Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002965

Physical Location & Seq

Genomic Coordinates Reverse (-)

1100217 .. 1103530

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGGCTTCTTCGACCTAAGCGTACCCTACACCGACCTCCCGCCGCCGGACCGCTCAACCCGCGCAAAGCTCGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTCGCCTACAACCGTACGATCAAGGGCGTCATGTCCGATCGCGACCGTTGCTCCATCCCCCTCCTCACTCTCCCTTCTCTCCTCAAACACTCTCCTCACCTCACCTCCTCCGTCGGCTTCCACCGCGACCTCCTCGGCGTCCCACGCGCCACCCCTTTCCACCAGTACACGCGCCTCACCGTCTGCGCCGAAACCCCTGCCCAGGCTCAGGCCCTCAATTCCGGCAACCCCATTTTGAAGACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAGTCCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATTGCGATTGATTTTTCGGAGAAGTTACCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCCATTGAGCGGAAGGTGTATTTTGAGATCACATGTGCAGGGCTTATTGCCGATGTTCAAACTAGAAGGCAAATTATAACCAATGCTAAGTTATTGGTAGATTGGACTCGAGGAAGGAATATAATTATCTCTAGTGCTGCCCCAATTGCGAATGAATTTAGAGGGCCATATGATGTTGCAAACTTAATGTCATTGCTCGGTCTCTCCATGGAACGAGCTAAGGCGGCTATTTCAAGAAATTGTAGGACTCTTATATCTAATGCAGTGAGAAAAAAACACTATTATAAGGAAGCCATTAGAGTTGAAGTACTACCATCAGGTCAAGAAAGTGATGGGAACAAACCTTCGTCTAGTGACTCTTTTAATTGGGATCCCTTTAATTGGGATCCCATCTCTAGTGGTGAAGGTGATTTGCTTTTAGATGATTTGGCAAAGGCTTTCAGTAACTCCAGTACTAAAGCAACCAAAATGGTCAAAGCCATTGATTTTGCTTCGGTTATTGACAGCATGCCATCACTTGGATTTCAAGTTAACGATCTTATAGCTGGAACTAATGTGGTTGTGTCACAACGATTGGCTACTCAGAAAAACATCGTTTCTGCTCCCCAGTTAAATGTGCAATCAGTTGCAACTGATGGAGTACAAGAGCAATCTGTTTTATGTGATACTATGTTGGAGCGGCAAAGGTTCAAAAGCGAAAATCCTCAGAAATTATATTCATCTAGTGATACTACCAAAGCTGTTAACAATGTTATTCCAATTGAAGATCCTTCGATAACCACAAGAGCAGAACCAAATAGTCCAGATGAAACAGATGGGATTGCTACAGATATTCATGATGTGCAATCACAGAAGTCTGCGATTGCAAATGCTGTTAATGATGTTATGGAAATTGAAGTTCCTACAACCACTGGAGCAGAACCAACGAATTCAGCTGAATCAATGGGGATTACAAAAGAAATTCATGATGTGCAATCACTGAAGTCTGTGACTGCCAAAACTTTTAAAGATGCTATGGAAATTGAAGCTCCTACGACCACTGGAGTGGAAACAAAGAATCCGGATGGAATAGATGGGGTTACTACAGAAATTCTTAATGTTCTATCACAGAAGAGTATGACTAATTGCGAATTGAATGTTGTGCCATCTCAGGTTAATTTAACATATCATGCACTAGACATTGGGTTGAGTGTTGCTTGTAATCTTGATTCTGAACTTCAGGTTCCCACTAATTATCAGGACACTGATATTCCCGGTCCTCATAATGAAGAGGCTGATAGTATTAAAAATAATGATATACAAAGTGATTTAGTGGATGAAGTTCTAACAGGTAAAGAAAAAAAATCTTTGCCTCTGGATTCAGCATTGGATAAAAGTATTTTGGAAGTGGATGAATTGACGGAACCTGGAGATGATGTAGTTGTACTTGCAAATCAGGTTCCTGTTCTGGATTCTAGTGATGAGATGACAGCAACTGATGATTATTCAGTTGCAAATCATGAGACAGCAGAGGTAATAATGCATGAGCAAGAACATGGGAAAGCTGATGTTGAATTGAGCTATCCAGCCTTGGTTCAGTCTGAATCAGGGAAATCCAAGGCAAAAAGGAAGAAACCTCATCAGGTGACATTTCTTCCGCTCAAGCGATTGCTGCATGCTACACCTTTTAAGAAGGCTCGGAAAAGTAAAAGGAGACATAAGATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

730

Amino Acids

79.94

Weight (kDa)

5.33

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	5 - 241	2.4e-49	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59980 AT5G59980 AT5G59980 AT5G59980
fragaria_vesca	FvH4_3g34550 FvH4_3g34550
malus_domestica	MD11G1117900.v1.1
prunus_persica	Prupe.6G088000_v2.0.a1 Prupe.6G088000_v2.0.a1
pyrus_communis	pycom03g08460 pycom11g09880
rosa_chinensis	RchiOBHm_Chr4g0385531 RchiOBHm_Chr5g0062191
rosa_laevigata	RLG00000010219 RLG00000035541
rosa_multiflora	Rmu_co8004892.1_g000001 Rmu_sc0014282.1_g000010 Rmu_sc0018073.1_g000001 Rmu_ssc0000409.1_g000011
rosa_roxburghii	Rroxscaffold_1G00018520 Rroxscaffold_5G00333410
rosa_rugosa	Rorug05G0347200 Rorug07G0171200 Rorug07G0171200 Rorug07G0171300
rosa_samantha	Rh4AG006400 Rh4DG005200 Rh5AG407700 Rh5BG421400 Rh5CG445400 Rh5DG436400 Rh7AG313200 Rh7BG303900 Rh7CG331600 Rh7DG312000
rosa_wichuraiana	Rw5G038420 Rw7G026520 Rw7G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 768
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccBSI	CCGCTC	4 cut(s)	54, 493, 1162, 2122
AccII	CGCG	5 cut(s)	63, 147, 231, 252, 277
AccIII	TCCGGA	1 cut(s)	1543
AclWI	GGATC	5 cut(s)	848, 861, 863, 876, 1244
AcsI	RAATTY	4 cut(s)	638, 1411, 1443, 1572
AcuI	CTGAAG	2 cut(s)	1484, 1685
AcyI	GRCGYC	3 cut(s)	105, 132, 243
AfaI	GTAC	7 cut(s)	24, 121, 272, 792, 937, 1125, 1908
AfiI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 864, 1001
AflIII	ACRYGT	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	306, 1888
AleI	CACNNNNGTG	1 cut(s)	1526
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	689, 1979, 2170
AlwI	GGATC	5 cut(s)	848, 861, 863, 876, 1244
AlwNI	CAGNNNCTG	2 cut(s)	472, 1958
Ama87I	CYCGRG	2 cut(s)	86, 591
Aor13HI	TCCGGA	1 cut(s)	1543
AoxI	GGCC	4 cut(s)	81, 315, 396, 647
ApeKI	GCWGC	4 cut(s)	466, 482, 620, 2134
ApoI	RAATTY	4 cut(s)	638, 1411, 1443, 1572
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 656, 688
AspLEI	GCGC	4 cut(s)	65, 254, 279, 293
AspS9I	GGNCC	5 cut(s)	49, 82, 316, 647, 1739
AsuC2I	CCSGG	1 cut(s)	1737
AsuHPI	GGTGA	6 cut(s)	194, 199, 274, 896, 902, 2119
AvaI	CYCGRG	2 cut(s)	86, 591
AvaII	GGWCC	2 cut(s)	49, 1739
BamHI	GGATCC	2 cut(s)	853, 868
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	469, 478, 607, 2121
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	308, 1890
BcnI	CCSGG	1 cut(s)	1737
BcoDI	GTCTC	3 cut(s)	689, 1979, 2170
BfaI	CTAG	7 cut(s)	546, 615, 834, 879, 1206, 1658, 1938
BfmI	CTRYAG	2 cut(s)	1308, 1566
BisI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1163, 2135
BlsI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1164, 2136
BmcAI	AGTACT	2 cut(s)	792, 937
Bme1390I	CCNGG	3 cut(s)	308, 1737, 1890
Bme18I	GGWCC	2 cut(s)	49, 1739
BmeT110I	CYCGRG	2 cut(s)	86, 591
BmgT120I	GGNCC	5 cut(s)	49, 82, 316, 647, 1739
BmiI	GGNNCC	5 cut(s)	855, 870, 1707, 1887, 1923
BmrFI	CCNGG	3 cut(s)	308, 1737, 1890
BmrI	ACTGGG	1 cut(s)	1084
BmsI	GCATC	1 cut(s)	1483
BmuI	ACTGGG	1 cut(s)	1084
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	4 cut(s)	916, 1416, 1545, 1911
Bpu10I	CCTNAGC	3 cut(s)	17, 312, 702
BpuEI	CTTGAG	1 cut(s)	2108
BpuMI	CCSGG	1 cut(s)	1737
BsaHI	GRCGYC	3 cut(s)	105, 132, 243
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2052, 2079
BsaWI	WCCGGW	1 cut(s)	1543
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 194, 224, 1884, 1914
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 864, 1001
Bse1I	ACTGG	6 cut(s)	268, 379, 933, 1090, 1399, 1528
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	1543
BseBI	CCWGG	2 cut(s)	308, 1890
BseDI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2052, 2079
BseGI	GGATG	4 cut(s)	159, 1552, 1804, 1879
BseLI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 864, 1001
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	4 cut(s)	326, 1079, 1202, 1646
BseNI	ACTGG	6 cut(s)	268, 379, 933, 1090, 1399, 1528
BseRI	GAGGAG	5 cut(s)	158, 176, 189, 202, 227
BseXI	GCAGC	4 cut(s)	469, 478, 607, 2121
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	5 cut(s)	63, 147, 231, 252, 277
Bsh1285I	CGRYCG	2 cut(s)	145, 151
BshFI	GGCC	4 cut(s)	83, 317, 398, 649
BsiEI	CGRYCG	2 cut(s)	145, 151
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	86, 591
BsiSI	CCGG	5 cut(s)	47, 102, 327, 1544, 1737
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	6 cut(s)	46, 307, 313, 492, 864, 1001
BsmAI	GTCTC	3 cut(s)	689, 1979, 2170
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	83, 317, 398, 649
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	2 cut(s)	86, 591
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	1543
Bsp143I	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
Bsp19I	CCATGG	1 cut(s)	690
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	83, 317, 398, 649
BspCNI	CTCAG	4 cut(s)	325, 1078, 1201, 1645
BspEI	TCCGGA	1 cut(s)	1543
BspFNI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BspHI	TCATGA	3 cut(s)	1318, 1447, 1981
BspLI	GGNNCC	5 cut(s)	855, 870, 1707, 1887, 1923
BspPI	GGATC	5 cut(s)	848, 861, 863, 876, 1244
BspTNI	GGTCTC	1 cut(s)	689
BsrBI	CCGCTC	4 cut(s)	54, 493, 1162, 2122
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	6 cut(s)	268, 379, 933, 1090, 1399, 1528
BssECI	CCNNGG	6 cut(s)	78, 238, 306, 690, 2052, 2079
BssMI	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
BssNI	GRCGYC	3 cut(s)	105, 132, 243
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	4 cut(s)	78, 690, 2052, 2079
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	308, 1890
Bst4CI	ACNGT	3 cut(s)	119, 152, 286
Bst6I	CTCTTC	2 cut(s)	1589, 1746
BstACI	GRCGYC	3 cut(s)	105, 132, 243
BstC8I	GCNNGC	2 cut(s)	992, 2139
BstDEI	CTNAG	7 cut(s)	17, 312, 570, 702, 1065, 1188, 1632
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	159, 1552, 1804, 1879
BstFNI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BstHHI	GCGC	4 cut(s)	65, 254, 279, 293
BstKTI	GATC	8 cut(s)	126, 145, 394, 513, 856, 871, 1021, 1252
BstMAI	GTCTC	3 cut(s)	689, 1979, 2170
BstMBI	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
BstMCI	CGRYCG	2 cut(s)	145, 151
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2134
BstNI	CCWGG	2 cut(s)	308, 1890
BstNSI	RCATGY	3 cut(s)	519, 994, 2141
BstSCI	CCNGG	3 cut(s)	306, 1735, 1888
BstSFI	CTRYAG	2 cut(s)	1308, 1566
BstUI	CGCG	5 cut(s)	63, 147, 231, 252, 277
BstV1I	GCAGC	4 cut(s)	469, 478, 607, 2121
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	3 cut(s)	853, 868, 1249
BstXI	CCANNNNNNTGG	1 cut(s)	1528
BstYI	RGATCY	3 cut(s)	853, 868, 1249
BsuRI	GGCC	4 cut(s)	83, 317, 398, 649
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	4 cut(s)	159, 1552, 1804, 1879
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	5 cut(s)	753, 1392, 1460, 1521, 1725
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	992, 2139
CaiI	CAGNNNCTG	2 cut(s)	472, 1958
CciI	TCATGA	3 cut(s)	1318, 1447, 1981
CfoI	GCGC	4 cut(s)	65, 254, 279, 293
Cfr13I	GGNCC	5 cut(s)	49, 82, 316, 647, 1739
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	3 cut(s)	94, 121, 232
Csp6I	GTAC	7 cut(s)	23, 120, 271, 791, 936, 1124, 1907
CspI	CGGWCCG	1 cut(s)	49
CviQI	GTAC	7 cut(s)	23, 120, 271, 791, 936, 1124, 1907
DdeI	CTNAG	7 cut(s)	17, 312, 570, 702, 1065, 1188, 1632
DpnI	GATC	8 cut(s)	125, 144, 393, 512, 855, 870, 1020, 1251
DpnII	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
DraI	TTTAAA	1 cut(s)	1489
Eam1104I	CTCTTC	2 cut(s)	1589, 1746
EarI	CTCTTC	2 cut(s)	1589, 1746
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	78, 690, 2052, 2079
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	49, 1739
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	1484, 1685
Eco88I	CYCGRG	2 cut(s)	86, 591
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	82, 316
EcoRI	GAATTC	1 cut(s)	1411
EcoRII	CCWGG	2 cut(s)	306, 1888
EcoT14I	CCWWGG	4 cut(s)	78, 690, 2052, 2079
EcoT22I	ATGCAT	1 cut(s)	2007
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	78, 690, 2052, 2079
FaqI	GGGAC	1 cut(s)	230
FauI	CCCGC	2 cut(s)	48, 68
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1163, 2135
FokI	GGATG	4 cut(s)	146, 1559, 1811, 1886
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1163, 2135
FspBI	CTAG	7 cut(s)	546, 615, 834, 879, 1206, 1658, 1938
GlaI	GCGC	4 cut(s)	64, 253, 278, 292
GluI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1163, 2135
GsuI	CTGGAG	4 cut(s)	916, 1416, 1545, 1911
HaeIII	GGCC	4 cut(s)	83, 317, 398, 649
HapII	CCGG	5 cut(s)	47, 102, 327, 1544, 1737
HgaI	GACGC	3 cut(s)	94, 121, 232
HhaI	GCGC	4 cut(s)	65, 254, 279, 293
Hin1I	GRCGYC	3 cut(s)	105, 132, 243
Hin6I	GCGC	4 cut(s)	63, 252, 277, 291
HinP1I	GCGC	4 cut(s)	63, 252, 277, 291
HincII	GTYRAC	2 cut(s)	1015, 1228
HindII	GTYRAC	2 cut(s)	1015, 1228
HinfI	GANTC	9 cut(s)	589, 730, 839, 1421, 1540, 1691, 1841, 1934, 2066
HpaI	GTTAAC	2 cut(s)	1015, 1228
HpaII	CCGG	5 cut(s)	47, 102, 327, 1544, 1737
HphI	GGTGA	6 cut(s)	194, 199, 274, 896, 902, 2119
Hpy166II	GTNNAC	3 cut(s)	273, 1015, 1228
Hpy188I	TCNGA	7 cut(s)	142, 442, 1068, 1191, 1696, 2065, 2163
Hpy8I	GTNNAC	3 cut(s)	273, 1015, 1228
Hpy99I	CGWCG	2 cut(s)	110, 221
HpyAV	CCTTC	8 cut(s)	189, 490, 543, 591, 837, 881, 1263, 2149
HpyCH4III	ACNGT	3 cut(s)	119, 152, 286
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2134
HpyF3I	CTNAG	7 cut(s)	17, 312, 570, 702, 1065, 1188, 1632
Hsp92I	GRCGYC	3 cut(s)	105, 132, 243
HspAI	GCGC	4 cut(s)	63, 252, 277, 291
Kpn2I	TCCGGA	1 cut(s)	1543
KspAI	GTTAAC	2 cut(s)	1015, 1228
Kzo9I	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
LmnI	GCTCC	5 cut(s)	161, 1090, 1159, 1397, 1516
Lsp1109I	GCAGC	4 cut(s)	469, 478, 607, 2121
LweI	GCATC	1 cut(s)	1483
MaeI	CTAG	7 cut(s)	546, 615, 834, 879, 1206, 1658, 1938
MaeIII	GTNAC	8 cut(s)	73, 447, 836, 926, 1047, 1471, 1561, 2107
MalI	GATC	8 cut(s)	125, 144, 393, 512, 855, 870, 1020, 1251
MbiI	CCGCTC	4 cut(s)	54, 493, 1162, 2122
MboI	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
MboII	GAAGA	6 cut(s)	355, 1259, 1606, 1763, 2104, 2108
MfeI	CAATTG	2 cut(s)	627, 1242
MflI	RGATCY	3 cut(s)	853, 868, 1249
MhlI	GDGCHC	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	583, 724, 833
MmeI	TCCRAC	1 cut(s)	1137
Mph1103I	ATGCAT	1 cut(s)	2007
MroI	TCCGGA	1 cut(s)	1543
MslI	CAYNNNNRTG	1 cut(s)	1526
MspA1I	CMGCKG	1 cut(s)	1418
MspI	CCGG	5 cut(s)	47, 102, 327, 1544, 1737
MspR9I	CCNGG	3 cut(s)	308, 1737, 1890
MunI	CAATTG	2 cut(s)	627, 1242
MvaI	CCWGG	2 cut(s)	308, 1890
MvnI	CGCG	5 cut(s)	63, 147, 231, 252, 277
MwoI	GCNNNNNNNGC	8 cut(s)	60, 102, 153, 228, 249, 629, 707, 2134
NciI	CCSGG	1 cut(s)	1737
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
NlaIV	GGNNCC	5 cut(s)	855, 870, 1707, 1887, 1923
NmeAIII	GCCGAG	2 cut(s)	72, 219
NmuCI	GTSAC	5 cut(s)	73, 836, 1047, 1471, 2107
NruI	TCGCGA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	2007
NspI	RCATGY	3 cut(s)	519, 994, 2141
OliI	CACNNNNGTG	1 cut(s)	1526
PaeI	GCATGC	2 cut(s)	994, 2141
PaeR7I	CTCGAG	2 cut(s)	86, 591
PagI	TCATGA	3 cut(s)	1318, 1447, 1981
PceI	AGGCCT	1 cut(s)	398
PciI	ACATGT	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	6 cut(s)	1421, 1540, 1691, 1841, 1934, 2066
Pfl23II	CGTACG	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	7 cut(s)	45, 468, 484, 622, 709, 1164, 2136
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	583, 724, 833
PpsI	GAGTC	3 cut(s)	583, 724, 833
PscI	ACATGT	1 cut(s)	515
PsiI	TTATAA	2 cut(s)	560, 768
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	306, 1888
PspGI	CCWGG	2 cut(s)	306, 1888
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	5 cut(s)	855, 870, 1707, 1887, 1923
PspPI	GGNCC	5 cut(s)	49, 82, 316, 647, 1739
PspXI	VCTCGAGB	2 cut(s)	86, 591
PstNI	CAGNNNCTG	2 cut(s)	472, 1958
PsuI	RGATCY	3 cut(s)	853, 868, 1249
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	1418
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	7 cut(s)	24, 121, 272, 792, 937, 1125, 1908
RsaNI	GTAC	7 cut(s)	23, 120, 271, 791, 936, 1124, 1907
RseI	CAYNNNNRTG	1 cut(s)	1526
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	7 cut(s)	44, 467, 483, 621, 708, 1163, 2135
Sau3AI	GATC	8 cut(s)	123, 142, 391, 510, 853, 868, 1018, 1249
Sau96I	GGNCC	5 cut(s)	49, 82, 316, 647, 1739
ScaI	AGTACT	2 cut(s)	792, 937
SchI	GAGTC	3 cut(s)	583, 724, 833
ScrFI	CCNGG	3 cut(s)	308, 1737, 1890
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	1483
SfcI	CTRYAG	2 cut(s)	1308, 1566
Sfr274I	CTCGAG	2 cut(s)	86, 591
SinI	GGWCC	2 cut(s)	49, 1739
SlaI	CTCGAG	2 cut(s)	86, 591
SmiMI	CAYNNNNRTG	1 cut(s)	1526
SmlI	CTYRAG	3 cut(s)	86, 591, 2123
SmoI	CTYRAG	3 cut(s)	86, 591, 2123
SphI	GCATGC	2 cut(s)	994, 2141
SseBI	AGGCCT	1 cut(s)	398
SspMI	CTAG	7 cut(s)	546, 615, 834, 879, 1206, 1658, 1938
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	306, 1735, 1888
StyI	CCWWGG	4 cut(s)	78, 690, 2052, 2079
TaaI	ACNGT	3 cut(s)	119, 152, 286
TaqI	TCGA	6 cut(s)	12, 87, 390, 457, 592, 1256
TaqII	GACCGA	1 cut(s)	671
TatI	WGTACW	5 cut(s)	270, 790, 935, 1123, 1906
TauI	GCSGC	3 cut(s)	46, 710, 1165
TfiI	GAWTC	6 cut(s)	1421, 1540, 1691, 1841, 1934, 2066
TscAI	CASTG	5 cut(s)	753, 1399, 1467, 1528, 1732
TseFI	GTSAC	5 cut(s)	73, 836, 1047, 1471, 2107
TseI	GCWGC	4 cut(s)	466, 482, 620, 2134
Tsp45I	GTSAC	5 cut(s)	73, 836, 1047, 1471, 2107
TspDTI	ATGAA	9 cut(s)	389, 651, 1191, 1305, 1307, 1436, 1764, 1815, 1890
TspGWI	ACGGA	2 cut(s)	205, 1898
TspRI	CASTG	5 cut(s)	753, 1399, 1467, 1528, 1732
Van91I	CCANNNNNTGG	1 cut(s)	1001
VpaK11BI	GGWCC	2 cut(s)	49, 1739
XapI	RAATTY	4 cut(s)	638, 1411, 1443, 1572
XceI	RCATGY	3 cut(s)	519, 994, 2141
XhoI	CTCGAG	2 cut(s)	86, 591
XspI	CTAG	7 cut(s)	546, 615, 834, 879, 1206, 1658, 1938
ZrmI	AGTACT	2 cut(s)	792, 937
Zsp2I	ATGCAT	1 cut(s)	2007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.