RchiOBHm_Chr4g0432471

Multidrug Resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004866
Physical Location & Seq
Forward (+)
56654715 .. 56654945
231 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGGTTTACGTTGGTCAATTTGGAGTTCAATTGTCTGGAAGGCAAAAGCAAAGGGTTGCTATAGCAAGGCCTCTCGCTAGAAATCCCATAATCCTTCTGGTTGACGAAGCCACAAGCGCTTTCAATGCACAATCCAAAAGAGTAGTACGAGAATCCCAAGACGTGGCTTCAATAGGACGTACACCTCCATTGTTGCCCATCGGCTTTCCACAATATGCAAAGCTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

76

Amino Acids

8.32

Weight (kDa)

10.92

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 8 - 39 2.9e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AfaI GTAC 2 cut(s) 147, 181
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 29, 124, 171
AjiI CACGTC 1 cut(s) 163
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 119
BccI CCATC 1 cut(s) 206
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 215
BshFI GGCC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 163
BsnI GGCC 1 cut(s) 70
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstSFI CTRYAG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 70
BtrI CACGTC 1 cut(s) 163
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 146, 180
CviJI RGCY 5 cut(s) 70, 110, 167, 204, 223
CviKI_1 RGCY 5 cut(s) 70, 110, 167, 204, 223
CviQI GTAC 2 cut(s) 146, 180
DdeI CTNAG 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 118
FaiI YATR 3 cut(s) 62, 89, 216
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 70
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 7, 103, 182
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 3 cut(s) 7, 103, 182
HpyAV CCTTC 2 cut(s) 33, 104
HpyCH4IV ACGT 3 cut(s) 9, 162, 178
HpyCH4V TGCA 2 cut(s) 128, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 3 cut(s) 9, 162, 178
HspAI GCGC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 21, 83
MaeI CTAG 1 cut(s) 78
MaeII ACGT 3 cut(s) 9, 162, 178
MfeI CAATTG 1 cut(s) 29
MluCI AATT 2 cut(s) 17, 29
MnlI CCTC 2 cut(s) 81, 195
MunI CAATTG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
PceI AGGCCT 1 cut(s) 70
PfeI GAWTC 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 163
RsaI GTAC 2 cut(s) 147, 181
RsaNI GTAC 2 cut(s) 146, 180
SetI ASST 5 cut(s) 12, 165, 181, 187, 225
SfcI CTRYAG 1 cut(s) 60
SgeI CNNG 9 cut(s) 48, 78, 86, 90, 110, 126, 161, 170, 175
Sse9I AATT 2 cut(s) 17, 29
SseBI AGGCCT 1 cut(s) 70
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 70
TaiI ACGT 3 cut(s) 12, 165, 181
TasI AATT 2 cut(s) 17, 29
TfiI GAWTC 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.