Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Reverse (-)

60668676 .. 60670256

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGATGGGATGGGTGCATCTGGAAACCACGATCTAGGAGGTCACAGCATCATTAATGACTTTGAGTTACAAGACTTCATAGATGATGCAAACTTCGACCAGTTCATCAATCTTATTCGCGGCGAAAATGAGGATCCAGCAGCAGCTCATTTTGATTGCGACCTTATCAGTGGCTCGTGCTTTGTTGATAACCAGTTTAGTCCAACTACTCCGGGTAGTGGTTTCTTTGGTTTAGATCATAATACTACTGTCGTATCCGATCCAGCTCCTTTTCTTACTACATTACCAAATTTTGATGGAGAAATGAACGATATTGGGGAAGAAGATAATGATGCAGACTCATGTGGAACAACGACAACAACCACCACAAATACCACAGCCACGACGACAAAGAAGCCAAAGGTTGATCGGTCGAGAACCTTGGTTTCGGAGAGGAAGAGGAGGGGAAGGATGAAAGAAAAACTCTATGCATTGCGGTCCTTGGTTCCTAACATCACTAAGATGGACAAAGCCTCCATCGTTGGAGATGCTGTATCATATGTACAAGATCTTCAAAAACACGCTAAGAAGCTGGAAGCTGAGATTTCAGGTCTTGAAGCATCCATAGAAGGATCAGGGGTAAAGCAAGCAGTATCAACCCAAAATCCAACCAAGAATAAATTAGTTGCAGACAAGTACCATTTAACTCCCACGGAAATCATTCAGGTTCGGTTAATTACACCCCTTGGTGCACGTATAAGAGTAACAATAATTAAATTTAATATAATCTTTAGAGCAACTTCTTTTGGAATCTCAAGTTTTGCACCGACATTGTTCTCAAACATAGATGTATCCCAAGTAGAGGAGAAAAGCTTTTATGTGAAAGTGGGATGCAACAAAGGAGTAGGCGTGGCCACAGCGCTTTACAAGGCTATCGAATCCCTTACAAGCTTCAATGTTCTGAGTTCAAACTTGAACACGGTTAATTCTGGGAGATTCGAAATAACACTCTGTTTGAATGTGAAAGAAAGCGAGCAGGAGATCATCAACTTACCAAACCTGAAACTTTGGGTGACTGGAGCTTTCCTGAACCAAGGTTTTGAGTTAGCTACACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

366

Amino Acids

40.01

Weight (kDa)

5.28

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	141 - 185	4.5e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	120, 475
AclWI	GGATC	4 cut(s)	128, 141, 254, 619
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	2 cut(s)	289, 755
AfaI	GTAC	2 cut(s)	543, 677
AfeI	AGCGCT	1 cut(s)	900
AfiI	CCNNNNNNNGG	2 cut(s)	218, 841
AgsI	TTSAA	6 cut(s)	554, 596, 934, 948, 955, 997
AluBI	AGCT	8 cut(s)	146, 266, 571, 578, 852, 930, 1061, 1088
AluI	AGCT	8 cut(s)	146, 266, 571, 578, 852, 930, 1061, 1088
Alw21I	GWGCWC	1 cut(s)	733
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	4 cut(s)	128, 141, 254, 619
Aor51HI	AGCGCT	1 cut(s)	900
AoxI	GGCC	1 cut(s)	891
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	2 cut(s)	140, 143
ApoI	RAATTY	2 cut(s)	289, 755
AseI	ATTAAT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	1063
AsuII	TTCGAA	1 cut(s)	978
AvaII	GGWCC	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	733
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	893
BamHI	GGATCC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BauI	CACGAG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	152, 155
BccI	CCATC	4 cut(s)	4, 290, 496, 524
BciVI	GTATCC	2 cut(s)	265, 841
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	902
BfuI	GTATCC	2 cut(s)	265, 841
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	3 cut(s)	121, 141, 144
BlsI	GCNGC	3 cut(s)	122, 142, 145
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	135, 486
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	7 cut(s)	26, 57, 76, 322, 517, 608, 860
BpmI	CTGGAG	1 cut(s)	1077
Bpu14I	TTCGAA	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	734
BsaJI	CCNNGG	5 cut(s)	420, 480, 690, 724, 1072
BsaXI	ACNNNNNCTCC	6 cut(s)	497, 516, 527, 546, 873, 903
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 841
Bse1I	ACTGG	3 cut(s)	100, 193, 1060
Bse3DI	GCAATG	1 cut(s)	470
BseDI	CCNNGG	5 cut(s)	420, 480, 690, 724, 1072
BseGI	GGATG	5 cut(s)	10, 15, 456, 599, 875
BseLI	CCNNNNNNNGG	2 cut(s)	218, 841
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	570, 932
BseNI	ACTGG	3 cut(s)	100, 193, 1060
BseRI	GAGGAG	2 cut(s)	454, 857
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	152, 155
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	893
BsiEI	CGRYCG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	218, 841
BsnI	GGCC	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	978
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
BspACI	CCGC	2 cut(s)	120, 475
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	2 cut(s)	571, 933
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	135, 486
BspPI	GGATC	4 cut(s)	128, 141, 254, 619
BspT104I	TTCGAA	1 cut(s)	978
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	3 cut(s)	100, 193, 1060
BssECI	CCNNGG	5 cut(s)	420, 480, 690, 724, 1072
BssMI	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
BssSI	CACGAG	1 cut(s)	175
BssT1I	CCWWGG	4 cut(s)	420, 480, 724, 1072
Bst2BI	CACGAG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	250, 961
Bst6I	CTCTTC	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	978
BstC8I	GCNNGC	2 cut(s)	627, 1013
BstDEI	CTNAG	4 cut(s)	498, 564, 579, 941
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	5 cut(s)	10, 15, 456, 599, 875
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	902
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	8 cut(s)	34, 136, 238, 262, 409, 550, 614, 1023
BstMBI	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
BstMCI	CGRYCG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	733
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	152, 155
BstX2I	RGATCY	2 cut(s)	133, 547
BstYI	RGATCY	2 cut(s)	133, 547
BsuI	GTATCC	2 cut(s)	265, 841
BsuRI	GGCC	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	10, 15, 456, 599, 875
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	627, 1013
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	542, 676
CviAII	CATG	1 cut(s)	342
CviQI	GTAC	2 cut(s)	542, 676
DdeI	CTNAG	4 cut(s)	498, 564, 579, 941
DpnI	GATC	8 cut(s)	33, 135, 237, 261, 408, 549, 613, 1022
DpnII	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	4 cut(s)	420, 480, 724, 1072
Eco47I	GGWCC	1 cut(s)	477
Eco47III	AGCGCT	1 cut(s)	900
EcoT14I	CCWWGG	4 cut(s)	420, 480, 724, 1072
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	4 cut(s)	420, 480, 724, 1072
FaeI	CATG	1 cut(s)	345
FatI	CATG	1 cut(s)	341
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	121, 141, 144
FokI	GGATG	5 cut(s)	17, 22, 463, 586, 882
Fsp4HI	GCNGC	3 cut(s)	121, 141, 144
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	3 cut(s)	121, 141, 144
GsuI	CTGGAG	1 cut(s)	1077
HaeII	RGCGCY	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HindIII	AAGCTT	2 cut(s)	850, 928
HinfI	GANTC	4 cut(s)	338, 789, 917, 975
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	1063
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	3 cut(s)	259, 430, 942
Hpy188III	TCNNGA	4 cut(s)	21, 414, 593, 1066
Hpy8I	GTNNAC	1 cut(s)	731
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	441, 602
HpyCH4III	ACNGT	2 cut(s)	250, 961
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	8 cut(s)	17, 89, 335, 470, 668, 731, 803, 873
HpyF3I	CTNAG	4 cut(s)	498, 564, 579, 941
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	1 cut(s)	345
HspAI	GCGC	1 cut(s)	899
Kzo9I	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
LmnI	GCTCC	2 cut(s)	271, 1058
Lsp1109I	GCAGC	2 cut(s)	152, 155
LweI	GCATC	7 cut(s)	26, 57, 76, 322, 517, 608, 860
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	4 cut(s)	41, 66, 742, 1051
MalI	GATC	8 cut(s)	33, 135, 237, 261, 408, 549, 613, 1022
MboI	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
MboII	GAAGA	4 cut(s)	332, 335, 448, 542
MflI	RGATCY	2 cut(s)	133, 547
MhlI	GDGCHC	1 cut(s)	733
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	6 cut(s)	289, 659, 714, 750, 755, 964
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	3 cut(s)	227, 502, 671
MnlI	CCTC	7 cut(s)	32, 124, 426, 432, 435, 523, 835
Mox20I	TGGCCA	1 cut(s)	893
Mph1103I	ATGCAT	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	6 cut(s)	54, 683, 713, 753, 759, 963
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	893
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	2 cut(s)	135, 486
NmuCI	GTSAC	2 cut(s)	41, 1051
NsiI	ATGCAT	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	978
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	789, 917, 975
PkrI	GCNGC	3 cut(s)	122, 142, 145
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	734
PshBI	ATTAAT	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	135, 486
PspPI	GGNCC	1 cut(s)	477
PsuI	RGATCY	2 cut(s)	133, 547
RsaI	GTAC	2 cut(s)	543, 677
RsaNI	GTAC	2 cut(s)	542, 676
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	6 cut(s)	54, 683, 713, 753, 759, 963
SatI	GCNGC	3 cut(s)	121, 141, 144
Sau3AI	GATC	8 cut(s)	31, 133, 235, 259, 406, 547, 611, 1020
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	7 cut(s)	26, 57, 76, 322, 517, 608, 860
SfuI	TTCGAA	1 cut(s)	978
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
Sse9I	AATT	6 cut(s)	289, 659, 714, 750, 755, 964
SsiI	CCGC	2 cut(s)	120, 475
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	4 cut(s)	420, 480, 724, 1072
TaaI	ACNGT	2 cut(s)	250, 961
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	4 cut(s)	96, 413, 915, 978
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	6 cut(s)	289, 659, 714, 750, 755, 964
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	3 cut(s)	789, 917, 975
Tru1I	TTAA	6 cut(s)	54, 683, 713, 753, 759, 963
Tru9I	TTAA	6 cut(s)	54, 683, 713, 753, 759, 963
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	41, 1051
TseI	GCWGC	2 cut(s)	140, 143
Tsp45I	GTSAC	2 cut(s)	41, 1051
TspDTI	ATGAA	4 cut(s)	67, 94, 320, 467
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	477
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	289, 755
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.