BstMBI GATC 2 cut(s) 52, 364
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 278, 283
BstSCI CCNGG 2 cut(s) 276, 281
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 308
BsuRI GGCC 3 cut(s) 77, 175, 281
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 100
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 38, 149
DdeI CTNAG 1 cut(s) 256
DpnI GATC 2 cut(s) 54, 366
DpnII GATC 2 cut(s) 52, 364
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 38, 149
Eco47III AGCGCT 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 276, 281
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaiI YATR 7 cut(s) 74, 81, 107, 306, 339, 415, 417
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 2 cut(s) 24, 162
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 3 cut(s) 77, 175, 281
HhaI GCGC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 2 cut(s) 252, 296
HphI GGTGA 2 cut(s) 29, 226
Hpy188I TCNGA 2 cut(s) 248, 316
Hpy188III TCNNGA 3 cut(s) 50, 188, 209
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 256
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 2 cut(s) 52, 364
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 190, 249
LweI GCATC 1 cut(s) 58
MalI GATC 2 cut(s) 54, 366
MboI GATC 2 cut(s) 52, 364
MboII GAAGA 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 7 cut(s) 8, 57, 150, 184, 205, 242, 388
MseI TTAA 2 cut(s) 228, 266
MslI CAYNNNNRTG 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 278, 283
MvaI CCWGG 2 cut(s) 278, 283
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 2 cut(s) 52, 364
NlaIV GGNNCC 3 cut(s) 40, 126, 150
NruI TCGCGA 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 276, 281
PspGI CCWGG 2 cut(s) 276, 281
PspN4I GGNNCC 3 cut(s) 40, 126, 150
PspPI GGNCC 2 cut(s) 38, 149
PspPPI RGGWCCY 1 cut(s) 38
PvuI CGATCG 1 cut(s) 55
RruI TCGCGA 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 228, 266
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 52, 364
Sau96I GGNCC 2 cut(s) 38, 149
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 278, 283
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 19, 40, 49, 126, 216, 334, 346, 409
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 2 cut(s) 38, 149
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 276, 281
StyI CCWWGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 294
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 228, 266
Tru9I TTAA 2 cut(s) 228, 266
TspDTI ATGAA 1 cut(s) 252
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 38, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.