Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

820658 .. 824233

Gene Structure 3576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGGCTTCTTCGACCTGAGCGTGCCCTACACCGACCACCCGCCGCCGGACCGCTCAACCCGCGCAAAGCTTGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTCGCCTACAACCATACGATCAAGGGCGTCATGTCCGATCGCGACCGTTGCTCCATCCCCCTCCTCACTCTCCCTTCTCTCCTCAAACACTCTCCTCACCTCACCTCCTCCGTCAGCTTCCACCGCGACCTCCTCGGCGTCCCACGCGCCACCCCTTTCCGCCAGTACACGCGCCTCACCGTCTGCGCCGAAACCCCTGCCCAGGCTCAGGCCCTCAATTCCGGCAACCCCATTTTGAAGACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAGTCCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATTGCGATTGATTTTTTGGAGAAGTTACCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCTATTGAGTGGAAGGTGTATTTTGAGATCACATATGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAACTGCGAATGAATTTAGAGGGCCATATGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGGACGCTTATATCTAATGCAGTGAGAAAAAAACACTATTATAAGGAAGCCATTAGAGTTGAAGTACTACCATCAGGTCAAGAAAGTGATGGGAACAAACCTTCGTCTAGTGACTCTTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTCGGTTATTGACAGCATGCCATCACTTGGATTTCAAGTTAACGATCTTATAGCTGGAACTAATGTGGTTGTGTCACAACCATTGGCTACTCAGAAAAACTTCGTTTCTGCTCCCCAGTTAAATGTGCAATCAGTTGCAACTGATGGAGTACAAGAACAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCGAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACAATGTTATTCCAATTGAAGATCCTTCAATAACCACAAGAGCAGAACCAAATAGTCCAGATGAAACAGATGGGATTGCTACAGATATTCATGATGTGCAATCACAGAAGTCTGCGATTGCAAATGCTGTTAATGATGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAATGAATTCAGCTGAATCAATGGGGATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTGTGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACCACTGGAGCGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACTACAGAAATTCTTAATGTTCTATCACAGAAGAGTATGGCTAATTGCGAATTGAATGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCCTGATTCTGAAGTTCAGGTTCCCACAAATTATCAGGACACTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACAGCATTGGATAAAAGTATTTTGGAAGTGGATGAATTGACAGAACCTGGAGATGATGTAGTTGTACTTGCAAATCAGGTTCCTGTTCTGGATTCTAGTGATGAGATGACAGCAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGCATGAGCAAGAACATGGGAAAGCTGATGTTGAATTGAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTGACATTTCTTCCGCTCAAGCGATTGCTGCATGCTACACCTTTTAAGAAGGCTTGGAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

707

Amino Acids

77.33

Weight (kDa)

5.08

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	4 - 241	6.7e-52	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 768
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccBSI	CCGCTC	4 cut(s)	54, 1147, 1514, 2074
AccII	CGCG	5 cut(s)	63, 147, 231, 252, 277
AccIII	TCCGGA	1 cut(s)	1528
AclWI	GGATC	3 cut(s)	848, 861, 1229
AcsI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
AcuI	CTGAAG	2 cut(s)	1469, 1701
AcyI	GRCGYC	3 cut(s)	105, 132, 243
AfaI	GTAC	5 cut(s)	272, 792, 922, 1110, 1860
AfiI	CCNNNNNNNGG	4 cut(s)	46, 307, 313, 986
AjnI	CCWGG	2 cut(s)	306, 1840
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	689, 1931
AlwI	GGATC	3 cut(s)	848, 861, 1229
AlwNI	CAGNNNCTG	3 cut(s)	472, 1841, 1910
Ama87I	CYCGRG	2 cut(s)	86, 591
Aor13HI	TCCGGA	1 cut(s)	1528
AoxI	GGCC	4 cut(s)	81, 315, 396, 647
ApeKI	GCWGC	4 cut(s)	466, 482, 620, 2086
ApoI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 656, 688
Asp700I	GAANNNNTTC	1 cut(s)	1058
AspLEI	GCGC	4 cut(s)	65, 254, 279, 293
AspS9I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
AsuC2I	CCSGG	1 cut(s)	1722
AsuHPI	GGTGA	6 cut(s)	194, 199, 274, 881, 887, 2071
AvaI	CYCGRG	2 cut(s)	86, 591
AvaII	GGWCC	2 cut(s)	49, 1724
BaeGI	GKGCMC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	853
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	469, 478, 607, 2073
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	308, 1842
BcnI	CCSGG	1 cut(s)	1722
BcoDI	GTCTC	2 cut(s)	689, 1931
BfaI	CTAG	7 cut(s)	546, 615, 834, 864, 1191, 1643, 1890
BfmI	CTRYAG	2 cut(s)	1293, 1551
BisI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2087
BlsI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1149, 2088
BmcAI	AGTACT	2 cut(s)	792, 922
Bme1390I	CCNGG	3 cut(s)	308, 1722, 1842
Bme18I	GGWCC	2 cut(s)	49, 1724
BmeT110I	CYCGRG	2 cut(s)	86, 591
BmgT120I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
BmiI	GGNNCC	3 cut(s)	855, 1692, 1875
BmrFI	CCNGG	3 cut(s)	308, 1722, 1842
BmrI	ACTGGG	1 cut(s)	1069
BmsI	GCATC	1 cut(s)	1468
BmuI	ACTGGG	1 cut(s)	1069
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	4 cut(s)	901, 1401, 1530, 1863
Bpu10I	CCTNAGC	3 cut(s)	17, 312, 702
BpuEI	CTTGAG	1 cut(s)	2060
BpuMI	CCSGG	1 cut(s)	1722
BsaHI	GRCGYC	3 cut(s)	105, 132, 243
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2004, 2031
BsaWI	WCCGGW	1 cut(s)	1528
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 194, 224, 1836, 1866
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 307, 313, 986
Bse1I	ACTGG	6 cut(s)	268, 379, 918, 1075, 1384, 1513
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	1528
BseBI	CCWGG	2 cut(s)	308, 1842
BseDI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2004, 2031
BseGI	GGATG	4 cut(s)	159, 1537, 1789, 1831
BseLI	CCNNNNNNNGG	4 cut(s)	46, 307, 313, 986
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	5 cut(s)	8, 326, 1064, 1187, 1631
BseNI	ACTGG	6 cut(s)	268, 379, 918, 1075, 1384, 1513
BseRI	GAGGAG	5 cut(s)	158, 176, 189, 202, 227
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	469, 478, 607, 2073
Bsh1236I	CGCG	5 cut(s)	63, 147, 231, 252, 277
Bsh1285I	CGRYCG	2 cut(s)	145, 151
BshFI	GGCC	4 cut(s)	83, 317, 398, 649
BsiEI	CGRYCG	2 cut(s)	145, 151
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	86, 591
BsiSI	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	4 cut(s)	46, 307, 313, 986
BsmAI	GTCTC	2 cut(s)	689, 1931
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	83, 317, 398, 649
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	2 cut(s)	86, 591
Bsp1286I	GDGCHC	2 cut(s)	27, 93
Bsp13I	TCCGGA	1 cut(s)	1528
Bsp143I	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
Bsp19I	CCATGG	1 cut(s)	690
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	83, 317, 398, 649
BspCNI	CTCAG	5 cut(s)	9, 325, 1063, 1186, 1630
BspEI	TCCGGA	1 cut(s)	1528
BspFNI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BspHI	TCATGA	3 cut(s)	1303, 1432, 1933
BspLI	GGNNCC	3 cut(s)	855, 1692, 1875
BspPI	GGATC	3 cut(s)	848, 861, 1229
BspTNI	GGTCTC	1 cut(s)	689
BsrBI	CCGCTC	4 cut(s)	54, 1147, 1514, 2074
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	6 cut(s)	268, 379, 918, 1075, 1384, 1513
BssECI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2004, 2031
BssMI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
BssNI	GRCGYC	3 cut(s)	105, 132, 243
BssT1I	CCWWGG	4 cut(s)	78, 690, 2004, 2031
Bst2UI	CCWGG	2 cut(s)	308, 1842
Bst4CI	ACNGT	2 cut(s)	152, 286
Bst6I	CTCTTC	2 cut(s)	1574, 1731
BstACI	GRCGYC	3 cut(s)	105, 132, 243
BstC8I	GCNNGC	3 cut(s)	23, 977, 2091
BstDEI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	159, 1537, 1789, 1831
BstFNI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BstHHI	GCGC	4 cut(s)	65, 254, 279, 293
BstKTI	GATC	7 cut(s)	126, 145, 394, 513, 856, 1006, 1237
BstMAI	GTCTC	2 cut(s)	689, 1931
BstMBI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
BstMCI	CGRYCG	2 cut(s)	145, 151
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2086
BstNI	CCWGG	2 cut(s)	308, 1842
BstNSI	RCATGY	2 cut(s)	979, 2093
BstSCI	CCNGG	3 cut(s)	306, 1720, 1840
BstSFI	CTRYAG	2 cut(s)	1293, 1551
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BstV1I	GCAGC	4 cut(s)	469, 478, 607, 2073
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	853, 1234
BstYI	RGATCY	2 cut(s)	853, 1234
BsuRI	GGCC	4 cut(s)	83, 317, 398, 649
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	4 cut(s)	159, 1537, 1789, 1831
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	5 cut(s)	753, 1377, 1445, 1506, 1710
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	23, 977, 2091
CaiI	CAGNNNCTG	3 cut(s)	472, 1841, 1910
CciI	TCATGA	3 cut(s)	1303, 1432, 1933
CfoI	GCGC	4 cut(s)	65, 254, 279, 293
Cfr13I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	4 cut(s)	94, 121, 232, 739
Csp6I	GTAC	5 cut(s)	271, 791, 921, 1109, 1859
CspI	CGGWCCG	1 cut(s)	49
CviQI	GTAC	5 cut(s)	271, 791, 921, 1109, 1859
DdeI	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
DpnI	GATC	7 cut(s)	125, 144, 393, 512, 855, 1005, 1236
DpnII	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
DraI	TTTAAA	1 cut(s)	1474
Eam1104I	CTCTTC	2 cut(s)	1574, 1731
EarI	CTCTTC	2 cut(s)	1574, 1731
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	78, 690, 2004, 2031
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	49, 1724
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	1469, 1701
Eco88I	CYCGRG	2 cut(s)	86, 591
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	82, 316
EcoRI	GAATTC	1 cut(s)	1396
EcoRII	CCWGG	2 cut(s)	306, 1840
EcoT14I	CCWWGG	4 cut(s)	78, 690, 2004, 2031
EcoT22I	ATGCAT	1 cut(s)	1959
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	78, 690, 2004, 2031
FaqI	GGGAC	1 cut(s)	230
FauI	CCCGC	2 cut(s)	48, 68
FauNDI	CATATG	2 cut(s)	517, 652
Fnu4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2087
FokI	GGATG	4 cut(s)	146, 1544, 1796, 1838
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2087
FspBI	CTAG	7 cut(s)	546, 615, 834, 864, 1191, 1643, 1890
GlaI	GCGC	4 cut(s)	64, 253, 278, 292
GluI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2087
GsuI	CTGGAG	4 cut(s)	901, 1401, 1530, 1863
HaeIII	GGCC	4 cut(s)	83, 317, 398, 649
HapII	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
HgaI	GACGC	4 cut(s)	94, 121, 232, 739
HhaI	GCGC	4 cut(s)	65, 254, 279, 293
Hin1I	GRCGYC	3 cut(s)	105, 132, 243
Hin6I	GCGC	4 cut(s)	63, 252, 277, 291
HinP1I	GCGC	4 cut(s)	63, 252, 277, 291
HincII	GTYRAC	2 cut(s)	1000, 1213
HindII	GTYRAC	2 cut(s)	1000, 1213
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	7 cut(s)	589, 839, 1406, 1525, 1676, 1886, 2018
HpaI	GTTAAC	2 cut(s)	1000, 1213
HpaII	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
HphI	GGTGA	6 cut(s)	194, 199, 274, 881, 887, 2071
Hpy166II	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy188I	TCNGA	5 cut(s)	142, 1053, 1176, 1681, 2017
Hpy8I	GTNNAC	3 cut(s)	273, 1000, 1213
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	8 cut(s)	189, 490, 543, 591, 837, 866, 1248, 2101
HpyCH4III	ACNGT	2 cut(s)	152, 286
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2086
HpyF3I	CTNAG	7 cut(s)	17, 312, 570, 702, 1050, 1173, 1617
Hsp92I	GRCGYC	3 cut(s)	105, 132, 243
HspAI	GCGC	4 cut(s)	63, 252, 277, 291
Kpn2I	TCCGGA	1 cut(s)	1528
KspAI	GTTAAC	2 cut(s)	1000, 1213
Kzo9I	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
LmnI	GCTCC	6 cut(s)	161, 1075, 1144, 1382, 1501, 1511
Lsp1109I	GCAGC	4 cut(s)	469, 478, 607, 2073
LweI	GCATC	1 cut(s)	1468
MaeI	CTAG	7 cut(s)	546, 615, 834, 864, 1191, 1643, 1890
MaeIII	GTNAC	8 cut(s)	73, 447, 836, 911, 1032, 1456, 1546, 2059
MalI	GATC	7 cut(s)	125, 144, 393, 512, 855, 1005, 1236
MbiI	CCGCTC	4 cut(s)	54, 1147, 1514, 2074
MboI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
MboII	GAAGA	6 cut(s)	355, 1244, 1591, 1748, 2056, 2060
MfeI	CAATTG	1 cut(s)	1227
MflI	RGATCY	2 cut(s)	853, 1234
MhlI	GDGCHC	2 cut(s)	27, 93
MlyI	GAGTC	2 cut(s)	583, 833
MmeI	TCCRAC	1 cut(s)	1122
Mph1103I	ATGCAT	1 cut(s)	1959
MroI	TCCGGA	1 cut(s)	1528
MroXI	GAANNNNTTC	1 cut(s)	1058
MspA1I	CMGCKG	1 cut(s)	1403
MspI	CCGG	5 cut(s)	47, 102, 327, 1529, 1722
MspR9I	CCNGG	3 cut(s)	308, 1722, 1842
MunI	CAATTG	1 cut(s)	1227
MvaI	CCWGG	2 cut(s)	308, 1842
MvnI	CGCG	5 cut(s)	63, 147, 231, 252, 277
MwoI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2086
NciI	CCSGG	1 cut(s)	1722
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	2 cut(s)	517, 652
NdeII	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
NlaIV	GGNNCC	3 cut(s)	855, 1692, 1875
NmeAIII	GCCGAG	2 cut(s)	72, 219
NmuCI	GTSAC	5 cut(s)	73, 836, 1032, 1456, 2059
NruI	TCGCGA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	1959
NspI	RCATGY	2 cut(s)	979, 2093
PaeI	GCATGC	2 cut(s)	979, 2093
PaeR7I	CTCGAG	2 cut(s)	86, 591
PagI	TCATGA	3 cut(s)	1303, 1432, 1933
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	1058
PfeI	GAWTC	5 cut(s)	1406, 1525, 1676, 1886, 2018
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1149, 2088
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	2 cut(s)	583, 833
PpsI	GAGTC	2 cut(s)	583, 833
PsiI	TTATAA	2 cut(s)	560, 768
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	306, 1840
PspGI	CCWGG	2 cut(s)	306, 1840
PspN4I	GGNNCC	3 cut(s)	855, 1692, 1875
PspPI	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
PspXI	VCTCGAGB	2 cut(s)	86, 591
PstNI	CAGNNNCTG	3 cut(s)	472, 1841, 1910
PsuI	RGATCY	2 cut(s)	853, 1234
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	1403
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	5 cut(s)	272, 792, 922, 1110, 1860
RsaNI	GTAC	5 cut(s)	271, 791, 921, 1109, 1859
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1148, 2087
Sau3AI	GATC	7 cut(s)	123, 142, 391, 510, 853, 1003, 1234
Sau96I	GGNCC	5 cut(s)	49, 82, 316, 647, 1724
ScaI	AGTACT	2 cut(s)	792, 922
SchI	GAGTC	2 cut(s)	583, 833
ScrFI	CCNGG	3 cut(s)	308, 1722, 1842
SduI	GDGCHC	2 cut(s)	27, 93
SfaNI	GCATC	1 cut(s)	1468
SfcI	CTRYAG	2 cut(s)	1293, 1551
Sfr274I	CTCGAG	2 cut(s)	86, 591
SinI	GGWCC	2 cut(s)	49, 1724
SlaI	CTCGAG	2 cut(s)	86, 591
SmlI	CTYRAG	3 cut(s)	86, 591, 2075
SmoI	CTYRAG	3 cut(s)	86, 591, 2075
SphI	GCATGC	2 cut(s)	979, 2093
SseBI	AGGCCT	1 cut(s)	398
SspMI	CTAG	7 cut(s)	546, 615, 834, 864, 1191, 1643, 1890
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	306, 1720, 1840
StyI	CCWWGG	4 cut(s)	78, 690, 2004, 2031
TaaI	ACNGT	2 cut(s)	152, 286
TaqI	TCGA	5 cut(s)	12, 87, 390, 457, 592
TaqII	GACCGA	1 cut(s)	671
TatI	WGTACW	5 cut(s)	270, 790, 920, 1108, 1858
TauI	GCSGC	3 cut(s)	46, 710, 1150
TfiI	GAWTC	5 cut(s)	1406, 1525, 1676, 1886, 2018
TscAI	CASTG	5 cut(s)	753, 1384, 1452, 1513, 1717
TseFI	GTSAC	5 cut(s)	73, 836, 1032, 1456, 2059
TseI	GCWGC	4 cut(s)	466, 482, 620, 2086
Tsp45I	GTSAC	5 cut(s)	73, 836, 1032, 1456, 2059
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	5 cut(s)	753, 1384, 1452, 1513, 1717
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	2 cut(s)	49, 1724
XapI	RAATTY	4 cut(s)	638, 1396, 1428, 1557
XceI	RCATGY	2 cut(s)	979, 2093
XhoI	CTCGAG	2 cut(s)	86, 591
XmnI	GAANNNNTTC	1 cut(s)	1058
XspI	CTAG	7 cut(s)	546, 615, 834, 864, 1191, 1643, 1890
ZrmI	AGTACT	2 cut(s)	792, 922
Zsp2I	ATGCAT	1 cut(s)	1959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.