Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

70468373 .. 70472150

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG407700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGGCTTCTTCGACCTGAGCGTACCCTACACCGACCTCCCGCCGCCGGACCGCTCAACCCGCGCAAAGCTCGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTCGCCTACAACCGTACGATCAAGGGCGTCATGTCCGATCGCGACCGTTGCTCCATCCCCCTCCTCACTCTCCCTTCTCTCCTCAAACACTCTCCTCACCTCACCTCCTCCGTCGGCTTCCACCGCGACCTCCTCGGCGTCCCACGCGCCACCCCTTTCCGCCAGTACACGCGCCTCACCGTCTGCGCCGAAACCCCTGCCCAGGCTCAGGCCCTCAATTCCGGCAACCCCGTTTTGAAGACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAGTCCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATTGCGATTGATTTTTCGGACAAGTTACCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCCATTGAGCGGAAGGTGTATTTTGAGATCACATATGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAACTGCGAATGAATTTAGAGGGCCATATGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGGACTCTTATATCTAATGCAGTGAGAAAAAAACACTATTATAAGGAAGCCATTAGAGTTGAAGTACTACCATCAGGTCAAGAAAGTGATGGGAACAAACCTTTGTCTAGTGACTCTTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTCAGTTCTTGACAGCATGCCATCACTTGGATTTCAAGTTAACGATCTTATATCTGGAACTAATGTGGTTGTGTCACAACCATTGGCTACTCAGAAAAACATCGTTTCTGCTCCCCAGTTAAATGTGCAATCAGTTGCAACTGATGGAGTACAAGAGCAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCAAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACAATGTTATTCCAATTGAAGATCCTTCGATAACCACTAGAGCAGAACCAAATAGTCCAGGTGAAACAGATGGGATTGCCACAGGTATTCATGATGTACAATCACAGAAGTCTGCAATTGCAAATGCTGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAATGAATTCAGCTGAATCAATGGGGATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTGTGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACCACTGGAGCGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACTACAGGAATTCTTAATGTTCTATCACAGAAGAGTATGACTAATTGCGAATTGATTGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCCTGAATCAGGAGTTCAAGTTCCCACTAATTATCAGGACAGTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACGGGTAAAGAAAAAAAATCTTTGCCTCTGGATTCAGCATTGGATAAAAGTATTTCGGAAGTGGATGAATTGACGGAACCTGGAGATGATGTAGTTGTACTTGCAAATCAGGTTCCAGTTCTGGATTCTAGTGATGAGATGACAGTAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGGATGAGCAAGAACATGGGAAAGCTGACGTTGAATTGAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTGACATTTCTTCCTCTCAAGCGATTGCTGCATGCTACACCTTTTAAGAAGGCTTGGAAAAGTAAAAGGAGACATAAGATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

722

Amino Acids

78.69

Weight (kDa)

5.55

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	5 - 241	3.3e-52	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 768
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccBSI	CCGCTC	4 cut(s)	54, 493, 1147, 1505
AccII	CGCG	5 cut(s)	63, 147, 231, 252, 277
AccIII	TCCGGA	1 cut(s)	1519
AclWI	GGATC	3 cut(s)	848, 861, 1229
AcsI	RAATTY	4 cut(s)	638, 1387, 1419, 1548
AcuI	CTGAAG	2 cut(s)	945, 1460
AcyI	GRCGYC	3 cut(s)	105, 132, 243
AfaI	GTAC	8 cut(s)	24, 121, 272, 792, 922, 1110, 1311, 1884
AfiI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1670
AjnI	CCWGG	3 cut(s)	306, 1270, 1864
AloI	GAACNNNNNNTCC	2 cut(s)	1665, 1697
AluBI	AGCT	9 cut(s)	70, 91, 482, 701, 1208, 1394, 1487, 2003, 2019
AluI	AGCT	9 cut(s)	70, 91, 482, 701, 1208, 1394, 1487, 2003, 2019
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	689, 1955, 2146
AlwI	GGATC	3 cut(s)	848, 861, 1229
AlwNI	CAGNNNCTG	2 cut(s)	472, 1934
Ama87I	CYCGRG	2 cut(s)	86, 591
Aor13HI	TCCGGA	1 cut(s)	1519
AoxI	GGCC	4 cut(s)	81, 315, 396, 647
ApeKI	GCWGC	4 cut(s)	466, 482, 620, 2110
ApoI	RAATTY	4 cut(s)	638, 1387, 1419, 1548
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 656, 688
AspLEI	GCGC	4 cut(s)	65, 254, 279, 293
AspS9I	GGNCC	5 cut(s)	49, 82, 316, 647, 1715
AsuC2I	CCSGG	1 cut(s)	1713
AsuHPI	GGTGA	7 cut(s)	194, 199, 274, 881, 887, 1286, 2095
AvaI	CYCGRG	2 cut(s)	86, 591
AvaII	GGWCC	2 cut(s)	49, 1715
BamHI	GGATCC	1 cut(s)	853
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	469, 478, 607, 2097
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	3 cut(s)	308, 1272, 1866
BcnI	CCSGG	1 cut(s)	1713
BcoDI	GTCTC	3 cut(s)	689, 1955, 2146
BfaI	CTAG	8 cut(s)	546, 615, 834, 864, 1191, 1251, 1634, 1914
BfmI	CTRYAG	1 cut(s)	1542
BisI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2111
BlsI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1149, 2112
BmcAI	AGTACT	2 cut(s)	792, 922
Bme1390I	CCNGG	4 cut(s)	308, 1272, 1713, 1866
Bme18I	GGWCC	2 cut(s)	49, 1715
BmeT110I	CYCGRG	2 cut(s)	86, 591
BmgT120I	GGNCC	5 cut(s)	49, 82, 316, 647, 1715
BmiI	GGNNCC	3 cut(s)	855, 1863, 1899
BmrFI	CCNGG	4 cut(s)	308, 1272, 1713, 1866
BmrI	ACTGGG	1 cut(s)	1069
BmsI	GCATC	1 cut(s)	1459
BmuI	ACTGGG	1 cut(s)	1069
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	4 cut(s)	901, 1392, 1521, 1887
Bpu10I	CCTNAGC	3 cut(s)	17, 312, 702
BpuEI	CTTGAG	1 cut(s)	2084
BpuMI	CCSGG	1 cut(s)	1713
BsaHI	GRCGYC	3 cut(s)	105, 132, 243
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2028, 2055
BsaWI	WCCGGW	1 cut(s)	1519
BsaXI	ACNNNNNCTCC	8 cut(s)	140, 170, 194, 224, 1665, 1695, 1860, 1890
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1670
Bse1I	ACTGG	7 cut(s)	268, 379, 918, 1075, 1375, 1504, 1901
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	1519
BseBI	CCWGG	3 cut(s)	308, 1272, 1866
BseDI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2028, 2055
BseGI	GGATG	5 cut(s)	159, 1528, 1780, 1855, 1987
BseLI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1670
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	5 cut(s)	8, 326, 1064, 1187, 1622
BseNI	ACTGG	7 cut(s)	268, 379, 918, 1075, 1375, 1504, 1901
BseRI	GAGGAG	5 cut(s)	158, 176, 189, 202, 227
BseXI	GCAGC	4 cut(s)	469, 478, 607, 2097
Bsh1236I	CGCG	5 cut(s)	63, 147, 231, 252, 277
Bsh1285I	CGRYCG	2 cut(s)	145, 151
BshFI	GGCC	4 cut(s)	83, 317, 398, 649
BsiEI	CGRYCG	2 cut(s)	145, 151
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	86, 591
BsiSI	CCGG	5 cut(s)	47, 102, 327, 1520, 1713
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 986, 1670
BsmAI	GTCTC	3 cut(s)	689, 1955, 2146
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	83, 317, 398, 649
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	2 cut(s)	86, 591
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	1519
Bsp1407I	TGTACA	1 cut(s)	1309
Bsp143I	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
Bsp19I	CCATGG	1 cut(s)	690
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	83, 317, 398, 649
BspCNI	CTCAG	5 cut(s)	9, 325, 1063, 1186, 1621
BspEI	TCCGGA	1 cut(s)	1519
BspFNI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BspHI	TCATGA	3 cut(s)	1303, 1423, 1957
BspLI	GGNNCC	3 cut(s)	855, 1863, 1899
BspPI	GGATC	3 cut(s)	848, 861, 1229
BspTNI	GGTCTC	1 cut(s)	689
BsrBI	CCGCTC	4 cut(s)	54, 493, 1147, 1505
BsrDI	GCAATG	1 cut(s)	674
BsrGI	TGTACA	1 cut(s)	1309
BsrI	ACTGG	7 cut(s)	268, 379, 918, 1075, 1375, 1504, 1901
BssECI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2028, 2055
BssMI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
BssNI	GRCGYC	3 cut(s)	105, 132, 243
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	4 cut(s)	78, 690, 2028, 2055
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	308, 1272, 1866
Bst4CI	ACNGT	5 cut(s)	119, 152, 286, 1703, 1930
Bst6I	CTCTTC	2 cut(s)	1565, 1722
BstACI	GRCGYC	3 cut(s)	105, 132, 243
BstAUI	TGTACA	1 cut(s)	1309
BstC8I	GCNNGC	2 cut(s)	977, 2115
BstDEI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1608
BstDSI	CCRYGG	1 cut(s)	690
BstENI	CCTNNNNNAGG	1 cut(s)	1668
BstF5I	GGATG	5 cut(s)	159, 1528, 1780, 1855, 1987
BstFNI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BstHHI	GCGC	4 cut(s)	65, 254, 279, 293
BstKTI	GATC	7 cut(s)	126, 145, 394, 513, 856, 1006, 1237
BstMAI	GTCTC	3 cut(s)	689, 1955, 2146
BstMBI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
BstMCI	CGRYCG	2 cut(s)	145, 151
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2110
BstNI	CCWGG	3 cut(s)	308, 1272, 1866
BstNSI	RCATGY	2 cut(s)	979, 2117
BstSCI	CCNGG	4 cut(s)	306, 1270, 1711, 1864
BstSFI	CTRYAG	1 cut(s)	1542
BstUI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BstV1I	GCAGC	4 cut(s)	469, 478, 607, 2097
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	853, 1234
BstYI	RGATCY	2 cut(s)	853, 1234
BsuRI	GGCC	4 cut(s)	83, 317, 398, 649
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	159, 1528, 1780, 1855, 1987
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	5 cut(s)	753, 1368, 1436, 1497, 1708
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	977, 2115
CaiI	CAGNNNCTG	2 cut(s)	472, 1934
CciI	TCATGA	3 cut(s)	1303, 1423, 1957
CfoI	GCGC	4 cut(s)	65, 254, 279, 293
Cfr13I	GGNCC	5 cut(s)	49, 82, 316, 647, 1715
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	3 cut(s)	94, 121, 232
Csp6I	GTAC	8 cut(s)	23, 120, 271, 791, 921, 1109, 1310, 1883
CspI	CGGWCCG	1 cut(s)	49
CviQI	GTAC	8 cut(s)	23, 120, 271, 791, 921, 1109, 1310, 1883
DdeI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1608
DpnI	GATC	7 cut(s)	125, 144, 393, 512, 855, 1005, 1236
DpnII	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
DraI	TTTAAA	1 cut(s)	1465
Eam1104I	CTCTTC	2 cut(s)	1565, 1722
EarI	CTCTTC	2 cut(s)	1565, 1722
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	78, 690, 2028, 2055
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	49, 1715
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	945, 1460
Eco88I	CYCGRG	2 cut(s)	86, 591
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	1668
EcoO109I	RGGNCCY	2 cut(s)	82, 316
EcoRI	GAATTC	2 cut(s)	1387, 1548
EcoRII	CCWGG	3 cut(s)	306, 1270, 1864
EcoT14I	CCWWGG	4 cut(s)	78, 690, 2028, 2055
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	78, 690, 2028, 2055
FaqI	GGGAC	1 cut(s)	230
FauI	CCCGC	2 cut(s)	48, 68
FauNDI	CATATG	2 cut(s)	517, 652
Fnu4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2111
FokI	GGATG	5 cut(s)	146, 1535, 1787, 1862, 1994
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2111
FspBI	CTAG	8 cut(s)	546, 615, 834, 864, 1191, 1251, 1634, 1914
GlaI	GCGC	4 cut(s)	64, 253, 278, 292
GluI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2111
GsuI	CTGGAG	4 cut(s)	901, 1392, 1521, 1887
HaeIII	GGCC	4 cut(s)	83, 317, 398, 649
HapII	CCGG	5 cut(s)	47, 102, 327, 1520, 1713
HgaI	GACGC	3 cut(s)	94, 121, 232
HhaI	GCGC	4 cut(s)	65, 254, 279, 293
Hin1I	GRCGYC	3 cut(s)	105, 132, 243
Hin6I	GCGC	4 cut(s)	63, 252, 277, 291
HinP1I	GCGC	4 cut(s)	63, 252, 277, 291
HincII	GTYRAC	2 cut(s)	1000, 1213
HindII	GTYRAC	2 cut(s)	1000, 1213
HinfI	GANTC	9 cut(s)	589, 730, 839, 1397, 1516, 1667, 1817, 1910, 2042
HpaI	GTTAAC	2 cut(s)	1000, 1213
HpaII	CCGG	5 cut(s)	47, 102, 327, 1520, 1713
HphI	GGTGA	7 cut(s)	194, 199, 274, 881, 887, 1286, 2095
Hpy166II	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy188I	TCNGA	6 cut(s)	142, 442, 1053, 1176, 1843, 2041
Hpy8I	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy99I	CGWCG	2 cut(s)	110, 221
HpyAV	CCTTC	7 cut(s)	189, 490, 543, 591, 866, 1248, 2125
HpyCH4III	ACNGT	5 cut(s)	119, 152, 286, 1703, 1930
HpyCH4IV	ACGT	1 cut(s)	2007
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2110
HpyF3I	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1608
HpySE526I	ACGT	1 cut(s)	2007
Hsp92I	GRCGYC	3 cut(s)	105, 132, 243
HspAI	GCGC	4 cut(s)	63, 252, 277, 291
Kpn2I	TCCGGA	1 cut(s)	1519
KspAI	GTTAAC	2 cut(s)	1000, 1213
Kzo9I	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
LmnI	GCTCC	6 cut(s)	161, 1075, 1144, 1373, 1492, 1502
Lsp1109I	GCAGC	4 cut(s)	469, 478, 607, 2097
LweI	GCATC	1 cut(s)	1459
MaeI	CTAG	8 cut(s)	546, 615, 834, 864, 1191, 1251, 1634, 1914
MaeII	ACGT	1 cut(s)	2007
MaeIII	GTNAC	9 cut(s)	73, 447, 836, 911, 1032, 1447, 1537, 1930, 2083
MalI	GATC	7 cut(s)	125, 144, 393, 512, 855, 1005, 1236
MbiI	CCGCTC	4 cut(s)	54, 493, 1147, 1505
MboI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
MboII	GAAGA	6 cut(s)	355, 1244, 1582, 1739, 2080, 2084
MfeI	CAATTG	2 cut(s)	1227, 1329
MflI	RGATCY	2 cut(s)	853, 1234
MhlI	GDGCHC	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	583, 724, 833
MmeI	TCCRAC	1 cut(s)	1122
MroI	TCCGGA	1 cut(s)	1519
MspA1I	CMGCKG	1 cut(s)	1394
MspI	CCGG	5 cut(s)	47, 102, 327, 1520, 1713
MspR9I	CCNGG	4 cut(s)	308, 1272, 1713, 1866
MunI	CAATTG	2 cut(s)	1227, 1329
MvaI	CCWGG	3 cut(s)	308, 1272, 1866
MvnI	CGCG	5 cut(s)	63, 147, 231, 252, 277
MwoI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2110
NciI	CCSGG	1 cut(s)	1713
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	2 cut(s)	517, 652
NdeII	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
NlaIV	GGNNCC	3 cut(s)	855, 1863, 1899
NmeAIII	GCCGAG	2 cut(s)	72, 219
NmuCI	GTSAC	5 cut(s)	73, 836, 1032, 1447, 2083
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	2 cut(s)	979, 2117
PaeI	GCATGC	2 cut(s)	979, 2117
PaeR7I	CTCGAG	2 cut(s)	86, 591
PagI	TCATGA	3 cut(s)	1303, 1423, 1957
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	6 cut(s)	1397, 1516, 1667, 1817, 1910, 2042
Pfl23II	CGTACG	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1149, 2112
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	583, 724, 833
PpsI	GAGTC	3 cut(s)	583, 724, 833
PsiI	TTATAA	2 cut(s)	560, 768
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	306, 1270, 1864
PspGI	CCWGG	3 cut(s)	306, 1270, 1864
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	3 cut(s)	855, 1863, 1899
PspPI	GGNCC	5 cut(s)	49, 82, 316, 647, 1715
PspXI	VCTCGAGB	2 cut(s)	86, 591
PstNI	CAGNNNCTG	2 cut(s)	472, 1934
PsuI	RGATCY	2 cut(s)	853, 1234
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	1394
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	8 cut(s)	24, 121, 272, 792, 922, 1110, 1311, 1884
RsaNI	GTAC	8 cut(s)	23, 120, 271, 791, 921, 1109, 1310, 1883
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2111
Sau3AI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
Sau96I	GGNCC	5 cut(s)	49, 82, 316, 647, 1715
ScaI	AGTACT	2 cut(s)	792, 922
SchI	GAGTC	3 cut(s)	583, 724, 833
ScrFI	CCNGG	4 cut(s)	308, 1272, 1713, 1866
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	1459
SfcI	CTRYAG	1 cut(s)	1542
Sfr274I	CTCGAG	2 cut(s)	86, 591
SinI	GGWCC	2 cut(s)	49, 1715
SlaI	CTCGAG	2 cut(s)	86, 591
SmlI	CTYRAG	3 cut(s)	86, 591, 2099
SmoI	CTYRAG	3 cut(s)	86, 591, 2099
SphI	GCATGC	2 cut(s)	979, 2117
SseBI	AGGCCT	1 cut(s)	398
SspMI	CTAG	8 cut(s)	546, 615, 834, 864, 1191, 1251, 1634, 1914
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	4 cut(s)	306, 1270, 1711, 1864
StyI	CCWWGG	4 cut(s)	78, 690, 2028, 2055
TaaI	ACNGT	5 cut(s)	119, 152, 286, 1703, 1930
TaiI	ACGT	1 cut(s)	2010
TaqI	TCGA	6 cut(s)	12, 87, 390, 457, 592, 1241
TaqII	GACCGA	1 cut(s)	671
TatI	WGTACW	6 cut(s)	270, 790, 920, 1108, 1309, 1882
TauI	GCSGC	3 cut(s)	46, 710, 1150
TfiI	GAWTC	6 cut(s)	1397, 1516, 1667, 1817, 1910, 2042
TscAI	CASTG	5 cut(s)	753, 1375, 1443, 1504, 1708
TseFI	GTSAC	5 cut(s)	73, 836, 1032, 1447, 2083
TseI	GCWGC	4 cut(s)	466, 482, 620, 2110
Tsp45I	GTSAC	5 cut(s)	73, 836, 1032, 1447, 2083
TspDTI	ATGAA	9 cut(s)	389, 651, 1176, 1292, 1400, 1412, 1740, 1791, 1866
TspGWI	ACGGA	2 cut(s)	205, 1874
TspRI	CASTG	5 cut(s)	753, 1375, 1443, 1504, 1708
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	2 cut(s)	49, 1715
XagI	CCTNNNNNAGG	1 cut(s)	1668
XapI	RAATTY	4 cut(s)	638, 1387, 1419, 1548
XceI	RCATGY	2 cut(s)	979, 2117
XhoI	CTCGAG	2 cut(s)	86, 591
XspI	CTAG	8 cut(s)	546, 615, 834, 864, 1191, 1251, 1634, 1914
ZrmI	AGTACT	2 cut(s)	792, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.