Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014282.1

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Forward (+)

35299 .. 37768

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014282.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgggttttaccagactcttcctcttcttcctccttttggtcttaaacccatctcaatcttatgctgccaagaatgtgagtgtgactctctactacgagactctgtgtccttattgtgccgatttcatagtgaaccatctggccaagatcttccagaatgggctcatctccatcgtcaatctcagaatggtcccttggggcaacgcttggctcaattccgacggctccttcgcctgccagttcgctttcgatcaggcctgtgagaaattggaggtagatataattgcgattgatttttcggagaagttaccatttcgattgaagcagcctctggttaaagctgccattgagcggaaggtgtattttgagatcacatatgcagggcttattgccgatttattggtagattggactcgaggaaggaatataattatctctagtgctgccccaactgtgaatgaatttagagggccatttgatgttgcaaacttaatgtcattgctcggtctctccatggaacgagctaaggcggctatttcaagaaattgtaggactcttatatctaatgcagtgaggaaaaaacactattataagaaatccattagagttgaagtactaccatcaggtcaagaaagtgatgggaacaaaccttcgtctagtgactcttttaattgggatcccatctctagtggtgaaggtgatttgcttttagatgaattggcaaaggctttcagtaactccagtactaaagcaaccaaaatggtcaaagccattgattttgctttgtttattgacagcatgccatcacttggatttcaagttaacgatcttatagctggaactaatgtggttgtgtcacaaccattggctactcagaaaatcatcgtttctgctccccagttaaatgtgcaatcagttgcaactgatggagtacaagaacaatctgttttatgtgatactatgttggagcggcaaagaaccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

328

Amino Acids

36.36

Weight (kDa)

7.54

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccBSI	CCGCTC	2 cut(s)	352, 970
AciI	CCGC	3 cut(s)	352, 530, 970
AclWI	GGATC	2 cut(s)	671, 684
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	461
AfaI	GTAC	3 cut(s)	615, 745, 933
AfiI	CCNNNNNNNGG	3 cut(s)	37, 351, 809
AgsI	TTSAA	4 cut(s)	322, 540, 611, 818
AhdI	GACNNNNNGTC	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	341, 524, 836
AluI	AGCT	3 cut(s)	341, 524, 836
Alw26I	GTCTC	2 cut(s)	92, 512
AlwI	GGATC	2 cut(s)	671, 684
AlwNI	CAGNNNCTG	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	3 cut(s)	141, 255, 470
ApeKI	GCWGC	4 cut(s)	65, 325, 341, 443
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	4 cut(s)	212, 244, 479, 511
AspS9I	GGNCC	2 cut(s)	190, 470
AsuHPI	GGTGA	2 cut(s)	704, 710
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	52, 328, 337, 430
BccI	CCATC	8 cut(s)	58, 144, 179, 628, 632, 689, 811, 920
BceAI	ACGGC	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	92, 512
BfaI	CTAG	3 cut(s)	438, 657, 687
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	6 cut(s)	66, 326, 342, 444, 531, 971
BlsI	GCNGC	6 cut(s)	67, 327, 343, 445, 532, 972
BmcAI	AGTACT	2 cut(s)	615, 745
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	190, 470
BmiI	GGNNCC	3 cut(s)	192, 226, 678
BmrI	ACTGGG	1 cut(s)	892
BmuI	ACTGGG	1 cut(s)	892
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	1 cut(s)	724
Bpu10I	CCTNAGC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	194, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 351, 809
Bse1I	ACTGG	3 cut(s)	238, 741, 898
Bse3DI	GCAATG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	194, 513
BseLI	CCNNNNNNNGG	3 cut(s)	37, 351, 809
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	196, 887
BseNI	ACTGG	3 cut(s)	238, 741, 898
BseXI	GCAGC	4 cut(s)	52, 328, 337, 430
BshFI	GGCC	3 cut(s)	143, 257, 472
BsiHKCI	CYCGRG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	37, 351, 809
BsmAI	GTCTC	2 cut(s)	92, 512
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	143, 257, 472
Bso31I	GGTCTC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	147, 250, 369, 676, 826
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	3 cut(s)	352, 530, 970
BspANI	GGCC	3 cut(s)	143, 257, 472
BspCNI	CTCAG	2 cut(s)	195, 886
BspLI	GGNNCC	3 cut(s)	192, 226, 678
BspPI	GGATC	2 cut(s)	671, 684
BspTNI	GGTCTC	1 cut(s)	512
BsrBI	CCGCTC	2 cut(s)	352, 970
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	3 cut(s)	238, 741, 898
BssECI	CCNNGG	2 cut(s)	194, 513
BssMI	GATC	5 cut(s)	147, 250, 369, 676, 826
BssT1I	CCWWGG	2 cut(s)	194, 513
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	2 cut(s)	235, 800
BstDEI	CTNAG	3 cut(s)	182, 525, 873
BstDSI	CCRYGG	1 cut(s)	513
BstKTI	GATC	5 cut(s)	150, 253, 372, 679, 829
BstMAI	GTCTC	2 cut(s)	92, 512
BstMBI	GATC	5 cut(s)	147, 250, 369, 676, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	802
BstV1I	GCAGC	4 cut(s)	52, 328, 337, 430
BstX2I	RGATCY	2 cut(s)	147, 676
BstYI	RGATCY	2 cut(s)	147, 676
BsuRI	GGCC	3 cut(s)	143, 257, 472
BtgI	CCRYGG	1 cut(s)	513
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	235, 800
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	190, 470
Csp6I	GTAC	3 cut(s)	614, 744, 932
CviAII	CATG	2 cut(s)	514, 799
CviQI	GTAC	3 cut(s)	614, 744, 932
DdeI	CTNAG	3 cut(s)	182, 525, 873
DpnI	GATC	5 cut(s)	149, 252, 371, 678, 828
DpnII	GATC	5 cut(s)	147, 250, 369, 676, 826
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	2 cut(s)	194, 513
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	194, 513
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	194, 513
FaeI	CATG	2 cut(s)	517, 802
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	513, 798
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	6 cut(s)	66, 326, 342, 444, 531, 971
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	6 cut(s)	66, 326, 342, 444, 531, 971
FspBI	CTAG	3 cut(s)	438, 657, 687
GluI	GCNGC	6 cut(s)	66, 326, 342, 444, 531, 971
GsuI	CTGGAG	1 cut(s)	724
HaeIII	GGCC	3 cut(s)	143, 257, 472
Hin1II	CATG	2 cut(s)	517, 802
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	6 cut(s)	15, 85, 100, 412, 553, 662
HpaI	GTTAAC	1 cut(s)	823
HphI	GGTGA	2 cut(s)	704, 710
Hpy166II	GTNNAC	2 cut(s)	133, 823
Hpy188I	TCNGA	4 cut(s)	185, 220, 301, 876
Hpy188III	TCNNGA	3 cut(s)	154, 540, 629
Hpy8I	GTNNAC	2 cut(s)	133, 823
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	5 cut(s)	238, 349, 414, 660, 689
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	380, 485, 569, 910, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	182, 525, 873
Hsp92II	CATG	2 cut(s)	517, 802
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	147, 250, 369, 676, 826
LmnI	GCTCC	3 cut(s)	230, 898, 967
Lsp1109I	GCAGC	4 cut(s)	52, 328, 337, 430
MaeI	CTAG	3 cut(s)	438, 657, 687
MaeIII	GTNAC	5 cut(s)	82, 306, 659, 734, 855
MalI	GATC	5 cut(s)	149, 252, 371, 678, 828
MbiI	CCGCTC	2 cut(s)	352, 970
MboI	GATC	5 cut(s)	147, 250, 369, 676, 826
MboII	GAAGA	4 cut(s)	10, 16, 19, 142
MflI	RGATCY	2 cut(s)	147, 676
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	8 cut(s)	214, 266, 282, 429, 461, 544, 670, 716
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	6 cut(s)	9, 79, 94, 406, 547, 656
MmeI	TCCRAC	2 cut(s)	243, 945
MnlI	CCTC	7 cut(s)	32, 41, 265, 339, 410, 461, 567
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	6 cut(s)	44, 336, 491, 669, 822, 902
Msp20I	TGGCCA	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	5 cut(s)	147, 250, 369, 676, 826
NlaIII	CATG	2 cut(s)	517, 802
NlaIV	GGNNCC	3 cut(s)	192, 226, 678
NmuCI	GTSAC	3 cut(s)	82, 659, 855
NspI	RCATGY	1 cut(s)	802
PaeI	GCATGC	1 cut(s)	802
PaeR7I	CTCGAG	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	6 cut(s)	67, 327, 343, 445, 532, 972
PleI	GAGTC	6 cut(s)	9, 79, 94, 406, 547, 656
PpsI	GAGTC	6 cut(s)	9, 79, 94, 406, 547, 656
PsiI	TTATAA	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	192, 226, 678
PspPI	GGNCC	2 cut(s)	190, 470
PspXI	VCTCGAGB	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	147, 676
RsaI	GTAC	3 cut(s)	615, 745, 933
RsaNI	GTAC	3 cut(s)	614, 744, 932
SaqAI	TTAA	6 cut(s)	44, 336, 491, 669, 822, 902
SatI	GCNGC	6 cut(s)	66, 326, 342, 444, 531, 971
Sau3AI	GATC	5 cut(s)	147, 250, 369, 676, 826
Sau96I	GGNCC	2 cut(s)	190, 470
ScaI	AGTACT	2 cut(s)	615, 745
SchI	GAGTC	6 cut(s)	9, 79, 94, 406, 547, 656
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	8 cut(s)	276, 343, 360, 526, 628, 652, 700, 838
Sfr274I	CTCGAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
SphI	GCATGC	1 cut(s)	802
Sse9I	AATT	8 cut(s)	214, 266, 282, 429, 461, 544, 670, 716
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	352, 530, 970
SspMI	CTAG	3 cut(s)	438, 657, 687
StuI	AGGCCT	1 cut(s)	257
StyI	CCWWGG	2 cut(s)	194, 513
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	249, 316, 415
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	8 cut(s)	214, 266, 282, 429, 461, 544, 670, 716
TatI	WGTACW	3 cut(s)	613, 743, 931
TauI	GCSGC	2 cut(s)	533, 973
Tru1I	TTAA	6 cut(s)	44, 336, 491, 669, 822, 902
Tru9I	TTAA	6 cut(s)	44, 336, 491, 669, 822, 902
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	3 cut(s)	82, 659, 855
TseI	GCWGC	4 cut(s)	65, 325, 341, 443
Tsp45I	GTSAC	3 cut(s)	82, 659, 855
TspDTI	ATGAA	3 cut(s)	115, 474, 729
TspRI	CASTG	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	414
XspI	CTAG	3 cut(s)	438, 657, 687
ZrmI	AGTACT	2 cut(s)	615, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.