Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8004892.1

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 502

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8004892.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atggaacgagctaaggcggctatttcaagaaattgtaggactcttatatctaatgcagtgagaaaaaaacactattataaggaagccattagagttgaagtactaccatcaggtcaagaaagtgatgggaacaaaccttcgtctagtgactcttttaattgggatcccatctctagtggtgaaggtgatttgcttttagatgaattggcaaaggctttcagtaactccagtactaaagcaaccaaaatggtcaaagccattgattttgcttcggttattgacagcatgccatcacttggatttcaagttaacgatcttatatctggaactaatgtggttgtgtcacaaccattggctactcagaaaaacatcgtttctgctccccagttacatgtgcaatcagttgcaactgatggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

139

Amino Acids

14.93

Weight (kDa)

6.72

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	2 cut(s)	158, 171
AfaI	GTAC	2 cut(s)	102, 232
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	27, 98, 305
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	2 cut(s)	158, 171
AsuHPI	GGTGA	2 cut(s)	191, 197
BamHI	GGATCC	1 cut(s)	163
BccI	CCATC	5 cut(s)	115, 119, 176, 298, 407
BfaI	CTAG	2 cut(s)	144, 174
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmcAI	AGTACT	2 cut(s)	102, 232
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	228, 385
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	228, 385
BslI	CCNNNNNNNGG	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	163, 313
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	158, 171
BsrI	ACTGG	2 cut(s)	228, 385
BssMI	GATC	2 cut(s)	163, 313
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	12, 360
BstKTI	GATC	2 cut(s)	166, 316
BstMBI	GATC	2 cut(s)	163, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	2 cut(s)	289, 395
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	101, 231
CviAII	CATG	2 cut(s)	286, 392
CviJI	RGCY	6 cut(s)	11, 20, 86, 215, 257, 356
CviKI_1	RGCY	6 cut(s)	11, 20, 86, 215, 257, 356
CviQI	GTAC	2 cut(s)	101, 231
DdeI	CTNAG	2 cut(s)	12, 360
DpnI	GATC	2 cut(s)	165, 315
DpnII	GATC	2 cut(s)	163, 313
FaeI	CATG	2 cut(s)	289, 395
FaiI	YATR	5 cut(s)	47, 78, 287, 320, 393
FatI	CATG	2 cut(s)	285, 391
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	144, 174
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	211
Hin1II	CATG	2 cut(s)	289, 395
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	40, 149
HpaI	GTTAAC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	191, 197
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	3 cut(s)	27, 116, 324
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	147, 176
HpyCH4V	TGCA	3 cut(s)	56, 397, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	12, 360
Hsp92II	CATG	2 cut(s)	289, 395
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	163, 313
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	4 cut(s)	96, 241, 309, 398
MaeI	CTAG	2 cut(s)	144, 174
MaeIII	GTNAC	4 cut(s)	146, 221, 342, 387
MalI	GATC	2 cut(s)	165, 315
MboI	GATC	2 cut(s)	163, 313
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	3 cut(s)	31, 157, 203
MlyI	GAGTC	2 cut(s)	34, 143
MseI	TTAA	2 cut(s)	156, 309
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	2 cut(s)	163, 313
NlaIII	CATG	2 cut(s)	289, 395
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	146, 342
NspI	RCATGY	2 cut(s)	289, 395
PaeI	GCATGC	1 cut(s)	289
PciI	ACATGT	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	2 cut(s)	34, 143
PpsI	GAGTC	2 cut(s)	34, 143
PscI	ACATGT	1 cut(s)	391
PsiI	TTATAA	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	102, 232
RsaNI	GTAC	2 cut(s)	101, 231
SaqAI	TTAA	2 cut(s)	156, 309
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	163, 313
ScaI	AGTACT	2 cut(s)	102, 232
SchI	GAGTC	2 cut(s)	34, 143
SetI	ASST	4 cut(s)	13, 115, 139, 187
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	3 cut(s)	31, 157, 203
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	2 cut(s)	144, 174
TasI	AATT	3 cut(s)	31, 157, 203
TatI	WGTACW	2 cut(s)	100, 230
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	156, 309
Tru9I	TTAA	2 cut(s)	156, 309
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	146, 342
Tsp45I	GTSAC	2 cut(s)	146, 342
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	296
XceI	RCATGY	2 cut(s)	289, 395
XspI	CTAG	2 cut(s)	144, 174
ZrmI	AGTACT	2 cut(s)	102, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.