Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

995427 .. 1003714

Gene Structure 8288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGCAAAGAAGTGCGTGTATTATTCTTCTGCTGCTGTTCCTGTGTACATTATTTGGGATTATCTCACTGTGTCATTGCTATTCAGATAGTTGGAACAGCATGCTGTTAGGATCTTCAAGTGTTTCAAATCCAGTTGTGGCTCCAAAGATGAGGTCAATAAGAATGAAGAGGTTGTTACAGGATCGTCATGATGAAAATCATAATACTGAGAGAGAAGGACAAGAAATATGTAATAACCAGAATTTAGCTGGTAGTATATCTGAAACTGGAACTGCAATATCTGAAGCTAGAACTACAAATTCTGCTGGGAATGAACAGCATCAAATTCATCCAACACCAAGGAGTCCAATGGGCTTCTTCGACCTGAGCGTACCCTACACCGACCTCCCGCCGCCGGACCGCTCAACCCGCACAAAGCTCGTGACCAAGGCCCTCGAGCTCGGCTACTCTGGCGTCGCCTACAACCGTACGATCAAGGGTGTCATGTCCGATCGCGACCGTTGCTCCATCCCCCTCCTCACTCTTCCTTCTCTCCTCAAACACTCTCCTCACCTCACCTCCTCCGTCGGCTTCCACCGCCACCTCCTCGGCGTCCCACGCGCCACCCCTTTCCGCCAGTACACGCGCCTCACCGTCTGCGCCGAAACCCTTGCCCAGGCTCAGGCCCTCAATTCTGGCAACCCCATTTTGAAGACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAGTTCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATAGCGATTGATTTTTCGGAGAAGTTATCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCCATTGAGCGGAAGGTGTATTTTGAGATCACATATGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAACTGCGAATGAATTTAGAGGGCCATATGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGGACTCTTATATCTAATGCAGTGAGAAAAAAACACTATTATAAGGAAGCCATTAGAGTTGAAGTACTACCATCAGGTGAAGAAAGTGATGGGAACAAACCTTCGTCTAGTGACTCTTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTCGGTTATTGACAGTATGCCATCACTTGGATTTCAAGTTAACGATCTTATAGCTGGAACTAATGTGGTTGTGTCGCAACCATTGGCTACTCAGAAAAACATCGTTTCTGCTCCCCAGTTAAATGTGCAATCAGTTGCAACTGATGGAGTACAAGAACAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCGAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACGATGTTATTCCAATTGAAGATCCTTCGATAACCACAAGAGCAGAACCAAATAGTCCAGATGAAACAGATGGGATTGCTACAGATATTCATGGTGTGCAATCACAGAAGTCTGCGATTGCAAATGCTGTTAATGATGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAACGAATTCAGCTGAATCAATGGGGATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTGTGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACCACTGGAGCGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACTACAGAAATTCTTAATGTTAGTACGACTAATTGCGAATTGAATGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCCTGATTCTGAAGTTCAGGTTCCCACTAATTATCAGGACACTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACAGGTAAAGAAAAAAAATCTTTGCCTCTGGATTCAGCATTGGATAAAAGTATTTTGGAAGTGGATGAATTGACGGAACCTGGAGATGATGTAGTTGTACTTGCAAATCAGGTTCCTGTTCTGGATTCTAGTGATGAGATGACAGCAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGCATGAGCAAGAACATGGGAAAGCTGATGTTGAATTGAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTGACATTTCTTCCGCTCAAGCGATTGCTGCATGCTACACCTTTTAAGAAGGCTCGGAAAAGTAAAAGGAGACATAAGATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

837

Amino Acids

91.66

Weight (kDa)

5.55

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	121 - 357	6.4e-50	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	908, 1116
AccB7I	CCANNNNNTGG	1 cut(s)	1334
AccBSI	CCGCTC	5 cut(s)	402, 841, 1495, 1862, 2443
AccII	CGCG	3 cut(s)	495, 600, 625
AccIII	TCCGGA	1 cut(s)	1876
AclWI	GGATC	5 cut(s)	118, 189, 1196, 1209, 1577
AcsI	RAATTY	7 cut(s)	241, 298, 324, 986, 1744, 1776, 1905
AcuI	CTGAAG	3 cut(s)	303, 1817, 2037
AcyI	GRCGYC	2 cut(s)	453, 591
AfaI	GTAC	9 cut(s)	46, 372, 469, 620, 1140, 1270, 1458, 1921, 2229
AfiI	CCNNNNNNNGG	5 cut(s)	394, 655, 661, 840, 1334
AjnI	CCWGG	2 cut(s)	654, 2209
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	3 cut(s)	1037, 2300, 2491
AlwI	GGATC	5 cut(s)	118, 189, 1196, 1209, 1577
AlwNI	CAGNNNCTG	2 cut(s)	820, 2279
Ama87I	CYCGRG	2 cut(s)	434, 939
Aor13HI	TCCGGA	1 cut(s)	1876
AoxI	GGCC	4 cut(s)	429, 663, 744, 995
ApeKI	GCWGC	5 cut(s)	31, 814, 830, 968, 2455
ApoI	RAATTY	7 cut(s)	241, 298, 324, 986, 1744, 1776, 1905
ArsI	GACNNNNNNTTYG	6 cut(s)	137, 169, 685, 717, 1004, 1036
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	3 cut(s)	602, 627, 641
AspS9I	GGNCC	5 cut(s)	397, 430, 664, 995, 2060
AsuC2I	CCSGG	1 cut(s)	2058
AsuHPI	GGTGA	7 cut(s)	542, 547, 622, 1163, 1229, 1235, 2440
AvaI	CYCGRG	2 cut(s)	434, 939
AvaII	GGWCC	2 cut(s)	397, 2060
BamHI	GGATCC	1 cut(s)	1201
BanII	GRGCYC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	5 cut(s)	18, 817, 826, 955, 2442
BcgI	CGANNNNNNTGC	4 cut(s)	400, 434, 632, 666
BciT130I	CCWGG	2 cut(s)	656, 2211
BcnI	CCSGG	1 cut(s)	2058
BcoDI	GTCTC	3 cut(s)	1037, 2300, 2491
BfaI	CTAG	8 cut(s)	288, 894, 963, 1182, 1212, 1539, 1979, 2259
BfmI	CTRYAG	2 cut(s)	1641, 1899
BisI	GCNGC	8 cut(s)	32, 392, 815, 831, 969, 1056, 1496, 2456
BlsI	GCNGC	8 cut(s)	33, 393, 816, 832, 970, 1057, 1497, 2457
BmcAI	AGTACT	2 cut(s)	1140, 1270
Bme1390I	CCNGG	3 cut(s)	656, 2058, 2211
Bme18I	GGWCC	2 cut(s)	397, 2060
BmeT110I	CYCGRG	2 cut(s)	434, 939
BmgT120I	GGNCC	5 cut(s)	397, 430, 664, 995, 2060
BmiI	GGNNCC	5 cut(s)	141, 1203, 2028, 2208, 2244
BmrFI	CCNGG	3 cut(s)	656, 2058, 2211
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	2 cut(s)	328, 1816
BmuI	ACTGGG	1 cut(s)	1417
BpiI	GAAGAC	1 cut(s)	698
BpmI	CTGGAG	4 cut(s)	1249, 1749, 1878, 2232
Bpu10I	CCTNAGC	3 cut(s)	365, 660, 1050
BpuEI	CTTGAG	1 cut(s)	2429
BpuMI	CCSGG	1 cut(s)	2058
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	453, 591
BsaI	GGTCTC	1 cut(s)	1037
BsaJI	CCNNGG	7 cut(s)	338, 426, 586, 654, 1038, 2373, 2400
BsaWI	WCCGGW	1 cut(s)	1876
BsaXI	ACNNNNNCTCC	6 cut(s)	488, 518, 542, 572, 2205, 2235
Bsc4I	CCNNNNNNNGG	5 cut(s)	394, 655, 661, 840, 1334
Bse1I	ACTGG	8 cut(s)	131, 271, 616, 727, 1266, 1423, 1732, 1861
Bse3DI	GCAATG	2 cut(s)	73, 1022
Bse8I	GATNNNNATC	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	1876
BseBI	CCWGG	2 cut(s)	656, 2211
BseDI	CCNNGG	7 cut(s)	338, 426, 586, 654, 1038, 2373, 2400
BseGI	GGATG	5 cut(s)	328, 507, 1885, 2125, 2200
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	5 cut(s)	394, 655, 661, 840, 1334
BseMI	GCAATG	2 cut(s)	73, 1022
BseMII	CTCAG	6 cut(s)	198, 356, 674, 1412, 1535, 1967
BseNI	ACTGG	8 cut(s)	131, 271, 616, 727, 1266, 1423, 1732, 1861
BseRI	GAGGAG	5 cut(s)	506, 524, 537, 550, 575
BseXI	GCAGC	5 cut(s)	18, 817, 826, 955, 2442
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	3 cut(s)	495, 600, 625
Bsh1285I	CGRYCG	2 cut(s)	493, 499
BshFI	GGCC	4 cut(s)	431, 665, 746, 997
BsiEI	CGRYCG	2 cut(s)	493, 499
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	2 cut(s)	434, 939
BsiSI	CCGG	3 cut(s)	395, 1877, 2058
BsiWI	CGTACG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	5 cut(s)	394, 655, 661, 840, 1334
BsmAI	GTCTC	3 cut(s)	1037, 2300, 2491
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	4 cut(s)	431, 665, 746, 997
Bso31I	GGTCTC	1 cut(s)	1037
BsoBI	CYCGRG	2 cut(s)	434, 939
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	1876
Bsp1407I	TGTACA	1 cut(s)	44
Bsp143I	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
Bsp19I	CCATGG	1 cut(s)	1038
Bsp68I	TCGCGA	1 cut(s)	495
BspANI	GGCC	4 cut(s)	431, 665, 746, 997
BspCNI	CTCAG	6 cut(s)	199, 357, 673, 1411, 1534, 1966
BspEI	TCCGGA	1 cut(s)	1876
BspFNI	CGCG	3 cut(s)	495, 600, 625
BspHI	TCATGA	3 cut(s)	187, 1780, 2302
BspLI	GGNNCC	5 cut(s)	141, 1203, 2028, 2208, 2244
BspPI	GGATC	5 cut(s)	118, 189, 1196, 1209, 1577
BspTNI	GGTCTC	1 cut(s)	1037
BsrBI	CCGCTC	5 cut(s)	402, 841, 1495, 1862, 2443
BsrDI	GCAATG	2 cut(s)	73, 1022
BsrGI	TGTACA	1 cut(s)	44
BsrI	ACTGG	8 cut(s)	131, 271, 616, 727, 1266, 1423, 1732, 1861
BssECI	CCNNGG	7 cut(s)	338, 426, 586, 654, 1038, 2373, 2400
BssMI	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
BssNI	GRCGYC	2 cut(s)	453, 591
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	5 cut(s)	338, 426, 1038, 2373, 2400
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	656, 2211
Bst4CI	ACNGT	5 cut(s)	69, 467, 500, 634, 1322
Bst6I	CTCTTC	3 cut(s)	161, 528, 2067
BstACI	GRCGYC	2 cut(s)	453, 591
BstAUI	TGTACA	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	101, 2460
BstDEI	CTNAG	8 cut(s)	207, 365, 660, 918, 1050, 1398, 1521, 1953
BstDSI	CCRYGG	1 cut(s)	1038
BstENI	CCTNNNNNAGG	1 cut(s)	653
BstF5I	GGATG	5 cut(s)	328, 507, 1885, 2125, 2200
BstFNI	CGCG	3 cut(s)	495, 600, 625
BstHHI	GCGC	3 cut(s)	602, 627, 641
BstKTI	GATC	9 cut(s)	113, 184, 474, 493, 742, 861, 1204, 1354, 1585
BstMAI	GTCTC	3 cut(s)	1037, 2300, 2491
BstMBI	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
BstMCI	CGRYCG	2 cut(s)	493, 499
BstMWI	GCNNNNNNNGC	8 cut(s)	408, 450, 501, 576, 597, 977, 1055, 2455
BstNI	CCWGG	2 cut(s)	656, 2211
BstNSI	RCATGY	2 cut(s)	103, 2462
BstSCI	CCNGG	3 cut(s)	654, 2056, 2209
BstSFI	CTRYAG	2 cut(s)	1641, 1899
BstUI	CGCG	3 cut(s)	495, 600, 625
BstV1I	GCAGC	5 cut(s)	18, 817, 826, 955, 2442
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	3 cut(s)	110, 1201, 1582
BstYI	RGATCY	3 cut(s)	110, 1201, 1582
BsuRI	GGCC	4 cut(s)	431, 665, 746, 997
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	5 cut(s)	328, 507, 1885, 2125, 2200
BtsI	GCAGTG	1 cut(s)	1101
BtsIMutI	CAGTG	6 cut(s)	65, 1101, 1725, 1793, 1854, 2046
BtuMI	TCGCGA	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	101, 2460
CaiI	CAGNNNCTG	2 cut(s)	820, 2279
CciI	TCATGA	3 cut(s)	187, 1780, 2302
CfoI	GCGC	3 cut(s)	602, 627, 641
Cfr13I	GGNCC	5 cut(s)	397, 430, 664, 995, 2060
CpoI	CGGWCCG	1 cut(s)	397
CseI	GACGC	2 cut(s)	442, 580
Csp6I	GTAC	9 cut(s)	45, 371, 468, 619, 1139, 1269, 1457, 1920, 2228
CspI	CGGWCCG	1 cut(s)	397
CviQI	GTAC	9 cut(s)	45, 371, 468, 619, 1139, 1269, 1457, 1920, 2228
DdeI	CTNAG	8 cut(s)	207, 365, 660, 918, 1050, 1398, 1521, 1953
DpnI	GATC	9 cut(s)	112, 183, 473, 492, 741, 860, 1203, 1353, 1584
DpnII	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
DraI	TTTAAA	1 cut(s)	1822
Eam1104I	CTCTTC	3 cut(s)	161, 528, 2067
EarI	CTCTTC	3 cut(s)	161, 528, 2067
EciI	GGCGGA	1 cut(s)	602
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	5 cut(s)	338, 426, 1038, 2373, 2400
Eco147I	AGGCCT	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	1037
Eco47I	GGWCC	2 cut(s)	397, 2060
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	3 cut(s)	303, 1817, 2037
Eco88I	CYCGRG	2 cut(s)	434, 939
EcoICRI	GAGCTC	1 cut(s)	439
EcoNI	CCTNNNNNAGG	1 cut(s)	653
EcoO109I	RGGNCCY	2 cut(s)	430, 664
EcoRI	GAATTC	1 cut(s)	1744
EcoRII	CCWGG	2 cut(s)	654, 2209
EcoT14I	CCWWGG	5 cut(s)	338, 426, 1038, 2373, 2400
EcoT22I	ATGCAT	1 cut(s)	2328
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	5 cut(s)	338, 426, 1038, 2373, 2400
FaqI	GGGAC	1 cut(s)	578
FauI	CCCGC	2 cut(s)	396, 416
FauNDI	CATATG	2 cut(s)	865, 1000
Fnu4HI	GCNGC	8 cut(s)	32, 392, 815, 831, 969, 1056, 1496, 2456
FokI	GGATG	5 cut(s)	315, 494, 1892, 2132, 2207
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	8 cut(s)	32, 392, 815, 831, 969, 1056, 1496, 2456
FspBI	CTAG	8 cut(s)	288, 894, 963, 1182, 1212, 1539, 1979, 2259
GlaI	GCGC	3 cut(s)	601, 626, 640
GluI	GCNGC	8 cut(s)	32, 392, 815, 831, 969, 1056, 1496, 2456
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	4 cut(s)	1249, 1749, 1878, 2232
HaeIII	GGCC	4 cut(s)	431, 665, 746, 997
HapII	CCGG	3 cut(s)	395, 1877, 2058
HgaI	GACGC	2 cut(s)	442, 580
HhaI	GCGC	3 cut(s)	602, 627, 641
Hin1I	GRCGYC	2 cut(s)	453, 591
Hin6I	GCGC	3 cut(s)	600, 625, 639
HinP1I	GCGC	3 cut(s)	600, 625, 639
HincII	GTYRAC	2 cut(s)	1348, 1561
HindII	GTYRAC	2 cut(s)	1348, 1561
HpaI	GTTAAC	2 cut(s)	1348, 1561
HpaII	CCGG	3 cut(s)	395, 1877, 2058
HphI	GGTGA	7 cut(s)	542, 547, 622, 1163, 1229, 1235, 2440
Hpy166II	GTNNAC	4 cut(s)	45, 621, 1348, 1561
Hpy8I	GTNNAC	4 cut(s)	45, 621, 1348, 1561
Hpy99I	CGWCG	2 cut(s)	458, 569
HpyAV	CCTTC	9 cut(s)	209, 537, 838, 891, 939, 1185, 1214, 1596, 2470
HpyCH4III	ACNGT	5 cut(s)	69, 467, 500, 634, 1322
HpyF10VI	GCNNNNNNNGC	8 cut(s)	408, 450, 501, 576, 597, 977, 1055, 2455
HpyF3I	CTNAG	8 cut(s)	207, 365, 660, 918, 1050, 1398, 1521, 1953
Hsp92I	GRCGYC	2 cut(s)	453, 591
HspAI	GCGC	3 cut(s)	600, 625, 639
Kpn2I	TCCGGA	1 cut(s)	1876
KspAI	GTTAAC	2 cut(s)	1348, 1561
Kzo9I	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
LmnI	GCTCC	7 cut(s)	145, 509, 1423, 1492, 1730, 1849, 1859
Lsp1109I	GCAGC	5 cut(s)	18, 817, 826, 955, 2442
LweI	GCATC	2 cut(s)	328, 1816
MaeI	CTAG	8 cut(s)	288, 894, 963, 1182, 1212, 1539, 1979, 2259
MaeIII	GTNAC	7 cut(s)	174, 421, 1184, 1259, 1804, 1894, 2428
MalI	GATC	9 cut(s)	112, 183, 473, 492, 741, 860, 1203, 1353, 1584
MbiI	CCGCTC	5 cut(s)	402, 841, 1495, 1862, 2443
MboI	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
MfeI	CAATTG	1 cut(s)	1575
MflI	RGATCY	3 cut(s)	110, 1201, 1582
MhlI	GDGCHC	1 cut(s)	441
MlyI	GAGTC	4 cut(s)	352, 931, 1072, 1181
MmeI	TCCRAC	3 cut(s)	71, 356, 1470
Mph1103I	ATGCAT	1 cut(s)	2328
MroI	TCCGGA	1 cut(s)	1876
MroXI	GAANNNNTTC	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	1751
MspI	CCGG	3 cut(s)	395, 1877, 2058
MspR9I	CCNGG	3 cut(s)	656, 2058, 2211
MunI	CAATTG	1 cut(s)	1575
MvaI	CCWGG	2 cut(s)	656, 2211
MvnI	CGCG	3 cut(s)	495, 600, 625
MwoI	GCNNNNNNNGC	8 cut(s)	408, 450, 501, 576, 597, 977, 1055, 2455
NciI	CCSGG	1 cut(s)	2058
NcoI	CCATGG	1 cut(s)	1038
NdeI	CATATG	2 cut(s)	865, 1000
NdeII	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
NlaIV	GGNNCC	5 cut(s)	141, 1203, 2028, 2208, 2244
NmeAIII	GCCGAG	2 cut(s)	420, 567
NmuCI	GTSAC	4 cut(s)	421, 1184, 1804, 2428
NruI	TCGCGA	1 cut(s)	495
NsiI	ATGCAT	1 cut(s)	2328
NspI	RCATGY	2 cut(s)	103, 2462
PaeI	GCATGC	2 cut(s)	103, 2462
PaeR7I	CTCGAG	2 cut(s)	434, 939
PagI	TCATGA	3 cut(s)	187, 1780, 2302
PceI	AGGCCT	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	6 cut(s)	1754, 1873, 2012, 2162, 2255, 2387
Pfl23II	CGTACG	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	1334
PkrI	GCNGC	8 cut(s)	33, 393, 816, 832, 970, 1057, 1497, 2457
Ple19I	CGATCG	1 cut(s)	493
PleI	GAGTC	4 cut(s)	351, 931, 1072, 1181
PpsI	GAGTC	4 cut(s)	351, 931, 1072, 1181
PsiI	TTATAA	2 cut(s)	908, 1116
Psp124BI	GAGCTC	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	654, 2209
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	654, 2209
PspLI	CGTACG	1 cut(s)	467
PspN4I	GGNNCC	5 cut(s)	141, 1203, 2028, 2208, 2244
PspPI	GGNCC	5 cut(s)	397, 430, 664, 995, 2060
PspXI	VCTCGAGB	2 cut(s)	434, 939
PstNI	CAGNNNCTG	2 cut(s)	820, 2279
PsuI	RGATCY	3 cut(s)	110, 1201, 1582
PvuI	CGATCG	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	1751
RruI	TCGCGA	1 cut(s)	495
RsaI	GTAC	9 cut(s)	46, 372, 469, 620, 1140, 1270, 1458, 1921, 2229
RsaNI	GTAC	9 cut(s)	45, 371, 468, 619, 1139, 1269, 1457, 1920, 2228
Rsr2I	CGGWCCG	1 cut(s)	397
RsrII	CGGWCCG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	441
SatI	GCNGC	8 cut(s)	32, 392, 815, 831, 969, 1056, 1496, 2456
Sau3AI	GATC	9 cut(s)	110, 181, 471, 490, 739, 858, 1201, 1351, 1582
Sau96I	GGNCC	5 cut(s)	397, 430, 664, 995, 2060
ScaI	AGTACT	2 cut(s)	1140, 1270
SchI	GAGTC	4 cut(s)	352, 931, 1072, 1181
ScrFI	CCNGG	3 cut(s)	656, 2058, 2211
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	328, 1816
SfcI	CTRYAG	2 cut(s)	1641, 1899
Sfr274I	CTCGAG	2 cut(s)	434, 939
SinI	GGWCC	2 cut(s)	397, 2060
SlaI	CTCGAG	2 cut(s)	434, 939
SmlI	CTYRAG	3 cut(s)	434, 939, 2444
SmoI	CTYRAG	3 cut(s)	434, 939, 2444
SphI	GCATGC	2 cut(s)	103, 2462
SseBI	AGGCCT	1 cut(s)	746
SspMI	CTAG	8 cut(s)	288, 894, 963, 1182, 1212, 1539, 1979, 2259
SstI	GAGCTC	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	654, 2056, 2209
StyI	CCWWGG	5 cut(s)	338, 426, 1038, 2373, 2400
TaaI	ACNGT	5 cut(s)	69, 467, 500, 634, 1322
TaqI	TCGA	6 cut(s)	360, 435, 738, 805, 940, 1589
TaqII	GACCGA	1 cut(s)	1019
TatI	WGTACW	6 cut(s)	44, 618, 1138, 1268, 1456, 2227
TauI	GCSGC	3 cut(s)	394, 1058, 1498
TfiI	GAWTC	6 cut(s)	1754, 1873, 2012, 2162, 2255, 2387
TscAI	CASTG	6 cut(s)	72, 1101, 1732, 1800, 1861, 2053
TseFI	GTSAC	4 cut(s)	421, 1184, 1804, 2428
TseI	GCWGC	5 cut(s)	31, 814, 830, 968, 2455
Tsp45I	GTSAC	4 cut(s)	421, 1184, 1804, 2428
TspGWI	ACGGA	2 cut(s)	553, 2219
TspRI	CASTG	6 cut(s)	72, 1101, 1732, 1800, 1861, 2053
Van91I	CCANNNNNTGG	1 cut(s)	1334
VpaK11BI	GGWCC	2 cut(s)	397, 2060
XagI	CCTNNNNNAGG	1 cut(s)	653
XapI	RAATTY	7 cut(s)	241, 298, 324, 986, 1744, 1776, 1905
XceI	RCATGY	2 cut(s)	103, 2462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XhoI	CTCGAG	2 cut(s)	434, 939
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	8 cut(s)	288, 894, 963, 1182, 1212, 1539, 1979, 2259
ZrmI	AGTACT	2 cut(s)	1140, 1270
Zsp2I	ATGCAT	1 cut(s)	2328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.