Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018073.1

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1120

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018073.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1037 bp

ataatctctgccttgctcttcagttattggtagattggactcgaggaaggaatataattatctctagtgctgccccaactgtgaatgaatttagagggccatttgatgttgcaaacttaatgtcattgctcggtctctccatggaacgagctaaggcggctatttcaagaaattgtaggactcttatatctaatgcagtgaggaaaaaacactattataagaaatccattagagttgaagtactaccatcaggtcaagaaagtgatgggaacaaaccttcgtctagtggctcttttaattgggatcccatctctagtggtgaaggtgatttgcttttagatgatttggcaaaggctttcagtaactccagtactaaagcaaccaaaatggtcaaagccattgattttgctttgtttattgacagcatgccatcacttggatttcaagttaacgatcttatagctggaactaatgtggttgtgtcacaaccattggctactcagaaaatcatcgtttctgctccccagttaaatgtgcaatcagttgcaactgatggagtacaagaacaatctgttttatgtgatactatgttggagcggcaaaggttcaaaagcgaaaatcctcagaaattatattcatctagtgatactaccaaagctgttaacaatgttattccaattgaagatccttcgataaccacaagagcagaaccaaatagtccagatgaaacagatgggattgctacagatattcttgatgtgcaatcacagaagtctgcgattgcaaatgctattaatgatgttatggaaattgaagttcctacaaccactggagcagaaccaacgaattcagctgaatcaatggggattacaaaagaaattcatgatgtgcaatcactgaagtctgtgactgccaaaacttttaaagatgctatggaaattgaagctcctacgaccactggagcggaaacaaagaatccggatggaatagatggggttactacagaaattcttaatgttctatcacagaagagtatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

345

Amino Acids

37.11

Weight (kDa)

4.83

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccBSI	CCGCTC	2 cut(s)	597, 964
AccIII	TCCGGA	1 cut(s)	978
AciI	CCGC	3 cut(s)	157, 597, 964
AclWI	GGATC	3 cut(s)	298, 311, 679
AcsI	RAATTY	4 cut(s)	88, 846, 878, 1007
AcuI	CTGAAG	2 cut(s)	4, 919
AfaI	GTAC	3 cut(s)	242, 372, 560
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	7 cut(s)	167, 238, 445, 609, 682, 814, 943
AluBI	AGCT	5 cut(s)	151, 463, 658, 853, 946
AluI	AGCT	5 cut(s)	151, 463, 658, 853, 946
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	298, 311, 679
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	978
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	4 cut(s)	88, 846, 878, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AseI	ATTAAT	1 cut(s)	794
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	331, 337
AvaI	CYCGRG	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	8 cut(s)	255, 259, 316, 438, 547, 727, 976, 985
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	4 cut(s)	65, 284, 314, 641
BfmI	CTRYAG	2 cut(s)	743, 1001
BisI	GCNGC	3 cut(s)	71, 158, 598
BlsI	GCNGC	3 cut(s)	72, 159, 599
BmcAI	AGTACT	2 cut(s)	242, 372
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	918
BmuI	ACTGGG	1 cut(s)	519
BpmI	CTGGAG	3 cut(s)	351, 851, 980
Bpu10I	CCTNAGC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	978
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	4 cut(s)	368, 525, 834, 963
Bse3DI	GCAATG	1 cut(s)	124
BseAI	TCCGGA	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	987
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	514, 637
BseNI	ACTGG	4 cut(s)	368, 525, 834, 963
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	979
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	41
Bsp13I	TCCGGA	1 cut(s)	978
Bsp143I	GATC	3 cut(s)	303, 453, 684
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	3 cut(s)	157, 597, 964
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	513, 636
BspEI	TCCGGA	1 cut(s)	978
BspHI	TCATGA	1 cut(s)	882
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	3 cut(s)	298, 311, 679
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	139
BsrBI	CCGCTC	2 cut(s)	597, 964
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	4 cut(s)	368, 525, 834, 963
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	3 cut(s)	303, 453, 684
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	23, 1024
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	152, 500, 623
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	987
BstKTI	GATC	3 cut(s)	306, 456, 687
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	3 cut(s)	303, 453, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	429
BstSFI	CTRYAG	2 cut(s)	743, 1001
BstV1I	GCAGC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	303, 684
BstYI	RGATCY	2 cut(s)	303, 684
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	987
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	4 cut(s)	203, 827, 895, 956
Cac8I	GCNNGC	1 cut(s)	427
CciI	TCATGA	1 cut(s)	882
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	241, 371, 559
CviAII	CATG	3 cut(s)	141, 426, 883
CviQI	GTAC	3 cut(s)	241, 371, 559
DdeI	CTNAG	3 cut(s)	152, 500, 623
DpnI	GATC	3 cut(s)	305, 455, 686
DpnII	GATC	3 cut(s)	303, 453, 684
DraI	TTTAAA	1 cut(s)	924
Eam1104I	CTCTTC	2 cut(s)	23, 1024
EarI	CTCTTC	2 cut(s)	23, 1024
Eco130I	CCWWGG	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	4, 919
Eco88I	CYCGRG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	846
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	3 cut(s)	144, 429, 886
FatI	CATG	3 cut(s)	140, 425, 882
Fnu4HI	GCNGC	3 cut(s)	71, 158, 598
FokI	GGATG	1 cut(s)	994
Fsp4HI	GCNGC	3 cut(s)	71, 158, 598
FspBI	CTAG	4 cut(s)	65, 284, 314, 641
GluI	GCNGC	3 cut(s)	71, 158, 598
GsuI	CTGGAG	3 cut(s)	351, 851, 980
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	979
Hin1II	CATG	3 cut(s)	144, 429, 886
HincII	GTYRAC	2 cut(s)	450, 663
HindII	GTYRAC	2 cut(s)	450, 663
HinfI	GANTC	4 cut(s)	39, 180, 856, 975
HpaI	GTTAAC	2 cut(s)	450, 663
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	2 cut(s)	331, 337
Hpy166II	GTNNAC	2 cut(s)	450, 663
Hpy188I	TCNGA	2 cut(s)	503, 626
Hpy188III	TCNNGA	6 cut(s)	167, 256, 721, 754, 883, 979
Hpy8I	GTNNAC	2 cut(s)	450, 663
HpyAV	CCTTC	4 cut(s)	41, 287, 316, 698
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	112, 196, 537, 547, 762, 784, 891
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	3 cut(s)	152, 500, 623
Hsp92II	CATG	3 cut(s)	144, 429, 886
Kpn2I	TCCGGA	1 cut(s)	978
KspAI	GTTAAC	2 cut(s)	450, 663
Kzo9I	GATC	3 cut(s)	303, 453, 684
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	5 cut(s)	525, 594, 832, 951, 961
LpnPI	CCDG	8 cut(s)	236, 381, 449, 538, 734, 815, 944, 992
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	918
MaeI	CTAG	4 cut(s)	65, 284, 314, 641
MaeIII	GTNAC	4 cut(s)	361, 482, 906, 996
MalI	GATC	3 cut(s)	305, 455, 686
MbiI	CCGCTC	2 cut(s)	597, 964
MboI	GATC	3 cut(s)	303, 453, 684
MboII	GAAGA	2 cut(s)	10, 694
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	2 cut(s)	303, 684
MlyI	GAGTC	2 cut(s)	33, 174
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	4 cut(s)	37, 88, 194, 632
MroI	TCCGGA	1 cut(s)	978
MseI	TTAA	8 cut(s)	118, 296, 449, 529, 662, 794, 923, 1013
MspA1I	CMGCKG	1 cut(s)	853
MspI	CCGG	1 cut(s)	979
MunI	CAATTG	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	303, 453, 684
NlaIII	CATG	3 cut(s)	144, 429, 886
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	482, 906
NspI	RCATGY	1 cut(s)	429
PaeI	GCATGC	1 cut(s)	429
PaeR7I	CTCGAG	1 cut(s)	41
PagI	TCATGA	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	856, 975
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	72, 159, 599
PleI	GAGTC	2 cut(s)	33, 174
PpsI	GAGTC	2 cut(s)	33, 174
PshBI	ATTAAT	1 cut(s)	794
PsiI	TTATAA	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	97
PspXI	VCTCGAGB	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	303, 684
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	3 cut(s)	242, 372, 560
RsaNI	GTAC	3 cut(s)	241, 371, 559
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	8 cut(s)	118, 296, 449, 529, 662, 794, 923, 1013
SatI	GCNGC	3 cut(s)	71, 158, 598
Sau3AI	GATC	3 cut(s)	303, 453, 684
Sau96I	GGNCC	1 cut(s)	97
ScaI	AGTACT	2 cut(s)	242, 372
SchI	GAGTC	2 cut(s)	33, 174
SetI	ASST	9 cut(s)	153, 255, 279, 327, 465, 607, 660, 855, 948
SfaNI	GCATC	1 cut(s)	918
SfcI	CTRYAG	2 cut(s)	743, 1001
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SphI	GCATGC	1 cut(s)	429
SsiI	CCGC	3 cut(s)	157, 597, 964
SspMI	CTAG	4 cut(s)	65, 284, 314, 641
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	42, 691
TaqII	GACCGA	1 cut(s)	121
TatI	WGTACW	3 cut(s)	240, 370, 558
TauI	GCSGC	2 cut(s)	160, 600
TfiI	GAWTC	2 cut(s)	856, 975
Tru1I	TTAA	8 cut(s)	118, 296, 449, 529, 662, 794, 923, 1013
Tru9I	TTAA	8 cut(s)	118, 296, 449, 529, 662, 794, 923, 1013
TscAI	CASTG	4 cut(s)	203, 834, 902, 963
TseFI	GTSAC	2 cut(s)	482, 906
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	2 cut(s)	482, 906
TspDTI	ATGAA	4 cut(s)	101, 626, 740, 871
TspRI	CASTG	4 cut(s)	203, 834, 902, 963
Van91I	CCANNNNNTGG	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	794
XapI	RAATTY	4 cut(s)	88, 846, 878, 1007
XceI	RCATGY	1 cut(s)	429
XhoI	CTCGAG	1 cut(s)	41
XspI	CTAG	4 cut(s)	65, 284, 314, 641
ZrmI	AGTACT	2 cut(s)	242, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.