Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

36616663 .. 36631660

Gene Structure 14998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3312 bp

ATGGGCTTCTTCGACCTGAGCGTACCCTACACCGACCTCCCGCCGCCGGACCGCTCAACCCGCGCAAAGCTCGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTTGCCTACAACCGTACGATCAAGGGCGTCATGTCCGATCGCGACCGTTGCTCCATCCCCCTCCTCACTCTTCCTTCTCTCCTCAAACACTCTCCTCACCTCACCTCCTCCGTCGGCTTCCACCGCGACCTCCTCGGCGTCCCACACGCCACCCCTTTCCGCCAGTACACGCGCCTCACTGTCTGCGCCGAAACCCCTGCCCAGGCGCAGGCCCTCAATTCCGGCAACCCCATTTTGAAAACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAGTCCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATTGCGATTGATTTTTCGGAGAAGTTACCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCCATTGAGCGGAAGGTGTATTTTGAGATCACATATGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAACTGTGAATGAATTTAGAGGGCCATTTGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGGACTCTTATATCTAATGCAGTGAGGAAAAAACACTATTATAAGAAATCCATTAGAGTTGAAGTACTACCATCAGGTCAAGAAAGTGATGGGAACAAACCTTCGTCTAGTGGCTCTTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTTGTTTATTGACAGCATGCCATCACTTGGATTTCAAGTTAACGATCTTATAGCTGGAACTAATGTGGTTGTGTCACAACCATTGGCTACTCAGAAAATCATCGTTTCTACTCCCCAGTTAAATGTGCAATCAGTTGCAACTGATGGAGTACAAGAACAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCGAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACAATGTTATTCCAATTGAAGATCCTTCGATAACCACAAGAGCAGAACCAAATAGTCCAGATGAAACAGATGGGATTGCTACAGATATTCATGATGTGCAATCACAGAAGTCTGCGATTGCAAATGCTGTTAATGATGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAACGAATTCAGCTGAATCAATGGGGATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTGTGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACCACTGGAGCGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACTACAGAAATTCTTAATGTTCTATCACAGAAGAGTATGACTAATTGCGAATTGAATGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCCTGATTCTGAAGTTCAGGTTCCCACTAATTATCAGGACACTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACAGGTAAAGAAAAAAAATCTTTGCCTATGGATTCAGCATTGGATAAAAGTATTTTGGAAGTGGATGAATTGACGGAACCTGGAGAGGATGTAGTTGTACTTGCAAATCAGGTTCCTGTTCTGGATTCTAGTGATGAGATGACAGCAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGCATGAGCAAGAACATGGGAAAGCTGATGTTGAATTTAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTCTTAAGATACTCTAGAATGGTCCAAGTGAGGGATAGAAGAGAGGGGAAGATCTCGGCGAGAATAGACCGGGTGGAAGGTATTTTTGCTTCTTTGGTGGCTTTGATGTTCAATTGCGTGAAGAAAGATGACATTGATTACTCTCCTTACGAAGAGGGCGAGTGGAGGAAGTTCATAATAGGAAGTTGTGATGCAAAGCTCCTAGAACTGCTGGATTGTAAAGATTGCCCAACTCTTGGGCGTTGTATGCTTATGACGACAAAGTTACTAGATGAAGAAATTGAAGAGGATGAGATGTTCTGGAATCAGGAGGCTCTTAGAGAGGAGGAAGAAGATGATAACTATGAAGTGGAGCTGAAAGTTGCTGATTTGTTTGATAATGACTTGGTTAAAGATGTTAGGTTTAATGGTTGTGGAGGCCTAATCTTGGCATCTTTCATGACATATGCGTCGGAGCACCTTGCAACTAGATCATTCTTGAGAGGCCTTGAAGACCGAGATGCTACGAGAACCACCACTTTAACTGGGTTCCATTTTTCTGTAATTGCACTCGTTGGCCTCGTCTCCAATGCTAGCGGTTATTCTGCCTCCAAGCATGTTCCCTTTTGGGAGCTTCTTTGGTTCTCCATCGTTGCCAATGTCTCCATCACCGCCATGAACTTCAGCCTCATGATCAACTCTGTCGGCTTTTACCAGATTTCGAAGTTGAGCATGATTCCCGTGGTTTGTGTGATGGAATGGATTCTTAACAACAAGCAGTATTCCAAGGAGGTTAAAATGATATGCGCCTGCCTAGCAGTTTTGTCCACTTCTTTCCAGCAAATTTCTGTTGGGTCTCTTCAAAAGAAACAGTCACTTGGATCCTTTGAATTGCTGAGTAAGACTGCTCCAATTCAAGCCATTTCTCTACTCATTCTCGGCCCATTCATTGATTACATCCTTAGTGGTACATTCATAACAGACTATAAGATGTCTTCTGGTGCCATTGCATTCATTCTTCTTTTGTGCACCTTAGCTGTGTTTTGCAATATTAGCCAGTACCTCTGTATTGGACTTGTTGGCATGGTGATTTATAGTTGGGCTGTCAAGGCAGAAAAACAGTCTGGCAAACCCGTGTCCCATTCAAAAACCAGCATGACAGAAGAGGAAATTGAACTTTTGAAGGCAGGACTGGATACCACTACTGTGAAGGATATTGAACATGGAGCAACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

1103

Amino Acids

121.49

Weight (kDa)

5.02

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	5 - 241	6.2e-51	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 768
AasI	GACNNNNNNGTC	1 cut(s)	2539
AccB1I	GGYRCC	1 cut(s)	3071
AccB7I	CCANNNNNTGG	2 cut(s)	986, 2327
AccBSI	CCGCTC	4 cut(s)	54, 493, 1147, 1514
AccII	CGCG	4 cut(s)	63, 147, 231, 277
AccIII	TCCGGA	1 cut(s)	1528
AclWI	GGATC	5 cut(s)	848, 861, 1229, 2946, 2959
AcsI	RAATTY	6 cut(s)	638, 1396, 1428, 1557, 2021, 2913
AcuI	CTGAAG	3 cut(s)	1469, 1701, 2737
AcyI	GRCGYC	2 cut(s)	132, 243
AfaI	GTAC	9 cut(s)	24, 121, 272, 792, 922, 1110, 1893, 3040, 3131
AfiI	CCNNNNNNNGG	8 cut(s)	46, 307, 313, 492, 986, 2122, 2327, 2518
AflII	CTTAAG	1 cut(s)	2095
AjnI	CCWGG	2 cut(s)	306, 1873
AleI	CACNNNNGTG	1 cut(s)	3275
AloI	GAACNNNNNNTCC	2 cut(s)	2372, 2404
Alw21I	GWGCWC	3 cut(s)	93, 2550, 3101
Alw26I	GTCTC	5 cut(s)	689, 1964, 2659, 2737, 2931
Alw44I	GTGCAC	1 cut(s)	3097
AlwI	GGATC	5 cut(s)	848, 861, 1229, 2946, 2959
AlwNI	CAGNNNCTG	2 cut(s)	472, 1943
Ama87I	CYCGRG	2 cut(s)	86, 591
Aor13HI	TCCGGA	1 cut(s)	1528
AoxI	GGCC	8 cut(s)	81, 315, 396, 647, 2509, 2575, 2647, 3010
ApaLI	GTGCAC	1 cut(s)	3097
ApeKI	GCWGC	3 cut(s)	466, 482, 620
ApoI	RAATTY	6 cut(s)	638, 1396, 1428, 1557, 2021, 2913
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
Asp700I	GAANNNNTTC	1 cut(s)	2832
AspLEI	GCGC	5 cut(s)	65, 279, 293, 313, 2879
AspS9I	GGNCC	7 cut(s)	49, 82, 316, 647, 1724, 2113, 3011
AsuC2I	CCSGG	2 cut(s)	1722, 2162
AsuHPI	GGTGA	6 cut(s)	194, 199, 881, 887, 2731, 3169
AsuII	TTCGAA	1 cut(s)	2792
AsuNHI	GCTAGC	1 cut(s)	2663
AvaI	CYCGRG	2 cut(s)	86, 591
AvaII	GGWCC	3 cut(s)	49, 1724, 2113
BaeGI	GKGCMC	1 cut(s)	3101
BamHI	GGATCC	2 cut(s)	853, 2951
BanI	GGYRCC	1 cut(s)	3071
BanII	GRGCYC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	2164, 2196
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	2 cut(s)	2589, 3057
Bbv12I	GWGCWC	3 cut(s)	93, 2550, 3101
BbvI	GCAGC	3 cut(s)	469, 478, 607
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	308, 1875
BciVI	GTATCC	1 cut(s)	3259
BclI	TGATCA	1 cut(s)	2763
BcnI	CCSGG	2 cut(s)	1722, 2162
BcoDI	GTCTC	5 cut(s)	689, 1964, 2659, 2737, 2931
BfmI	CTRYAG	2 cut(s)	1293, 1551
BfrI	CTTAAG	1 cut(s)	2095
BfuI	GTATCC	1 cut(s)	3259
BglII	AGATCT	1 cut(s)	2142
BisI	GCNGC	6 cut(s)	44, 467, 483, 621, 708, 1148
BlsI	GCNGC	6 cut(s)	45, 468, 484, 622, 709, 1149
BmcAI	AGTACT	2 cut(s)	792, 922
Bme1390I	CCNGG	4 cut(s)	308, 1722, 1875, 2162
Bme18I	GGWCC	3 cut(s)	49, 1724, 2113
BmeT110I	CYCGRG	2 cut(s)	86, 591
BmgT120I	GGNCC	7 cut(s)	49, 82, 316, 647, 1724, 2113, 3011
BmiI	GGNNCC	7 cut(s)	855, 1692, 1872, 1908, 2621, 2953, 3073
BmrFI	CCNGG	4 cut(s)	308, 1722, 1875, 2162
BmrI	ACTGGG	2 cut(s)	1069, 2625
BmsI	GCATC	4 cut(s)	1468, 2272, 2531, 2581
BmtI	GCTAGC	1 cut(s)	2667
BmuI	ACTGGG	2 cut(s)	1069, 2625
BpiI	GAAGAC	2 cut(s)	2589, 3057
BpmI	CTGGAG	4 cut(s)	901, 1401, 1530, 1896
Bpu10I	CCTNAGC	3 cut(s)	17, 702, 3103
Bpu14I	TTCGAA	1 cut(s)	2792
BpuEI	CTTGAG	1 cut(s)	2590
BpuMI	CCSGG	2 cut(s)	1722, 2162
BsaHI	GRCGYC	2 cut(s)	132, 243
BsaI	GGTCTC	2 cut(s)	689, 2931
BsaJI	CCNNGG	8 cut(s)	78, 238, 306, 690, 2037, 2064, 2811, 2856
BsaWI	WCCGGW	1 cut(s)	1528
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 194, 224, 1869, 1899
Bsc4I	CCNNNNNNNGG	8 cut(s)	46, 307, 313, 492, 986, 2122, 2327, 2518
Bse1I	ACTGG	9 cut(s)	268, 379, 918, 1075, 1384, 1513, 2620, 3127, 3267
Bse3DI	GCAATG	2 cut(s)	674, 3075
BseAI	TCCGGA	1 cut(s)	1528
BseBI	CCWGG	2 cut(s)	308, 1875
BseDI	CCNNGG	8 cut(s)	78, 238, 306, 690, 2037, 2064, 2811, 2856
BseGI	GGATG	7 cut(s)	159, 1537, 1789, 1864, 1888, 2386, 3027
BseLI	CCNNNNNNNGG	8 cut(s)	46, 307, 313, 492, 986, 2122, 2327, 2518
BseMI	GCAATG	2 cut(s)	674, 3075
BseMII	CTCAG	5 cut(s)	8, 1064, 1187, 1631, 2957
BseNI	ACTGG	9 cut(s)	268, 379, 918, 1075, 1384, 1513, 2620, 3127, 3267
BseRI	GAGGAG	6 cut(s)	158, 176, 189, 202, 227, 2429
BseSI	GKGCMC	1 cut(s)	3101
BseXI	GCAGC	3 cut(s)	469, 478, 607
Bsh1236I	CGCG	4 cut(s)	63, 147, 231, 277
Bsh1285I	CGRYCG	2 cut(s)	145, 151
BshFI	GGCC	8 cut(s)	83, 317, 398, 649, 2511, 2577, 2649, 3012
BshNI	GGYRCC	1 cut(s)	3071
BsiEI	CGRYCG	2 cut(s)	145, 151
BsiHKAI	GWGCWC	3 cut(s)	93, 2550, 3101
BsiHKCI	CYCGRG	2 cut(s)	86, 591
BsiSI	CCGG	6 cut(s)	47, 102, 327, 1529, 1722, 2161
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	230, 3193
BslI	CCNNNNNNNGG	8 cut(s)	46, 307, 313, 492, 986, 2122, 2327, 2518
BsmAI	GTCTC	5 cut(s)	689, 1964, 2659, 2737, 2931
BsmBI	CGTCTC	1 cut(s)	2659
BsmFI	GGGAC	2 cut(s)	230, 3193
BsmI	GAATGC	1 cut(s)	3080
BsnI	GGCC	8 cut(s)	83, 317, 398, 649, 2511, 2577, 2649, 3012
Bso31I	GGTCTC	2 cut(s)	689, 2931
BsoBI	CYCGRG	2 cut(s)	86, 591
Bsp119I	TTCGAA	1 cut(s)	2792
Bsp1286I	GDGCHC	3 cut(s)	93, 2550, 3101
Bsp13I	TCCGGA	1 cut(s)	1528
Bsp19I	CCATGG	1 cut(s)	690
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	8 cut(s)	83, 317, 398, 649, 2511, 2577, 2649, 3012
BspCNI	CTCAG	5 cut(s)	9, 1063, 1186, 1630, 2958
BspEI	TCCGGA	1 cut(s)	1528
BspFNI	CGCG	4 cut(s)	63, 147, 231, 277
BspHI	TCATGA	5 cut(s)	1303, 1432, 1966, 2529, 2760
BspLI	GGNNCC	7 cut(s)	855, 1692, 1872, 1908, 2621, 2953, 3073
BspOI	GCTAGC	1 cut(s)	2667
BspPI	GGATC	5 cut(s)	848, 861, 1229, 2946, 2959
BspT104I	TTCGAA	1 cut(s)	2792
BspT107I	GGYRCC	1 cut(s)	3071
BspTI	CTTAAG	1 cut(s)	2095
BspTNI	GGTCTC	2 cut(s)	689, 2931
BsrBI	CCGCTC	4 cut(s)	54, 493, 1147, 1514
BsrDI	GCAATG	2 cut(s)	674, 3075
BsrI	ACTGG	9 cut(s)	268, 379, 918, 1075, 1384, 1513, 2620, 3127, 3267
BssECI	CCNNGG	8 cut(s)	78, 238, 306, 690, 2037, 2064, 2811, 2856
BssNI	GRCGYC	2 cut(s)	132, 243
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	5 cut(s)	78, 690, 2037, 2064, 2856
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	308, 1875
Bst4CI	ACNGT	7 cut(s)	119, 152, 286, 631, 2943, 3192, 3277
Bst6I	CTCTTC	8 cut(s)	180, 1574, 1731, 2125, 2238, 2370, 2934, 3228
BstACI	GRCGYC	2 cut(s)	132, 243
BstAFI	CTTAAG	1 cut(s)	2095
BstBI	TTCGAA	1 cut(s)	2792
BstC8I	GCNNGC	4 cut(s)	315, 977, 2665, 2881
BstDSI	CCRYGG	2 cut(s)	690, 2811
BstF5I	GGATG	7 cut(s)	159, 1537, 1789, 1864, 1888, 2386, 3027
BstFNI	CGCG	4 cut(s)	63, 147, 231, 277
BstHHI	GCGC	5 cut(s)	65, 279, 293, 313, 2879
BstMAI	GTCTC	5 cut(s)	689, 1964, 2659, 2737, 2931
BstMCI	CGRYCG	2 cut(s)	145, 151
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 102, 153, 228, 707, 2338, 2885, 3123, 3179
BstNI	CCWGG	2 cut(s)	308, 1875
BstNSI	RCATGY	2 cut(s)	979, 2690
BstSCI	CCNGG	4 cut(s)	306, 1720, 1873, 2160
BstSFI	CTRYAG	2 cut(s)	1293, 1551
BstSLI	GKGCMC	1 cut(s)	3101
BstUI	CGCG	4 cut(s)	63, 147, 231, 277
BstV1I	GCAGC	3 cut(s)	469, 478, 607
BstV2I	GAAGAC	2 cut(s)	2589, 3057
BstX2I	RGATCY	4 cut(s)	853, 1234, 2142, 2951
BstYI	RGATCY	4 cut(s)	853, 1234, 2142, 2951
BsuI	GTATCC	1 cut(s)	3259
BsuRI	GGCC	8 cut(s)	83, 317, 398, 649, 2511, 2577, 2649, 3012
BtgI	CCRYGG	2 cut(s)	690, 2811
BtsCI	GGATG	7 cut(s)	159, 1537, 1789, 1864, 1888, 2386, 3027
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	6 cut(s)	282, 753, 1377, 1445, 1506, 1710
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	4 cut(s)	315, 977, 2665, 2881
CaiI	CAGNNNCTG	2 cut(s)	472, 1943
CciI	TCATGA	5 cut(s)	1303, 1432, 1966, 2529, 2760
CfoI	GCGC	5 cut(s)	65, 279, 293, 313, 2879
Cfr13I	GGNCC	7 cut(s)	49, 82, 316, 647, 1724, 2113, 3011
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	3 cut(s)	121, 232, 2529
Csp6I	GTAC	9 cut(s)	23, 120, 271, 791, 921, 1109, 1892, 3039, 3130
CspI	CGGWCCG	1 cut(s)	49
CviQI	GTAC	9 cut(s)	23, 120, 271, 791, 921, 1109, 1892, 3039, 3130
DraI	TTTAAA	1 cut(s)	1474
DrdI	GACNNNNNNGTC	1 cut(s)	2539
DseDI	GACNNNNNNGTC	1 cut(s)	2539
Eam1104I	CTCTTC	8 cut(s)	180, 1574, 1731, 2125, 2238, 2370, 2934, 3228
EarI	CTCTTC	8 cut(s)	180, 1574, 1731, 2125, 2238, 2370, 2934, 3228
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	5 cut(s)	78, 690, 2037, 2064, 2856
Eco147I	AGGCCT	3 cut(s)	398, 2511, 2577
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	689, 2931
Eco47I	GGWCC	3 cut(s)	49, 1724, 2113
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	3 cut(s)	1469, 1701, 2737
Eco88I	CYCGRG	2 cut(s)	86, 591
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	82, 316
EcoRI	GAATTC	1 cut(s)	1396
EcoRII	CCWGG	2 cut(s)	306, 1873
EcoT14I	CCWWGG	5 cut(s)	78, 690, 2037, 2064, 2856
EcoT22I	ATGCAT	1 cut(s)	1992
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	5 cut(s)	78, 690, 2037, 2064, 2856
Esp3I	CGTCTC	1 cut(s)	2659
FaqI	GGGAC	2 cut(s)	230, 3193
FauI	CCCGC	2 cut(s)	48, 68
FauNDI	CATATG	2 cut(s)	517, 2536
FbaI	TGATCA	1 cut(s)	2763
Fnu4HI	GCNGC	6 cut(s)	44, 467, 483, 621, 708, 1148
FokI	GGATG	7 cut(s)	146, 1544, 1796, 1871, 1895, 2393, 3014
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	6 cut(s)	44, 467, 483, 621, 708, 1148
GlaI	GCGC	5 cut(s)	64, 278, 292, 312, 2878
GluI	GCNGC	6 cut(s)	44, 467, 483, 621, 708, 1148
GsuI	CTGGAG	4 cut(s)	901, 1401, 1530, 1896
HaeIII	GGCC	8 cut(s)	83, 317, 398, 649, 2511, 2577, 2649, 3012
HapII	CCGG	6 cut(s)	47, 102, 327, 1529, 1722, 2161
HgaI	GACGC	3 cut(s)	121, 232, 2529
HhaI	GCGC	5 cut(s)	65, 279, 293, 313, 2879
Hin1I	GRCGYC	2 cut(s)	132, 243
Hin6I	GCGC	5 cut(s)	63, 277, 291, 311, 2877
HinP1I	GCGC	5 cut(s)	63, 277, 291, 311, 2877
HincII	GTYRAC	2 cut(s)	1000, 1213
HindII	GTYRAC	2 cut(s)	1000, 1213
HpaI	GTTAAC	2 cut(s)	1000, 1213
HpaII	CCGG	6 cut(s)	47, 102, 327, 1529, 1722, 2161
HphI	GGTGA	6 cut(s)	194, 199, 881, 887, 2731, 3169
Hpy166II	GTNNAC	5 cut(s)	273, 1000, 1213, 2898, 3099
Hpy188I	TCNGA	7 cut(s)	142, 442, 1053, 1176, 1681, 2050, 2545
Hpy8I	GTNNAC	5 cut(s)	273, 1000, 1213, 2898, 3099
Hpy99I	CGWCG	2 cut(s)	221, 2545
HpyCH4III	ACNGT	7 cut(s)	119, 152, 286, 631, 2943, 3192, 3277
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 102, 153, 228, 707, 2338, 2885, 3123, 3179
Hsp92I	GRCGYC	2 cut(s)	132, 243
HspAI	GCGC	5 cut(s)	63, 277, 291, 311, 2877
Kpn2I	TCCGGA	1 cut(s)	1528
Ksp22I	TGATCA	1 cut(s)	2763
KspAI	GTTAAC	2 cut(s)	1000, 1213
Lsp1109I	GCAGC	3 cut(s)	469, 478, 607
LweI	GCATC	4 cut(s)	1468, 2272, 2531, 2581
MaeIII	GTNAC	8 cut(s)	73, 447, 911, 1032, 1456, 1546, 2355, 2943
MbiI	CCGCTC	4 cut(s)	54, 493, 1147, 1514
MfeI	CAATTG	2 cut(s)	1227, 2203
MflI	RGATCY	4 cut(s)	853, 1234, 2142, 2951
MhlI	GDGCHC	3 cut(s)	93, 2550, 3101
MlyI	GAGTC	2 cut(s)	583, 724
MmeI	TCCRAC	2 cut(s)	1122, 2523
Mph1103I	ATGCAT	1 cut(s)	1992
MroI	TCCGGA	1 cut(s)	1528
MroXI	GAANNNNTTC	1 cut(s)	2832
MslI	CAYNNNNRTG	2 cut(s)	2744, 3275
MspA1I	CMGCKG	1 cut(s)	1403
MspCI	CTTAAG	1 cut(s)	2095
MspI	CCGG	6 cut(s)	47, 102, 327, 1529, 1722, 2161
MspR9I	CCNGG	4 cut(s)	308, 1722, 1875, 2162
MunI	CAATTG	2 cut(s)	1227, 2203
Mva1269I	GAATGC	1 cut(s)	3080
MvaI	CCWGG	2 cut(s)	308, 1875
MvnI	CGCG	4 cut(s)	63, 147, 231, 277
MwoI	GCNNNNNNNGC	9 cut(s)	60, 102, 153, 228, 707, 2338, 2885, 3123, 3179
NciI	CCSGG	2 cut(s)	1722, 2162
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	2 cut(s)	517, 2536
NheI	GCTAGC	1 cut(s)	2663
NlaIV	GGNNCC	7 cut(s)	855, 1692, 1872, 1908, 2621, 2953, 3073
NmeAIII	GCCGAG	4 cut(s)	72, 219, 2126, 2988
NmuCI	GTSAC	4 cut(s)	73, 1032, 1456, 2943
NruI	TCGCGA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	1992
NspI	RCATGY	2 cut(s)	979, 2690
NspV	TTCGAA	1 cut(s)	2792
OliI	CACNNNNGTG	1 cut(s)	3275
PaeI	GCATGC	1 cut(s)	979
PaeR7I	CTCGAG	2 cut(s)	86, 591
PagI	TCATGA	5 cut(s)	1303, 1432, 1966, 2529, 2760
PceI	AGGCCT	3 cut(s)	398, 2511, 2577
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 2247, 2649
PctI	GAATGC	1 cut(s)	3080
PdmI	GAANNNNTTC	1 cut(s)	2832
PfeI	GAWTC	9 cut(s)	1406, 1525, 1676, 1826, 1919, 2051, 2395, 2806, 2833
Pfl23II	CGTACG	1 cut(s)	119
PflMI	CCANNNNNTGG	2 cut(s)	986, 2327
PkrI	GCNGC	6 cut(s)	45, 468, 484, 622, 709, 1149
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	2 cut(s)	583, 724
PpsI	GAGTC	2 cut(s)	583, 724
PsiI	TTATAA	2 cut(s)	560, 768
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	306, 1873
PspGI	CCWGG	2 cut(s)	306, 1873
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	7 cut(s)	855, 1692, 1872, 1908, 2621, 2953, 3073
PspPI	GGNCC	7 cut(s)	49, 82, 316, 647, 1724, 2113, 3011
PspXI	VCTCGAGB	2 cut(s)	86, 591
PstNI	CAGNNNCTG	2 cut(s)	472, 1943
PsuI	RGATCY	4 cut(s)	853, 1234, 2142, 2951
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	1403
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	9 cut(s)	24, 121, 272, 792, 922, 1110, 1893, 3040, 3131
RsaNI	GTAC	9 cut(s)	23, 120, 271, 791, 921, 1109, 1892, 3039, 3130
RseI	CAYNNNNRTG	2 cut(s)	2744, 3275
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	6 cut(s)	44, 467, 483, 621, 708, 1148
Sau96I	GGNCC	7 cut(s)	49, 82, 316, 647, 1724, 2113, 3011
ScaI	AGTACT	2 cut(s)	792, 922
SchI	GAGTC	2 cut(s)	583, 724
ScrFI	CCNGG	4 cut(s)	308, 1722, 1875, 2162
SduI	GDGCHC	3 cut(s)	93, 2550, 3101
SfaNI	GCATC	4 cut(s)	1468, 2272, 2531, 2581
SfcI	CTRYAG	2 cut(s)	1293, 1551
Sfr274I	CTCGAG	2 cut(s)	86, 591
SfuI	TTCGAA	1 cut(s)	2792
SinI	GGWCC	3 cut(s)	49, 1724, 2113
SlaI	CTCGAG	2 cut(s)	86, 591
SmiMI	CAYNNNNRTG	2 cut(s)	2744, 3275
SmlI	CTYRAG	4 cut(s)	86, 591, 2095, 2569
SmoI	CTYRAG	4 cut(s)	86, 591, 2095, 2569
SphI	GCATGC	1 cut(s)	979
SseBI	AGGCCT	3 cut(s)	398, 2511, 2577
SspI	AATATT	1 cut(s)	3121
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	3 cut(s)	398, 2511, 2577
StyD4I	CCNGG	4 cut(s)	306, 1720, 1873, 2160
StyI	CCWWGG	5 cut(s)	78, 690, 2037, 2064, 2856
TaaI	ACNGT	7 cut(s)	119, 152, 286, 631, 2943, 3192, 3277
TaqI	TCGA	7 cut(s)	12, 87, 390, 457, 592, 1241, 2792
TaqII	GACCGA	2 cut(s)	671, 2601
TatI	WGTACW	5 cut(s)	270, 790, 920, 1108, 1891
TauI	GCSGC	3 cut(s)	46, 710, 1150
TfiI	GAWTC	9 cut(s)	1406, 1525, 1676, 1826, 1919, 2051, 2395, 2806, 2833
TscAI	CASTG	6 cut(s)	289, 753, 1384, 1452, 1513, 1717
TseFI	GTSAC	4 cut(s)	73, 1032, 1456, 2943
TseI	GCWGC	3 cut(s)	466, 482, 620
Tsp45I	GTSAC	4 cut(s)	73, 1032, 1456, 2943
TspGWI	ACGGA	2 cut(s)	205, 1883
TspRI	CASTG	6 cut(s)	289, 753, 1384, 1452, 1513, 1717
Van91I	CCANNNNNTGG	2 cut(s)	986, 2327
Vha464I	CTTAAG	1 cut(s)	2095
VneI	GTGCAC	1 cut(s)	3097
VpaK11BI	GGWCC	3 cut(s)	49, 1724, 2113
XapI	RAATTY	6 cut(s)	638, 1396, 1428, 1557, 2021, 2913
XbaI	TCTAGA	1 cut(s)	2105
XceI	RCATGY	2 cut(s)	979, 2690
XhoI	CTCGAG	2 cut(s)	86, 591
XmnI	GAANNNNTTC	1 cut(s)	2832
ZrmI	AGTACT	2 cut(s)	792, 922
Zsp2I	ATGCAT	1 cut(s)	1992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.