Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000409.1

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

41183 .. 44483

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000409.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

atgggcttcttcgacctgagcgtaccctacaccgacctcccgccgccggaccgctcaacccgcgcgaagctcgtgaccaaggccctcgagctcggctactccggcgtcgcctacaaccgtacgatcaagggcgtcatgtccgatcgcgaccgttgctccatccccctccttactctcccttctctcctcaagcactctcctcacctcacctcctccgtcggcttccaccgcgacctcctcggcgtcccacgcgccacccctttccgccagtacacgcgcctcaccgtctgcgccgaaacccctgcccaggctcaggccctcaattccggcaaccccgttttgaagacctacgatttggtggctgtcaagcccatgaaccagtccgctttcgatcaggcctgtgagaaactggaggtagatataattgcgattgatttttcggagaagttaccatttcgattgaagcagcctctggttaaagctgccattgagcggaaggtgtattttgagatcacatatgcagggcttattgccgatgttcaaactagaaggcaaattataaccaatgctaagttattggtagattggactcgaggaaggaatataattatctctagtgctgccccaactgcgaatgaatttagagggccatatgatgttgcaaacttaatgtcattgctcggtctctccatggaacgagctaaggcggctatttcaagaaattgtaggactcttatatctaatgcagtgagaaaaaaacactattataaggaagccattagagttgaagtactaccatcaggtcaagaaagtgatgggaacaaaccttcgtctagtgactcttttaattgggatcccatctctagtggtgaaggtgatttgcttttagatgaattggcaaaggctttcagtaactccagtactaaagcaaccaaaatggtcaaagccattgattttgcttcggttattgacagcatgccatcacttggatttcaagttaacgatcttatatctggaactaatgtggttgtgtcacaaccattggctactcagaaaatcatcgtttctgctccccagttaaatgtgcaatcagttgcaactgatggagtacaagaacaatctgttttatgtgatactatgttggagcggcaaaggttcaaaagcaaagatcctcagaaattatattcatctagtgatactaccaaagctgttaacaatgttattccaattgaggatcctttgataaccactagagcagaaccaaatagtccagatgaaacagatgggattgccacagatattcatgatgtgcaatcacagaagtctgcgattgcaaatgctgttaatgatgttatggaaattgaagttcctacaaccactggagcagaaccaacgaattcagctgaatcaatggggattacaaaagaaattcatgatgtgcaatcactgaagtctgtgactgccaaaacttttaaagatgctatggaaattgaagctcctacgaccactagagcggaaacaaagaatccggatggaatagatggggttactacagaaattcttaatgttctatcacagaagagtatgactaattgtgaattgaatgttgtgccatctcaggttaatttaacatatcatgcactagacattgggttgagtgttgcttgtaatcctgaatcaggagttcaagttcccactaattatcaggacagtgatattcccggtcctcataatgaagaggctgatagtattaaaaataatgatatacaaagtgatttagtggatgaagttctaacaggtaaagaaaaaaaatctttgcctctggattcagcattggataaaagtattttggaagtggatgaattgacggaacctggagaggatgtagttgtacttgcaaatcaggttcctgttctggattctagtgatgagatgacagcaactgatgattattcagttgcaaatcatgagacagcagaggtaataatgcatgagcaagaacatgggaaagctgatgttgaattgagctatccagccttggttcagtctgaatcagggaaacccaaggcaaaaaggaagaaacctcatcaggtgacatttcttcctctcaagcgattgctgcatgctgcaccttttaagaaggcttggaaaagtaaaaggagacataagatggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

725

Amino Acids

79.32

Weight (kDa)

5.44

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 768
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccBSI	CCGCTC	4 cut(s)	54, 493, 1147, 1514
AccII	CGCG	6 cut(s)	63, 65, 147, 231, 252, 277
AccIII	TCCGGA	1 cut(s)	1528
AclWI	GGATC	5 cut(s)	848, 861, 1163, 1229, 1242
AcsI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
AcuI	CTGAAG	1 cut(s)	1469
AcyI	GRCGYC	3 cut(s)	105, 132, 243
AfaI	GTAC	7 cut(s)	24, 121, 272, 792, 922, 1110, 1893
AfiI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1679
AjnI	CCWGG	2 cut(s)	306, 1873
AloI	GAACNNNNNNTCC	2 cut(s)	1674, 1706
AluBI	AGCT	9 cut(s)	70, 91, 482, 701, 1208, 1403, 1496, 2012, 2028
AluI	AGCT	9 cut(s)	70, 91, 482, 701, 1208, 1403, 1496, 2012, 2028
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	689, 1964, 2155
AlwI	GGATC	5 cut(s)	848, 861, 1163, 1229, 1242
AlwNI	CAGNNNCTG	2 cut(s)	472, 1943
Ama87I	CYCGRG	2 cut(s)	86, 591
Aor13HI	TCCGGA	1 cut(s)	1528
AoxI	GGCC	4 cut(s)	81, 315, 396, 647
ApeKI	GCWGC	5 cut(s)	466, 482, 620, 2119, 2126
ApoI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 656, 688
AspLEI	GCGC	4 cut(s)	65, 254, 279, 293
AspS9I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
AsuC2I	CCSGG	1 cut(s)	1722
AsuHPI	GGTGA	6 cut(s)	194, 199, 274, 881, 887, 2104
AvaI	CYCGRG	2 cut(s)	86, 591
AvaII	GGWCC	2 cut(s)	49, 1724
BamHI	GGATCC	2 cut(s)	853, 1234
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	469, 478, 607, 2106, 2113
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	308, 1875
BcnI	CCSGG	1 cut(s)	1722
BcoDI	GTCTC	3 cut(s)	689, 1964, 2155
BfaI	CTAG	9 cut(s)	546, 615, 834, 864, 1191, 1251, 1509, 1643, 1923
BfmI	CTRYAG	1 cut(s)	1551
BisI	GCNGC	8 cut(s)	44, 467, 483, 621, 708, 1148, 2120, 2127
BlsI	GCNGC	8 cut(s)	45, 468, 484, 622, 709, 1149, 2121, 2128
BmcAI	AGTACT	2 cut(s)	792, 922
Bme1390I	CCNGG	3 cut(s)	308, 1722, 1875
Bme18I	GGWCC	2 cut(s)	49, 1724
BmeT110I	CYCGRG	2 cut(s)	86, 591
BmgT120I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
BmiI	GGNNCC	4 cut(s)	855, 1236, 1872, 1908
BmrFI	CCNGG	3 cut(s)	308, 1722, 1875
BmrI	ACTGGG	1 cut(s)	1069
BmsI	GCATC	1 cut(s)	1468
BmuI	ACTGGG	1 cut(s)	1069
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	4 cut(s)	431, 901, 1401, 1896
Bpu10I	CCTNAGC	3 cut(s)	17, 312, 702
BpuEI	CTTGAG	2 cut(s)	173, 2093
BpuMI	CCSGG	1 cut(s)	1722
BsaHI	GRCGYC	3 cut(s)	105, 132, 243
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2037, 2064
BsaWI	WCCGGW	1 cut(s)	1528
BsaXI	ACNNNNNCTCC	8 cut(s)	140, 170, 194, 224, 1674, 1704, 1869, 1899
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1679
Bse1I	ACTGG	6 cut(s)	268, 379, 414, 918, 1075, 1384
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	1528
BseBI	CCWGG	2 cut(s)	308, 1875
BseDI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2037, 2064
BseGI	GGATG	5 cut(s)	159, 1537, 1789, 1864, 1888
BseLI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1679
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	5 cut(s)	8, 326, 1064, 1187, 1631
BseNI	ACTGG	6 cut(s)	268, 379, 414, 918, 1075, 1384
BseRI	GAGGAG	4 cut(s)	176, 189, 202, 227
BseXI	GCAGC	5 cut(s)	469, 478, 607, 2106, 2113
BsgI	GTGCAG	1 cut(s)	2112
Bsh1236I	CGCG	6 cut(s)	63, 65, 147, 231, 252, 277
Bsh1285I	CGRYCG	2 cut(s)	145, 151
BshFI	GGCC	4 cut(s)	83, 317, 398, 649
BsiEI	CGRYCG	2 cut(s)	145, 151
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	86, 591
BsiSI	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1679
BsmAI	GTCTC	3 cut(s)	689, 1964, 2155
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	83, 317, 398, 649
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	2 cut(s)	86, 591
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	1528
Bsp143I	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
Bsp19I	CCATGG	1 cut(s)	690
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	83, 317, 398, 649
BspCNI	CTCAG	5 cut(s)	9, 325, 1063, 1186, 1630
BspEI	TCCGGA	1 cut(s)	1528
BspFNI	CGCG	6 cut(s)	63, 65, 147, 231, 252, 277
BspHI	TCATGA	3 cut(s)	1303, 1432, 1966
BspLI	GGNNCC	4 cut(s)	855, 1236, 1872, 1908
BspPI	GGATC	5 cut(s)	848, 861, 1163, 1229, 1242
BspTNI	GGTCTC	1 cut(s)	689
BsrBI	CCGCTC	4 cut(s)	54, 493, 1147, 1514
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	6 cut(s)	268, 379, 414, 918, 1075, 1384
BssECI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2037, 2064
BssMI	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
BssNI	GRCGYC	3 cut(s)	105, 132, 243
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	4 cut(s)	78, 690, 2037, 2064
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	308, 1875
Bst4CI	ACNGT	4 cut(s)	119, 152, 286, 1712
Bst6I	CTCTTC	2 cut(s)	1574, 1731
BstACI	GRCGYC	3 cut(s)	105, 132, 243
BstC8I	GCNNGC	2 cut(s)	977, 2124
BstDEI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
BstDSI	CCRYGG	1 cut(s)	690
BstENI	CCTNNNNNAGG	1 cut(s)	1677
BstF5I	GGATG	5 cut(s)	159, 1537, 1789, 1864, 1888
BstFNI	CGCG	6 cut(s)	63, 65, 147, 231, 252, 277
BstHHI	GCGC	4 cut(s)	65, 254, 279, 293
BstKTI	GATC	8 cut(s)	126, 145, 394, 513, 856, 1006, 1171, 1237
BstMAI	GTCTC	3 cut(s)	689, 1964, 2155
BstMBI	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
BstMCI	CGRYCG	2 cut(s)	145, 151
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2119
BstNI	CCWGG	2 cut(s)	308, 1875
BstNSI	RCATGY	2 cut(s)	979, 2126
BstSCI	CCNGG	3 cut(s)	306, 1720, 1873
BstSFI	CTRYAG	1 cut(s)	1551
BstUI	CGCG	6 cut(s)	63, 65, 147, 231, 252, 277
BstV1I	GCAGC	5 cut(s)	469, 478, 607, 2106, 2113
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	3 cut(s)	853, 1168, 1234
BstYI	RGATCY	3 cut(s)	853, 1168, 1234
BsuRI	GGCC	4 cut(s)	83, 317, 398, 649
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	159, 1537, 1789, 1864, 1888
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	4 cut(s)	753, 1377, 1445, 1717
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	977, 2124
CaiI	CAGNNNCTG	2 cut(s)	472, 1943
CciI	TCATGA	3 cut(s)	1303, 1432, 1966
CfoI	GCGC	4 cut(s)	65, 254, 279, 293
Cfr13I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	3 cut(s)	94, 121, 232
Csp6I	GTAC	7 cut(s)	23, 120, 271, 791, 921, 1109, 1892
CspI	CGGWCCG	1 cut(s)	49
CviQI	GTAC	7 cut(s)	23, 120, 271, 791, 921, 1109, 1892
DdeI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
DpnI	GATC	8 cut(s)	125, 144, 393, 512, 855, 1005, 1170, 1236
DpnII	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
DraI	TTTAAA	1 cut(s)	1474
Eam1104I	CTCTTC	2 cut(s)	1574, 1731
EarI	CTCTTC	2 cut(s)	1574, 1731
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	78, 690, 2037, 2064
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	49, 1724
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	1469
Eco88I	CYCGRG	2 cut(s)	86, 591
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	1677
EcoO109I	RGGNCCY	2 cut(s)	82, 316
EcoRI	GAATTC	1 cut(s)	1396
EcoRII	CCWGG	2 cut(s)	306, 1873
EcoT14I	CCWWGG	4 cut(s)	78, 690, 2037, 2064
EcoT22I	ATGCAT	1 cut(s)	1992
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	78, 690, 2037, 2064
FaqI	GGGAC	1 cut(s)	230
FauI	CCCGC	2 cut(s)	48, 68
FauNDI	CATATG	2 cut(s)	517, 652
Fnu4HI	GCNGC	8 cut(s)	44, 467, 483, 621, 708, 1148, 2120, 2127
FokI	GGATG	5 cut(s)	146, 1544, 1796, 1871, 1895
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	8 cut(s)	44, 467, 483, 621, 708, 1148, 2120, 2127
FspBI	CTAG	9 cut(s)	546, 615, 834, 864, 1191, 1251, 1509, 1643, 1923
GlaI	GCGC	4 cut(s)	64, 253, 278, 292
GluI	GCNGC	8 cut(s)	44, 467, 483, 621, 708, 1148, 2120, 2127
GsuI	CTGGAG	4 cut(s)	431, 901, 1401, 1896
HaeIII	GGCC	4 cut(s)	83, 317, 398, 649
HapII	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
HgaI	GACGC	3 cut(s)	94, 121, 232
HhaI	GCGC	4 cut(s)	65, 254, 279, 293
Hin1I	GRCGYC	3 cut(s)	105, 132, 243
Hin6I	GCGC	4 cut(s)	63, 252, 277, 291
HinP1I	GCGC	4 cut(s)	63, 252, 277, 291
HincII	GTYRAC	2 cut(s)	1000, 1213
HindII	GTYRAC	2 cut(s)	1000, 1213
HinfI	GANTC	9 cut(s)	589, 730, 839, 1406, 1525, 1676, 1826, 1919, 2051
HpaI	GTTAAC	2 cut(s)	1000, 1213
HpaII	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
HphI	GGTGA	6 cut(s)	194, 199, 274, 881, 887, 2104
Hpy166II	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy188I	TCNGA	5 cut(s)	142, 442, 1053, 1176, 2050
Hpy8I	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy99I	CGWCG	2 cut(s)	110, 221
HpyAV	CCTTC	7 cut(s)	189, 490, 543, 591, 837, 866, 2134
HpyCH4III	ACNGT	4 cut(s)	119, 152, 286, 1712
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2119
HpyF3I	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
Hsp92I	GRCGYC	3 cut(s)	105, 132, 243
HspAI	GCGC	4 cut(s)	63, 252, 277, 291
Kpn2I	TCCGGA	1 cut(s)	1528
KspAI	GTTAAC	2 cut(s)	1000, 1213
Kzo9I	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
LmnI	GCTCC	5 cut(s)	161, 1075, 1144, 1382, 1501
Lsp1109I	GCAGC	5 cut(s)	469, 478, 607, 2106, 2113
LweI	GCATC	1 cut(s)	1468
MaeI	CTAG	9 cut(s)	546, 615, 834, 864, 1191, 1251, 1509, 1643, 1923
MaeIII	GTNAC	8 cut(s)	73, 447, 836, 911, 1032, 1456, 1546, 2092
MalI	GATC	8 cut(s)	125, 144, 393, 512, 855, 1005, 1170, 1236
MbiI	CCGCTC	4 cut(s)	54, 493, 1147, 1514
MboI	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
MboII	GAAGA	5 cut(s)	355, 1591, 1748, 2089, 2093
MfeI	CAATTG	1 cut(s)	1227
MflI	RGATCY	3 cut(s)	853, 1168, 1234
MhlI	GDGCHC	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	583, 724, 833
MmeI	TCCRAC	1 cut(s)	1122
Mph1103I	ATGCAT	1 cut(s)	1992
MroI	TCCGGA	1 cut(s)	1528
MspA1I	CMGCKG	1 cut(s)	1403
MspI	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
MspR9I	CCNGG	3 cut(s)	308, 1722, 1875
MunI	CAATTG	1 cut(s)	1227
MvaI	CCWGG	2 cut(s)	308, 1875
MvnI	CGCG	6 cut(s)	63, 65, 147, 231, 252, 277
MwoI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2119
NciI	CCSGG	1 cut(s)	1722
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	2 cut(s)	517, 652
NdeII	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
NlaIV	GGNNCC	4 cut(s)	855, 1236, 1872, 1908
NmeAIII	GCCGAG	2 cut(s)	72, 219
NmuCI	GTSAC	5 cut(s)	73, 836, 1032, 1456, 2092
NruI	TCGCGA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	1992
NspI	RCATGY	2 cut(s)	979, 2126
PaeI	GCATGC	2 cut(s)	979, 2126
PaeR7I	CTCGAG	2 cut(s)	86, 591
PagI	TCATGA	3 cut(s)	1303, 1432, 1966
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	6 cut(s)	1406, 1525, 1676, 1826, 1919, 2051
Pfl23II	CGTACG	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	8 cut(s)	45, 468, 484, 622, 709, 1149, 2121, 2128
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	583, 724, 833
PpsI	GAGTC	3 cut(s)	583, 724, 833
PsiI	TTATAA	2 cut(s)	560, 768
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	306, 1873
PspGI	CCWGG	2 cut(s)	306, 1873
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	855, 1236, 1872, 1908
PspPI	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
PspXI	VCTCGAGB	2 cut(s)	86, 591
PstNI	CAGNNNCTG	2 cut(s)	472, 1943
PsuI	RGATCY	3 cut(s)	853, 1168, 1234
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	1403
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	7 cut(s)	24, 121, 272, 792, 922, 1110, 1893
RsaNI	GTAC	7 cut(s)	23, 120, 271, 791, 921, 1109, 1892
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	8 cut(s)	44, 467, 483, 621, 708, 1148, 2120, 2127
Sau3AI	GATC	8 cut(s)	123, 142, 391, 510, 853, 1003, 1168, 1234
Sau96I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
ScaI	AGTACT	2 cut(s)	792, 922
SchI	GAGTC	3 cut(s)	583, 724, 833
ScrFI	CCNGG	3 cut(s)	308, 1722, 1875
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	1468
SfcI	CTRYAG	1 cut(s)	1551
Sfr274I	CTCGAG	2 cut(s)	86, 591
SinI	GGWCC	2 cut(s)	49, 1724
SlaI	CTCGAG	2 cut(s)	86, 591
SmlI	CTYRAG	4 cut(s)	86, 188, 591, 2108
SmoI	CTYRAG	4 cut(s)	86, 188, 591, 2108
SphI	GCATGC	2 cut(s)	979, 2126
SseBI	AGGCCT	1 cut(s)	398
SspMI	CTAG	9 cut(s)	546, 615, 834, 864, 1191, 1251, 1509, 1643, 1923
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	306, 1720, 1873
StyI	CCWWGG	4 cut(s)	78, 690, 2037, 2064
TaaI	ACNGT	4 cut(s)	119, 152, 286, 1712
TaqI	TCGA	5 cut(s)	12, 87, 390, 457, 592
TaqII	GACCGA	1 cut(s)	671
TatI	WGTACW	5 cut(s)	270, 790, 920, 1108, 1891
TauI	GCSGC	3 cut(s)	46, 710, 1150
TfiI	GAWTC	6 cut(s)	1406, 1525, 1676, 1826, 1919, 2051
TscAI	CASTG	4 cut(s)	753, 1384, 1452, 1717
TseFI	GTSAC	5 cut(s)	73, 836, 1032, 1456, 2092
TseI	GCWGC	5 cut(s)	466, 482, 620, 2119, 2126
Tsp45I	GTSAC	5 cut(s)	73, 836, 1032, 1456, 2092
TspGWI	ACGGA	2 cut(s)	205, 1883
TspRI	CASTG	4 cut(s)	753, 1384, 1452, 1717
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	2 cut(s)	49, 1724
XagI	CCTNNNNNAGG	1 cut(s)	1677
XapI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
XceI	RCATGY	2 cut(s)	979, 2126
XhoI	CTCGAG	2 cut(s)	86, 591
XspI	CTAG	9 cut(s)	546, 615, 834, 864, 1191, 1251, 1509, 1643, 1923
ZrmI	AGTACT	2 cut(s)	792, 922
Zsp2I	ATGCAT	1 cut(s)	1992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.