Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

61839661 .. 61843736

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG445400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGCAGCGGAAGGTGTATTTTGAGATCACATATGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAACTGCGAATGAATTTAGAGGGCCATATGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGCAGGACTCTTATATCTAATGCAGTGAGAAAAAAACACTATTATAAGGAAGCCATTAGAGTTGAAGTACTACCATCAGGTCAAGAAAGTGATGGGAACAAACCTTCGTCTAGTGACTCTTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTCGGTTATTGACAGCATGCCATCACTTGGATTTCAAGTTAACGATCTTATATCTGGAACTAATGTGGTTGTGTCACAACCATTGGCTACTCAGAAAAACATCGTTTCTGCTCCCCAGTTACATGTGCAATCAGTTGCAACTGATGGAGTACAAGGACAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCAAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACAATGTTATTCCAATTGAGGATCCTTTGATAACCACTAGAGCAGAACCAAATAGTCCAGATGAAACAGATGGGATTGCCCCAGATATTCATGATGTGCAATCACAGAAGTCTGCGATTGCAAATGCTGTTAATGATGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAATGAATTCAGCTGAATCAATGGGGATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTATGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACAACTGGAGCGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACGACAGAAATTCTTAATGTTCTATCACAGAAGAGTATGACTAATTGTGAATTGAATGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCCTGAATCAGGAGTTCAAGTTCCCACTAATTATCAGGACAGTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACAGGTAAAGAAAAAAAATCTTTGCCTCTGGATTCAGCATTGGATAAAAGTATTTCGGAAGTGGATGAATTGACGGAACCTGGAGATGATGTAGTTGTACTTGCAAATCAGGTTCCTGTTCTGGATTCTAGTGATGAGATGACAGCAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGGATGAGCAAGAACATGGGAAAGCTGATGTTGAATTGAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTGACATTTCTTCCTCTCAAGCGATTGCTGCATGCTACACCTTTTAAGAAGGCTTGGAAAAGTAAAAGGAGACATAAGATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

564

Amino Acids

61.41

Weight (kDa)

5.05

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	2 - 79	1.1e-20	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	74, 285
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccBSI	CCGCTC	2 cut(s)	664, 1031
AccIII	TCCGGA	1 cut(s)	1045
AciI	CCGC	4 cut(s)	7, 221, 664, 1031
AclWI	GGATC	4 cut(s)	365, 378, 746, 759
AcsI	RAATTY	4 cut(s)	152, 913, 945, 1074
AcuI	CTGAAG	1 cut(s)	986
AfaI	GTAC	4 cut(s)	309, 439, 627, 1410
AfiI	CCNNNNNNNGG	2 cut(s)	503, 1196
AflIII	ACRYGT	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	1390
AloI	GAACNNNNNNTCC	2 cut(s)	1191, 1223
AluBI	AGCT	6 cut(s)	215, 725, 920, 1013, 1529, 1545
AluI	AGCT	6 cut(s)	215, 725, 920, 1013, 1529, 1545
Alw26I	GTCTC	3 cut(s)	203, 1481, 1672
AlwI	GGATC	4 cut(s)	365, 378, 746, 759
AlwNI	CAGNNNCTG	1 cut(s)	1460
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	1045
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	4, 134, 1636
ApoI	RAATTY	4 cut(s)	152, 913, 945, 1074
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspS9I	GGNCC	2 cut(s)	161, 1241
AsuC2I	CCSGG	1 cut(s)	1239
AsuHPI	GGTGA	3 cut(s)	398, 404, 1621
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	1241
BamHI	GGATCC	2 cut(s)	370, 751
BbvI	GCAGC	3 cut(s)	16, 121, 1623
BciT130I	CCWGG	1 cut(s)	1392
BcnI	CCSGG	1 cut(s)	1239
BcoDI	GTCTC	3 cut(s)	203, 1481, 1672
BfaI	CTAG	8 cut(s)	60, 129, 351, 381, 708, 768, 1160, 1440
BisI	GCNGC	5 cut(s)	5, 135, 222, 665, 1637
BlsI	GCNGC	5 cut(s)	6, 136, 223, 666, 1638
BmcAI	AGTACT	2 cut(s)	309, 439
Bme1390I	CCNGG	2 cut(s)	1239, 1392
Bme18I	GGWCC	1 cut(s)	1241
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	161, 1241
BmiI	GGNNCC	4 cut(s)	372, 753, 1389, 1425
BmrFI	CCNGG	2 cut(s)	1239, 1392
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	1 cut(s)	985
BmuI	ACTGGG	1 cut(s)	586
BpmI	CTGGAG	4 cut(s)	418, 918, 1047, 1413
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	1610
BpuMI	CCSGG	1 cut(s)	1239
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	204, 1554, 1581
BsaWI	WCCGGW	1 cut(s)	1045
BsaXI	ACNNNNNCTCC	4 cut(s)	1191, 1221, 1386, 1416
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 1196
Bse1I	ACTGG	4 cut(s)	435, 592, 901, 1030
Bse3DI	GCAATG	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	1045
BseBI	CCWGG	1 cut(s)	1392
BseDI	CCNNGG	3 cut(s)	204, 1554, 1581
BseGI	GGATG	4 cut(s)	1054, 1306, 1381, 1513
BseLI	CCNNNNNNNGG	2 cut(s)	503, 1196
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	581, 704, 1148
BseNI	ACTGG	4 cut(s)	435, 592, 901, 1030
BseXI	GCAGC	3 cut(s)	16, 121, 1623
BshFI	GGCC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	1046, 1239
BslI	CCNNNNNNNGG	2 cut(s)	503, 1196
BsmAI	GTCTC	3 cut(s)	203, 1481, 1672
BsnI	GGCC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	1045
Bsp143I	GATC	4 cut(s)	24, 370, 520, 751
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	4 cut(s)	7, 221, 664, 1031
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	580, 703, 1147
BspEI	TCCGGA	1 cut(s)	1045
BspHI	TCATGA	3 cut(s)	820, 949, 1483
BspLI	GGNNCC	4 cut(s)	372, 753, 1389, 1425
BspPI	GGATC	4 cut(s)	365, 378, 746, 759
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	2 cut(s)	664, 1031
BsrDI	GCAATG	1 cut(s)	188
BsrI	ACTGG	4 cut(s)	435, 592, 901, 1030
BssECI	CCNNGG	3 cut(s)	204, 1554, 1581
BssMI	GATC	4 cut(s)	24, 370, 520, 751
BssT1I	CCWWGG	3 cut(s)	204, 1554, 1581
Bst2UI	CCWGG	1 cut(s)	1392
Bst4CI	ACNGT	1 cut(s)	1229
Bst6I	CTCTTC	2 cut(s)	1091, 1248
BstC8I	GCNNGC	2 cut(s)	494, 1641
BstDEI	CTNAG	5 cut(s)	84, 216, 567, 690, 1134
BstDSI	CCRYGG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	1194
BstF5I	GGATG	4 cut(s)	1054, 1306, 1381, 1513
BstKTI	GATC	4 cut(s)	27, 373, 523, 754
BstMAI	GTCTC	3 cut(s)	203, 1481, 1672
BstMBI	GATC	4 cut(s)	24, 370, 520, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 221, 1636
BstNI	CCWGG	1 cut(s)	1392
BstNSI	RCATGY	3 cut(s)	496, 602, 1643
BstSCI	CCNGG	2 cut(s)	1237, 1390
BstV1I	GCAGC	3 cut(s)	16, 121, 1623
BstX2I	RGATCY	2 cut(s)	370, 751
BstYI	RGATCY	2 cut(s)	370, 751
BsuRI	GGCC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	1054, 1306, 1381, 1513
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	4 cut(s)	270, 894, 962, 1234
Cac8I	GCNNGC	2 cut(s)	494, 1641
CaiI	CAGNNNCTG	1 cut(s)	1460
CciI	TCATGA	3 cut(s)	820, 949, 1483
Cfr13I	GGNCC	2 cut(s)	161, 1241
Csp6I	GTAC	4 cut(s)	308, 438, 626, 1409
CviAII	CATG	9 cut(s)	205, 493, 599, 821, 950, 1154, 1484, 1520, 1640
CviQI	GTAC	4 cut(s)	308, 438, 626, 1409
DdeI	CTNAG	5 cut(s)	84, 216, 567, 690, 1134
DpnI	GATC	4 cut(s)	26, 372, 522, 753
DpnII	GATC	4 cut(s)	24, 370, 520, 751
DraI	TTTAAA	1 cut(s)	991
Eam1104I	CTCTTC	2 cut(s)	1091, 1248
EarI	CTCTTC	2 cut(s)	1091, 1248
Eco130I	CCWWGG	3 cut(s)	204, 1554, 1581
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	1241
Eco57I	CTGAAG	1 cut(s)	986
Eco88I	CYCGRG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	1194
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	1390
EcoT14I	CCWWGG	3 cut(s)	204, 1554, 1581
ErhI	CCWWGG	3 cut(s)	204, 1554, 1581
FaeI	CATG	9 cut(s)	208, 496, 602, 824, 953, 1157, 1487, 1523, 1643
FatI	CATG	9 cut(s)	204, 492, 598, 820, 949, 1153, 1483, 1519, 1639
FauNDI	CATATG	2 cut(s)	31, 166
Fnu4HI	GCNGC	5 cut(s)	5, 135, 222, 665, 1637
FokI	GGATG	4 cut(s)	1061, 1313, 1388, 1520
Fsp4HI	GCNGC	5 cut(s)	5, 135, 222, 665, 1637
FspBI	CTAG	8 cut(s)	60, 129, 351, 381, 708, 768, 1160, 1440
GluI	GCNGC	5 cut(s)	5, 135, 222, 665, 1637
GsuI	CTGGAG	4 cut(s)	418, 918, 1047, 1413
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	2 cut(s)	1046, 1239
Hin1II	CATG	9 cut(s)	208, 496, 602, 824, 953, 1157, 1487, 1523, 1643
HincII	GTYRAC	2 cut(s)	517, 730
HindII	GTYRAC	2 cut(s)	517, 730
HinfI	GANTC	9 cut(s)	103, 247, 356, 923, 1042, 1193, 1343, 1436, 1568
HpaI	GTTAAC	2 cut(s)	517, 730
HpaII	CCGG	2 cut(s)	1046, 1239
HphI	GGTGA	3 cut(s)	398, 404, 1621
Hpy166II	GTNNAC	2 cut(s)	517, 730
Hpy188I	TCNGA	4 cut(s)	570, 693, 1369, 1567
Hpy8I	GTNNAC	2 cut(s)	517, 730
HpyAV	CCTTC	6 cut(s)	4, 57, 105, 354, 383, 1651
HpyCH4III	ACNGT	1 cut(s)	1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 221, 1636
HpyF3I	CTNAG	5 cut(s)	84, 216, 567, 690, 1134
Hsp92II	CATG	9 cut(s)	208, 496, 602, 824, 953, 1157, 1487, 1523, 1643
Kpn2I	TCCGGA	1 cut(s)	1045
KspAI	GTTAAC	2 cut(s)	517, 730
Kzo9I	GATC	4 cut(s)	24, 370, 520, 751
LmnI	GCTCC	5 cut(s)	592, 661, 899, 1018, 1028
Lsp1109I	GCAGC	3 cut(s)	16, 121, 1623
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	8 cut(s)	60, 129, 351, 381, 708, 768, 1160, 1440
MaeIII	GTNAC	6 cut(s)	353, 428, 549, 594, 1063, 1609
MalI	GATC	4 cut(s)	26, 372, 522, 753
MbiI	CCGCTC	2 cut(s)	664, 1031
MboI	GATC	4 cut(s)	24, 370, 520, 751
MboII	GAAGA	4 cut(s)	1108, 1265, 1606, 1610
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	2 cut(s)	370, 751
MlyI	GAGTC	3 cut(s)	97, 241, 350
MmeI	TCCRAC	1 cut(s)	639
MroI	TCCGGA	1 cut(s)	1045
MspA1I	CMGCKG	2 cut(s)	7, 920
MspI	CCGG	2 cut(s)	1046, 1239
MspR9I	CCNGG	2 cut(s)	1239, 1392
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	3 cut(s)	143, 221, 1636
NciI	CCSGG	1 cut(s)	1239
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	2 cut(s)	31, 166
NdeII	GATC	4 cut(s)	24, 370, 520, 751
NlaIII	CATG	9 cut(s)	208, 496, 602, 824, 953, 1157, 1487, 1523, 1643
NlaIV	GGNNCC	4 cut(s)	372, 753, 1389, 1425
NmuCI	GTSAC	3 cut(s)	353, 549, 1609
NspI	RCATGY	3 cut(s)	496, 602, 1643
PaeI	GCATGC	2 cut(s)	496, 1643
PaeR7I	CTCGAG	1 cut(s)	105
PagI	TCATGA	3 cut(s)	820, 949, 1483
PciI	ACATGT	1 cut(s)	598
PfeI	GAWTC	6 cut(s)	923, 1042, 1193, 1343, 1436, 1568
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	5 cut(s)	6, 136, 223, 666, 1638
PleI	GAGTC	3 cut(s)	97, 241, 350
PpsI	GAGTC	3 cut(s)	97, 241, 350
PscI	ACATGT	1 cut(s)	598
PsiI	TTATAA	2 cut(s)	74, 285
Psp6I	CCWGG	1 cut(s)	1390
PspGI	CCWGG	1 cut(s)	1390
PspN4I	GGNNCC	4 cut(s)	372, 753, 1389, 1425
PspPI	GGNCC	2 cut(s)	161, 1241
PspXI	VCTCGAGB	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	1460
PsuI	RGATCY	2 cut(s)	370, 751
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	4 cut(s)	309, 439, 627, 1410
RsaNI	GTAC	4 cut(s)	308, 438, 626, 1409
SatI	GCNGC	5 cut(s)	5, 135, 222, 665, 1637
Sau3AI	GATC	4 cut(s)	24, 370, 520, 751
Sau96I	GGNCC	2 cut(s)	161, 1241
ScaI	AGTACT	2 cut(s)	309, 439
SchI	GAGTC	3 cut(s)	97, 241, 350
ScrFI	CCNGG	2 cut(s)	1239, 1392
SfaNI	GCATC	1 cut(s)	985
Sfr274I	CTCGAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	1241
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	105, 1625
SmoI	CTYRAG	2 cut(s)	105, 1625
SphI	GCATGC	2 cut(s)	496, 1643
SsiI	CCGC	4 cut(s)	7, 221, 664, 1031
SspMI	CTAG	8 cut(s)	60, 129, 351, 381, 708, 768, 1160, 1440
StyD4I	CCNGG	2 cut(s)	1237, 1390
StyI	CCWWGG	3 cut(s)	204, 1554, 1581
TaaI	ACNGT	1 cut(s)	1229
TaqI	TCGA	1 cut(s)	106
TaqII	GACCGA	1 cut(s)	185
TatI	WGTACW	4 cut(s)	307, 437, 625, 1408
TauI	GCSGC	2 cut(s)	224, 667
TfiI	GAWTC	6 cut(s)	923, 1042, 1193, 1343, 1436, 1568
TscAI	CASTG	4 cut(s)	270, 901, 969, 1234
TseFI	GTSAC	3 cut(s)	353, 549, 1609
TseI	GCWGC	3 cut(s)	4, 134, 1636
Tsp45I	GTSAC	3 cut(s)	353, 549, 1609
TspDTI	ATGAA	9 cut(s)	165, 693, 807, 809, 926, 938, 1266, 1317, 1392
TspGWI	ACGGA	1 cut(s)	1400
TspRI	CASTG	4 cut(s)	270, 901, 969, 1234
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	1241
XagI	CCTNNNNNAGG	1 cut(s)	1194
XapI	RAATTY	4 cut(s)	152, 913, 945, 1074
XceI	RCATGY	3 cut(s)	496, 602, 1643
XhoI	CTCGAG	1 cut(s)	105
XspI	CTAG	8 cut(s)	60, 129, 351, 381, 708, 768, 1160, 1440
ZrmI	AGTACT	2 cut(s)	309, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.