Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

13915013 .. 13915950

Gene Structure 938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGTCCTTGGCCAATTTCCAAATGCCCCTCATCTTCTTCTTTTTCGTGAGTTCCCTCTTTTTCATCATCTCCTCCAATGCAGCCACTTTCGAAATCCGTAATGAGTGCCCTTACACCGTCTGGGCAGCCGCCTCTCCTGGTGGAGGCCGTCGCCTGGACCGCGGCCAGAGCTGGACACTAAACGTTGCCCCGGGGACGGCCATGGCTCGCATATGGGGGCGTACCAATTGCAATTTTGATAGTAGTGGCCGCGGCCGTTGTGCCACGGGAGATTGTGGGGCCTTGGAGTGCAAGGGATGGGGAGTCCCTCCCAACACCTTGGCAGAATATGCCCTTAACCAGTTCGGCAACATGGACTTCATTGACATTTCCTTAGTCGATGGCTTCAACATTCCAATGGACTTTAGCCCGACCACCGGCCGGTGTAGGGGAATTCGGTGCACTGCGGACATCAATGGGCAGTGTCCTCGAGAGTTGAGGGTACCTAGTGGGTGCAATAACCCTTGCACTGTTTTTAAGACCAATGAATATTGCTGCACAAATGGGCAGGGGAGCTGTGGACCGACAAATTTCTCAAAATTTTTCAAGACTAGGTGCCCGGATGCTTATAGTTACCCTCAGGATGATCCTACTAGCACATTTACATGCCCTGGTGGGACTAACTATAGGGTTGTGTTTTGCCCCAGAGGAAACCCTGGTAATTTCCCTTTGGAGATGATAACTGACAAGAGTACGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

247

Amino Acids

27.06

Weight (kDa)

7.84

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 229	2.8e-62	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	2 cut(s)	484, 597
AccII	CGCG	2 cut(s)	165, 255
AciI	CCGC	6 cut(s)	132, 163, 165, 253, 255, 449
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	6 cut(s)	12, 166, 201, 250, 256, 421
AcsI	RAATTY	3 cut(s)	435, 571, 581
AfaI	GTAC	3 cut(s)	226, 486, 736
AfiI	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
AgsI	TTSAA	2 cut(s)	391, 589
AjnI	CCWGG	4 cut(s)	139, 156, 652, 697
AluBI	AGCT	2 cut(s)	174, 558
AluI	AGCT	2 cut(s)	174, 558
Alw21I	GWGCWC	1 cut(s)	446
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	623
Ama87I	CYCGRG	2 cut(s)	193, 471
AoxI	GGCC	8 cut(s)	12, 148, 166, 201, 250, 256, 282, 421
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	83, 128, 537
ApoI	RAATTY	3 cut(s)	435, 571, 581
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	3 cut(s)	160, 282, 563
AsuC2I	CCSGG	3 cut(s)	194, 195, 602
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	2 cut(s)	193, 471
AvaII	GGWCC	2 cut(s)	160, 563
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	3 cut(s)	113, 446, 602
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	484, 597
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	95, 140, 524
BccI	CCATC	2 cut(s)	294, 377
BceAI	ACGGC	3 cut(s)	135, 216, 243
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	4 cut(s)	141, 158, 654, 699
BcnI	CCSGG	3 cut(s)	194, 195, 602
BfaI	CTAG	3 cut(s)	489, 594, 636
BfmI	CTRYAG	1 cut(s)	667
BisI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
BlsI	GCNGC	7 cut(s)	85, 130, 133, 167, 254, 257, 539
Bme1390I	CCNGG	7 cut(s)	141, 158, 194, 195, 602, 654, 699
Bme18I	GGWCC	2 cut(s)	160, 563
BmeT110I	CYCGRG	2 cut(s)	193, 471
BmgT120I	GGNCC	3 cut(s)	160, 282, 563
BmiI	GGNNCC	3 cut(s)	283, 486, 599
BmrFI	CCNGG	7 cut(s)	141, 158, 194, 195, 602, 654, 699
BmsI	GCATC	1 cut(s)	595
Bpu14I	TTCGAA	1 cut(s)	93
BpuMI	CCSGG	3 cut(s)	194, 195, 602
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
Bse118I	RCCGGY	2 cut(s)	419, 423
Bse1I	ACTGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	4 cut(s)	141, 158, 654, 699
BseGI	GGATG	3 cut(s)	305, 610, 631
BseLI	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	3 cut(s)	113, 446, 602
BseX3I	CGGCCG	2 cut(s)	256, 421
BseXI	GCAGC	3 cut(s)	95, 140, 524
BsgI	GTGCAG	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	165, 255
Bsh1285I	CGRYCG	2 cut(s)	259, 424
BshFI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BshNI	GGYRCC	2 cut(s)	484, 597
BsiEI	CGRYCG	2 cut(s)	259, 424
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	2 cut(s)	193, 471
BsiSI	CCGG	4 cut(s)	194, 420, 424, 602
BslFI	GGGAC	3 cut(s)	211, 293, 673
BslI	CCNNNNNNNGG	6 cut(s)	146, 157, 199, 419, 423, 430
BsmFI	GGGAC	3 cut(s)	211, 293, 673
BsnI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BsoBI	CYCGRG	2 cut(s)	193, 471
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	113, 446, 602
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	6 cut(s)	132, 163, 165, 253, 255, 449
BspANI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	2 cut(s)	165, 255
BspLI	GGNNCC	3 cut(s)	283, 486, 599
BspPI	GGATC	1 cut(s)	623
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	2 cut(s)	484, 597
BsrFI	RCCGGY	2 cut(s)	419, 423
BsrI	ACTGG	1 cut(s)	343
BssAI	RCCGGY	2 cut(s)	419, 423
BssMI	GATC	1 cut(s)	628
BssT1I	CCWWGG	4 cut(s)	9, 204, 285, 321
Bst2UI	CCWGG	4 cut(s)	141, 158, 654, 699
Bst4CI	ACNGT	2 cut(s)	121, 514
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	376, 621
BstDSI	CCRYGG	4 cut(s)	163, 204, 253, 267
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	305, 610, 631
BstFNI	CGCG	2 cut(s)	165, 255
BstKTI	GATC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	628
BstMCI	CGRYCG	2 cut(s)	259, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 171, 332
BstNI	CCWGG	4 cut(s)	141, 158, 654, 699
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	7 cut(s)	139, 156, 192, 193, 600, 652, 697
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	3 cut(s)	113, 446, 602
BstUI	CGCG	2 cut(s)	165, 255
BstV1I	GCAGC	3 cut(s)	95, 140, 524
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstZI	CGGCCG	2 cut(s)	256, 421
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
BtgI	CCRYGG	4 cut(s)	163, 204, 253, 267
BtsCI	GGATG	3 cut(s)	305, 610, 631
BtsI	GCAGTG	2 cut(s)	444, 470
BtsIMutI	CAGTG	3 cut(s)	444, 470, 510
Cac8I	GCNNGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	419, 423
Cfr13I	GGNCC	3 cut(s)	160, 282, 563
Cfr42I	CCGCGG	2 cut(s)	166, 256
Cfr9I	CCCGGG	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	225, 485, 735
CviAII	CATG	3 cut(s)	205, 355, 648
CviQI	GTAC	3 cut(s)	225, 485, 735
DdeI	CTNAG	2 cut(s)	376, 621
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
EaeI	YGGCCR	6 cut(s)	12, 166, 201, 250, 256, 421
EagI	CGGCCG	2 cut(s)	256, 421
EclXI	CGGCCG	2 cut(s)	256, 421
Eco130I	CCWWGG	4 cut(s)	9, 204, 285, 321
Eco47I	GGWCC	2 cut(s)	160, 563
Eco52I	CGGCCG	2 cut(s)	256, 421
Eco81I	CCTNAGG	1 cut(s)	621
Eco88I	CYCGRG	2 cut(s)	193, 471
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	4 cut(s)	139, 156, 652, 697
EcoT14I	CCWWGG	4 cut(s)	9, 204, 285, 321
ErhI	CCWWGG	4 cut(s)	9, 204, 285, 321
FaeI	CATG	3 cut(s)	208, 358, 651
FaiI	YATR	8 cut(s)	206, 215, 217, 333, 356, 612, 649, 669
FaqI	GGGAC	3 cut(s)	211, 293, 673
FatI	CATG	3 cut(s)	204, 354, 647
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
FokI	GGATG	3 cut(s)	312, 617, 638
Fsp4HI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
FspBI	CTAG	3 cut(s)	489, 594, 636
GluI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
HaeIII	GGCC	8 cut(s)	14, 150, 168, 203, 252, 258, 284, 423
HapII	CCGG	4 cut(s)	194, 420, 424, 602
Hin1II	CATG	3 cut(s)	208, 358, 651
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	4 cut(s)	194, 420, 424, 602
Hpy166II	GTNNAC	2 cut(s)	444, 563
Hpy188III	TCNNGA	4 cut(s)	49, 473, 589, 623
Hpy8I	GTNNAC	2 cut(s)	444, 563
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	121, 514
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	83, 234, 294, 444, 498, 510, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 171, 332
HpyF3I	CTNAG	2 cut(s)	376, 621
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	208, 358, 651
KpnI	GGTACC	1 cut(s)	488
KspI	CCGCGG	2 cut(s)	166, 256
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	3 cut(s)	95, 140, 524
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	489, 594, 636
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	2 cut(s)	28, 31
MfeI	CAATTG	1 cut(s)	229
MhlI	GDGCHC	3 cut(s)	113, 446, 602
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	7 cut(s)	16, 229, 235, 435, 571, 581, 703
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	315
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	339, 519
MslI	CAYNNNNRTG	2 cut(s)	398, 646
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	165, 255
MspI	CCGG	4 cut(s)	194, 420, 424, 602
MspR9I	CCNGG	7 cut(s)	141, 158, 194, 195, 602, 654, 699
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	4 cut(s)	141, 158, 654, 699
MvnI	CGCG	2 cut(s)	165, 255
MwoI	GCNNNNNNNGC	3 cut(s)	162, 171, 332
NciI	CCSGG	3 cut(s)	194, 195, 602
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	3 cut(s)	208, 358, 651
NlaIV	GGNNCC	3 cut(s)	283, 486, 599
NspI	RCATGY	1 cut(s)	651
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	471
PkrI	GCNGC	7 cut(s)	85, 130, 133, 167, 254, 257, 539
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	4 cut(s)	139, 156, 652, 697
PspGI	CCWGG	4 cut(s)	139, 156, 652, 697
PspN4I	GGNNCC	3 cut(s)	283, 486, 599
PspPI	GGNCC	3 cut(s)	160, 282, 563
RsaI	GTAC	3 cut(s)	226, 486, 736
RsaNI	GTAC	3 cut(s)	225, 485, 735
RseI	CAYNNNNRTG	2 cut(s)	398, 646
SacII	CCGCGG	2 cut(s)	166, 256
SaqAI	TTAA	2 cut(s)	339, 519
SatI	GCNGC	7 cut(s)	84, 129, 132, 166, 253, 256, 538
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	3 cut(s)	160, 282, 563
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	7 cut(s)	141, 158, 194, 195, 602, 654, 699
SduI	GDGCHC	3 cut(s)	113, 446, 602
SetI	ASST	6 cut(s)	176, 189, 323, 490, 560, 599
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	667
Sfr274I	CTCGAG	1 cut(s)	471
Sfr303I	CCGCGG	2 cut(s)	166, 256
SfuI	TTCGAA	1 cut(s)	93
SgrBI	CCGCGG	2 cut(s)	166, 256
SinI	GGWCC	2 cut(s)	160, 563
SlaI	CTCGAG	1 cut(s)	471
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	398, 646
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	7 cut(s)	16, 229, 235, 435, 571, 581, 703
SsiI	CCGC	6 cut(s)	132, 163, 165, 253, 255, 449
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	3 cut(s)	489, 594, 636
StyD4I	CCNGG	7 cut(s)	139, 156, 192, 193, 600, 652, 697
StyI	CCWWGG	4 cut(s)	9, 204, 285, 321
TaaI	ACNGT	2 cut(s)	121, 514
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	3 cut(s)	93, 381, 472
TaqII	GACCGA	1 cut(s)	580
TasI	AATT	7 cut(s)	16, 229, 235, 435, 571, 581, 703
TauI	GCSGC	4 cut(s)	134, 168, 255, 258
Tru1I	TTAA	2 cut(s)	339, 519
Tru9I	TTAA	2 cut(s)	339, 519
TscAI	CASTG	3 cut(s)	451, 470, 517
TseI	GCWGC	3 cut(s)	83, 128, 537
TspDTI	ATGAA	4 cut(s)	17, 55, 352, 543
TspGWI	ACGGA	1 cut(s)	89
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	3 cut(s)	451, 470, 517
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	160, 563
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	435, 571, 581
XceI	RCATGY	1 cut(s)	651
XhoI	CTCGAG	1 cut(s)	471
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	3 cut(s)	489, 594, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.