Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Forward (+)

64353253 .. 64356550

Gene Structure 3298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGGGCTTCTTCGACCTGAGCGTGCCCTACAACGACCTCCCGCCGCCGGACCGCTCAACCCGTGCGAAGCTCGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTCGCCTACAACCATACGATCAAGGGCGTCATGTCCGATCGCGACCGTTGCTCCATCCCCCTCCTCACTCTCCCTTCTCTCCTCAAACACTCTCCTCACCTCACCTCCTCCGTTGGCTTCCACCGCGACCTCCTCGGCGTCCCACGCGCCATCCCATTCCGCCAGTACACGCGCCTCACCGTCTGCGCCGAAACCCCTGCCCAGGCTCAGGCCCTCAATTCCGGCAACCCCATTTTGAAGACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAGTCCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATTGCGATTGATTTTTCGGATAAGTTACCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCCATTGAGCGGAAGGTGTATTTTGAGATCACATATGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAACTGCGAATGAATTTAGAGGGCCATATGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGGACTCTTATATCTAATGGAGTGAGAAAAAAACACTATTATAAGGAAGCCATTAGAGTTGAAGTACTACCATCAGGTCAAGAAAGTGATGGGAACAAACCTTCGTCTGGTGACTCTTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTCGGTTATTGACAGCATGCCATCACTTGGATTTCAAGTTAACGATCTTATAGCTGGAACTAATGTGGTTGTGTCACAACCATTGGCTACTCAGAAAAACATCGTTTCTGCTCCCCAGTTAAATGTGCAATCAGTTGCAACTGATGGAGTACAAGAACAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCGAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACAATGTTATTCCAATTGAAGATCCTTCGATAACCACAAGAGCAGAACCAAATAGTCCAGATGAAACAGATGGGATTGCTACAGATATTCATGATGTGCAATCACAGAAGTCTGCGATTGCAAATGCTGTTAATGATGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAACGAATTCAGCTGAATCACTGGGAATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTGTGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACCACTGGAGCGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACTACAGAAATTCTTAATGTTCTATCACAGAAGAGTGTGACTAATTGCGAATTGAATGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCCTGATTCTGAAGTTCAGGTTCCCACTAATTATCAGGACACTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACAGGTAAAGAAAAAAAATCTTTGCCTCTGGATTCAGCATTGGATAAAAGTATTTTGGAAGTGGATGAATTGACGGAACCTGGAGATGATGTAGTCGTACTTGCAAATCAGGTTCCTGTTCTGGATTCTAGTGATGAGATGACAGCAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGCATGAGCAAGAACATGGGAAAGCTGATGTTGAATTGAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTGACATTTCTTCCGCTCAAGCGATTGCTGCATGCTACACCTTTTAAGAAGGCTCGGAGAAGTAAAAGGAGACATAAGATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

726

Amino Acids

79.15

Weight (kDa)

5.33

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	5 - 241	1.6e-52	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 768
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccBSI	CCGCTC	5 cut(s)	54, 493, 1147, 1514, 2107
AccII	CGCG	4 cut(s)	147, 231, 252, 277
AccIII	TCCGGA	1 cut(s)	1528
AclWI	GGATC	3 cut(s)	848, 861, 1229
AcsI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
AcuI	CTGAAG	2 cut(s)	1469, 1701
AcyI	GRCGYC	3 cut(s)	105, 132, 243
AfaI	GTAC	5 cut(s)	272, 792, 922, 1110, 1893
AfiI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 833, 986
AjnI	CCWGG	2 cut(s)	306, 1873
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	689, 1964, 2155
AlwI	GGATC	3 cut(s)	848, 861, 1229
AlwNI	CAGNNNCTG	2 cut(s)	472, 1943
Ama87I	CYCGRG	2 cut(s)	86, 591
Aor13HI	TCCGGA	1 cut(s)	1528
AoxI	GGCC	4 cut(s)	81, 315, 396, 647
ApeKI	GCWGC	4 cut(s)	466, 482, 620, 2119
ApoI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 656, 688
AspLEI	GCGC	3 cut(s)	254, 279, 293
AspS9I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
AsuC2I	CCSGG	1 cut(s)	1722
AsuHPI	GGTGA	7 cut(s)	194, 199, 274, 848, 881, 887, 2104
AvaI	CYCGRG	2 cut(s)	86, 591
AvaII	GGWCC	2 cut(s)	49, 1724
BaeGI	GKGCMC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	853
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	469, 478, 607, 2106
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	308, 1875
BcnI	CCSGG	1 cut(s)	1722
BcoDI	GTCTC	3 cut(s)	689, 1964, 2155
BfaI	CTAG	6 cut(s)	546, 615, 864, 1191, 1643, 1923
BfmI	CTRYAG	2 cut(s)	1293, 1551
BisI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2120
BlsI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1149, 2121
BmcAI	AGTACT	2 cut(s)	792, 922
Bme1390I	CCNGG	3 cut(s)	308, 1722, 1875
Bme18I	GGWCC	2 cut(s)	49, 1724
BmeT110I	CYCGRG	2 cut(s)	86, 591
BmgT120I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
BmiI	GGNNCC	4 cut(s)	855, 1692, 1872, 1908
BmrFI	CCNGG	3 cut(s)	308, 1722, 1875
BmrI	ACTGGG	2 cut(s)	1069, 1421
BmsI	GCATC	1 cut(s)	1468
BmuI	ACTGGG	2 cut(s)	1069, 1421
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	4 cut(s)	901, 1401, 1530, 1896
Bpu10I	CCTNAGC	3 cut(s)	17, 312, 702
BpuEI	CTTGAG	1 cut(s)	2093
BpuMI	CCSGG	1 cut(s)	1722
BsaHI	GRCGYC	3 cut(s)	105, 132, 243
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2037, 2064
BsaWI	WCCGGW	1 cut(s)	1528
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 194, 224, 1869, 1899
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 833, 986
Bse1I	ACTGG	7 cut(s)	268, 379, 918, 1075, 1384, 1416, 1513
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	1528
BseBI	CCWGG	2 cut(s)	308, 1875
BseDI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2037, 2064
BseGI	GGATG	5 cut(s)	159, 255, 1537, 1789, 1864
BseLI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 833, 986
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	5 cut(s)	8, 326, 1064, 1187, 1631
BseNI	ACTGG	7 cut(s)	268, 379, 918, 1075, 1384, 1416, 1513
BseRI	GAGGAG	5 cut(s)	158, 176, 189, 202, 227
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	469, 478, 607, 2106
Bsh1236I	CGCG	4 cut(s)	147, 231, 252, 277
Bsh1285I	CGRYCG	2 cut(s)	145, 151
BshFI	GGCC	4 cut(s)	83, 317, 398, 649
BsiEI	CGRYCG	2 cut(s)	145, 151
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	86, 591
BsiSI	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 833, 986
BsmAI	GTCTC	3 cut(s)	689, 1964, 2155
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	83, 317, 398, 649
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	2 cut(s)	86, 591
Bsp1286I	GDGCHC	2 cut(s)	27, 93
Bsp13I	TCCGGA	1 cut(s)	1528
Bsp143I	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
Bsp19I	CCATGG	1 cut(s)	690
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	83, 317, 398, 649
BspCNI	CTCAG	5 cut(s)	9, 325, 1063, 1186, 1630
BspEI	TCCGGA	1 cut(s)	1528
BspFNI	CGCG	4 cut(s)	147, 231, 252, 277
BspHI	TCATGA	3 cut(s)	1303, 1432, 1966
BspLI	GGNNCC	4 cut(s)	855, 1692, 1872, 1908
BspPI	GGATC	3 cut(s)	848, 861, 1229
BspTNI	GGTCTC	1 cut(s)	689
BsrBI	CCGCTC	5 cut(s)	54, 493, 1147, 1514, 2107
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	7 cut(s)	268, 379, 918, 1075, 1384, 1416, 1513
BssECI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2037, 2064
BssMI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
BssNI	GRCGYC	3 cut(s)	105, 132, 243
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	4 cut(s)	78, 690, 2037, 2064
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	308, 1875
Bst4CI	ACNGT	2 cut(s)	152, 286
Bst6I	CTCTTC	2 cut(s)	1574, 1731
BstACI	GRCGYC	3 cut(s)	105, 132, 243
BstC8I	GCNNGC	3 cut(s)	23, 977, 2124
BstDEI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	5 cut(s)	159, 255, 1537, 1789, 1864
BstFNI	CGCG	4 cut(s)	147, 231, 252, 277
BstHHI	GCGC	3 cut(s)	254, 279, 293
BstKTI	GATC	7 cut(s)	126, 145, 394, 513, 856, 1006, 1237
BstMAI	GTCTC	3 cut(s)	689, 1964, 2155
BstMBI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
BstMCI	CGRYCG	2 cut(s)	145, 151
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 153, 228, 249, 629, 707, 2119
BstNI	CCWGG	2 cut(s)	308, 1875
BstNSI	RCATGY	2 cut(s)	979, 2126
BstSCI	CCNGG	3 cut(s)	306, 1720, 1873
BstSFI	CTRYAG	2 cut(s)	1293, 1551
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	4 cut(s)	147, 231, 252, 277
BstV1I	GCAGC	4 cut(s)	469, 478, 607, 2106
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	853, 1234
BstYI	RGATCY	2 cut(s)	853, 1234
BsuRI	GGCC	4 cut(s)	83, 317, 398, 649
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	159, 255, 1537, 1789, 1864
BtsIMutI	CAGTG	5 cut(s)	1377, 1409, 1445, 1506, 1710
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	23, 977, 2124
CaiI	CAGNNNCTG	2 cut(s)	472, 1943
CciI	TCATGA	3 cut(s)	1303, 1432, 1966
CfoI	GCGC	3 cut(s)	254, 279, 293
Cfr13I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	3 cut(s)	94, 121, 232
Csp6I	GTAC	5 cut(s)	271, 791, 921, 1109, 1892
CspI	CGGWCCG	1 cut(s)	49
CviQI	GTAC	5 cut(s)	271, 791, 921, 1109, 1892
DdeI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
DpnI	GATC	7 cut(s)	125, 144, 393, 512, 855, 1005, 1236
DpnII	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
DraI	TTTAAA	1 cut(s)	1474
Eam1104I	CTCTTC	2 cut(s)	1574, 1731
EarI	CTCTTC	2 cut(s)	1574, 1731
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	78, 690, 2037, 2064
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	49, 1724
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	1469, 1701
Eco88I	CYCGRG	2 cut(s)	86, 591
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	82, 316
EcoRI	GAATTC	1 cut(s)	1396
EcoRII	CCWGG	2 cut(s)	306, 1873
EcoT14I	CCWWGG	4 cut(s)	78, 690, 2037, 2064
EcoT22I	ATGCAT	1 cut(s)	1992
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	78, 690, 2037, 2064
FaqI	GGGAC	1 cut(s)	230
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	2 cut(s)	517, 652
Fnu4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2120
FokI	GGATG	5 cut(s)	146, 242, 1544, 1796, 1871
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2120
FspBI	CTAG	6 cut(s)	546, 615, 864, 1191, 1643, 1923
GlaI	GCGC	3 cut(s)	253, 278, 292
GluI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2120
GsuI	CTGGAG	4 cut(s)	901, 1401, 1530, 1896
HaeIII	GGCC	4 cut(s)	83, 317, 398, 649
HapII	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
HgaI	GACGC	3 cut(s)	94, 121, 232
HhaI	GCGC	3 cut(s)	254, 279, 293
Hin1I	GRCGYC	3 cut(s)	105, 132, 243
Hin6I	GCGC	3 cut(s)	252, 277, 291
HinP1I	GCGC	3 cut(s)	252, 277, 291
HincII	GTYRAC	2 cut(s)	1000, 1213
HindII	GTYRAC	2 cut(s)	1000, 1213
HinfI	GANTC	9 cut(s)	589, 730, 839, 1406, 1525, 1676, 1826, 1919, 2051
HpaI	GTTAAC	2 cut(s)	1000, 1213
HpaII	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
HphI	GGTGA	7 cut(s)	194, 199, 274, 848, 881, 887, 2104
Hpy166II	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy188I	TCNGA	7 cut(s)	142, 442, 1053, 1176, 1681, 2050, 2148
Hpy8I	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	8 cut(s)	189, 490, 543, 591, 837, 866, 1248, 2134
HpyCH4III	ACNGT	2 cut(s)	152, 286
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 153, 228, 249, 629, 707, 2119
HpyF3I	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
Hsp92I	GRCGYC	3 cut(s)	105, 132, 243
HspAI	GCGC	3 cut(s)	252, 277, 291
Kpn2I	TCCGGA	1 cut(s)	1528
KspAI	GTTAAC	2 cut(s)	1000, 1213
Kzo9I	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
LmnI	GCTCC	6 cut(s)	161, 1075, 1144, 1382, 1501, 1511
Lsp1109I	GCAGC	4 cut(s)	469, 478, 607, 2106
LweI	GCATC	1 cut(s)	1468
MaeI	CTAG	6 cut(s)	546, 615, 864, 1191, 1643, 1923
MaeIII	GTNAC	9 cut(s)	73, 447, 836, 911, 1032, 1456, 1546, 1585, 2092
MalI	GATC	7 cut(s)	125, 144, 393, 512, 855, 1005, 1236
MbiI	CCGCTC	5 cut(s)	54, 493, 1147, 1514, 2107
MboI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
MboII	GAAGA	6 cut(s)	355, 1244, 1591, 1748, 2089, 2093
MfeI	CAATTG	1 cut(s)	1227
MflI	RGATCY	2 cut(s)	853, 1234
MhlI	GDGCHC	2 cut(s)	27, 93
MlyI	GAGTC	3 cut(s)	583, 724, 833
MmeI	TCCRAC	1 cut(s)	1122
Mph1103I	ATGCAT	1 cut(s)	1992
MroI	TCCGGA	1 cut(s)	1528
MspA1I	CMGCKG	1 cut(s)	1403
MspI	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
MspR9I	CCNGG	3 cut(s)	308, 1722, 1875
MunI	CAATTG	1 cut(s)	1227
MvaI	CCWGG	2 cut(s)	308, 1875
MvnI	CGCG	4 cut(s)	147, 231, 252, 277
MwoI	GCNNNNNNNGC	7 cut(s)	102, 153, 228, 249, 629, 707, 2119
NciI	CCSGG	1 cut(s)	1722
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	2 cut(s)	517, 652
NdeII	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
NlaIV	GGNNCC	4 cut(s)	855, 1692, 1872, 1908
NmeAIII	GCCGAG	2 cut(s)	72, 219
NmuCI	GTSAC	6 cut(s)	73, 836, 1032, 1456, 1585, 2092
NruI	TCGCGA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	1992
NspI	RCATGY	2 cut(s)	979, 2126
PaeI	GCATGC	2 cut(s)	979, 2126
PaeR7I	CTCGAG	2 cut(s)	86, 591
PagI	TCATGA	3 cut(s)	1303, 1432, 1966
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	6 cut(s)	1406, 1525, 1676, 1826, 1919, 2051
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1149, 2121
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	583, 724, 833
PpsI	GAGTC	3 cut(s)	583, 724, 833
PsiI	TTATAA	2 cut(s)	560, 768
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	306, 1873
PspGI	CCWGG	2 cut(s)	306, 1873
PspN4I	GGNNCC	4 cut(s)	855, 1692, 1872, 1908
PspPI	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
PspXI	VCTCGAGB	2 cut(s)	86, 591
PstNI	CAGNNNCTG	2 cut(s)	472, 1943
PsuI	RGATCY	2 cut(s)	853, 1234
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	1403
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	5 cut(s)	272, 792, 922, 1110, 1893
RsaNI	GTAC	5 cut(s)	271, 791, 921, 1109, 1892
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2120
Sau3AI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
Sau96I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
ScaI	AGTACT	2 cut(s)	792, 922
SchI	GAGTC	3 cut(s)	583, 724, 833
ScrFI	CCNGG	3 cut(s)	308, 1722, 1875
SduI	GDGCHC	2 cut(s)	27, 93
SfaNI	GCATC	1 cut(s)	1468
SfcI	CTRYAG	2 cut(s)	1293, 1551
Sfr274I	CTCGAG	2 cut(s)	86, 591
SinI	GGWCC	2 cut(s)	49, 1724
SlaI	CTCGAG	2 cut(s)	86, 591
SmlI	CTYRAG	3 cut(s)	86, 591, 2108
SmoI	CTYRAG	3 cut(s)	86, 591, 2108
SphI	GCATGC	2 cut(s)	979, 2126
SseBI	AGGCCT	1 cut(s)	398
SspMI	CTAG	6 cut(s)	546, 615, 864, 1191, 1643, 1923
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	306, 1720, 1873
StyI	CCWWGG	4 cut(s)	78, 690, 2037, 2064
TaaI	ACNGT	2 cut(s)	152, 286
TaqI	TCGA	6 cut(s)	12, 87, 390, 457, 592, 1241
TaqII	GACCGA	1 cut(s)	671
TatI	WGTACW	4 cut(s)	270, 790, 920, 1108
TauI	GCSGC	3 cut(s)	46, 710, 1150
TfiI	GAWTC	6 cut(s)	1406, 1525, 1676, 1826, 1919, 2051
TscAI	CASTG	5 cut(s)	1384, 1416, 1452, 1513, 1717
TseFI	GTSAC	6 cut(s)	73, 836, 1032, 1456, 1585, 2092
TseI	GCWGC	4 cut(s)	466, 482, 620, 2119
Tsp45I	GTSAC	6 cut(s)	73, 836, 1032, 1456, 1585, 2092
TspDTI	ATGAA	9 cut(s)	389, 651, 1176, 1290, 1292, 1421, 1749, 1800, 1875
TspGWI	ACGGA	2 cut(s)	205, 1883
TspRI	CASTG	5 cut(s)	1384, 1416, 1452, 1513, 1717
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	2 cut(s)	49, 1724
XapI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
XceI	RCATGY	2 cut(s)	979, 2126
XhoI	CTCGAG	2 cut(s)	86, 591
XspI	CTAG	6 cut(s)	546, 615, 864, 1191, 1643, 1923
ZrmI	AGTACT	2 cut(s)	792, 922
Zsp2I	ATGCAT	1 cut(s)	1992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.