RchiOBHm_Chr3g0461451

Solute carrier family 40 member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
9504843 .. 9507761
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1413 bp
ATGTGGGAATTCTCTGTTGGTTTATACATGATAAATGTATGGCCAGACTCTCTACTCTTTGCTGCTATATATGGTGCGGTGGAATCAGCTTCTACTGCGCTTTTTGGACCTTTGGTCGGACGGTGGGTGGATAAATTCTCATATGTAAAGATTCTTCGAGTTTGGTTAGTAACACAAAATCTCTCTTTTATGATTGCTGGAGCCACTGTGATGGCGTTACTGATCTACCCAGATCTAAAGCTCACAAGTTTCTATGCATTTGTTTTACTTATCATATTAACCAACATCTCTGGTGCTCTTGGAGTTCTCTCCACTCTTGCTGGTACCATCTTAGTTGAAAGAGACTGGGTTGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTAACAAACATGAATTCGGTCATTAGGCGTATTGATCTTTTCTCCAAACTTTGTGCTCCGGTGGTAACCGGCTTCATCATCAGCTTTGTATCACTAAAAGCTTCTGCTTTAACTTTAGTACTCTGGAATACCATATCTGTTTGGCTAGAATACTGGCTATTCATTTCTGTGTATAATGGGATTCCGGCTTTAGGCGAAAGCAGCCAAAGGAAGATATCAAGACCTTCTCAAAGTGATCTTGAAGGCACTGGCACATCTACTTCTGAAGGGAGAAGTAGCTTGCTTTCTAAAGATGAAAATGATTCAGAATTTGCTGAGGAAAGCTGGATAACGGGGGTTATTAAAATGGTGTCAAGGATCCCTTATGTTAGAGCTTGGAGCGTGTATTTGCAGCAAGATGTTGTGCTTCCTGGAGTATCTCTGGCTTTGTTATATTTCACTGTACTCAGCTTTGGAACATTGATGACAGCTACCTTGGAATGGGAAGGCATACCTGCATACACCATTGGGATAGCTCGTGGAATAAGCGCTGCAATTGGAATTTCTGCAACAGTTGTTTATCCCGTCTTGCAAGCTCATATCTTAACACTTAGAACCGGACTCTGGTCTATCTGGTGTCAGTGGACCTTCCTCATATTATGTGTTGCTTCAATATGGATCCATAACAGCCTTTGGTCAGCTTATATGCTAATGGCAGGAGTGGCTACTTCTCGGCTTGGATTGTGGATGTTTGATTTGGCTGTCATCCAACAAATGCAGGATCAAGTTCCTGAATCAGATCGTTGTGTAGTGGGAGGTGTTCAAAACTCCCTTCAGTCCAGCATGGATTTGATGGGCTATGTCATGGGAATAATCATATCTAATCCACAGGAATTCTGGAAGTTGATTTTGGTCTCGTTTGCCATGGCAACGTTGGCAGCATTGCTCTATACCCTGCACGTTTACCGCGTACGAAAGCACCTCCTTCACTTTGAGAAATTAGCCTTCGTTCTGAAATGCTTCACCAGTTCACAATCTGAAAATTCATAA

Protein Analysis

470

Amino Acids

52.21

Weight (kDa)

5.91

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 1 - 429 5.6e-153 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 886
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 1 cut(s) 1332
AciI CCGC 2 cut(s) 77, 1330
AclI AACGTT 1 cut(s) 1295
AclWI GGATC 5 cut(s) 736, 749, 1036, 1049, 1152
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 7 cut(s) 8, 134, 397, 692, 924, 1256, 1405
AcuI CTGAAG 2 cut(s) 669, 1181
AfaI GTAC 5 cut(s) 325, 384, 504, 828, 1335
AfeI AGCGCT 1 cut(s) 913
AfiI CCNNNNNNNGG 4 cut(s) 116, 575, 864, 987
AgsI TTSAA 4 cut(s) 338, 626, 1035, 1187
AhdI GACNNNNNGTC 1 cut(s) 113
AjnI CCWGG 1 cut(s) 793
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 1256, 1288
Alw21I GWGCWC 2 cut(s) 298, 442
Alw26I GTCTC 2 cut(s) 336, 1282
AlwI GGATC 5 cut(s) 736, 749, 1036, 1049, 1152
Aor51HI AGCGCT 1 cut(s) 913
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 5 cut(s) 62, 585, 775, 914, 1301
ApoI RAATTY 7 cut(s) 8, 134, 397, 692, 924, 1256, 1405
Asp700I GAANNNNTTC 1 cut(s) 1382
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 100, 914
AspS9I GGNCC 2 cut(s) 107, 1008
AsuHPI GGTGA 2 cut(s) 367, 1378
AvaII GGWCC 2 cut(s) 107, 1008
BalI TGGCCA 1 cut(s) 43
BamHI GGATCC 2 cut(s) 741, 1041
BanI GGYRCC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BauI CACGAG 1 cut(s) 900
Bbv12I GWGCWC 2 cut(s) 298, 442
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 5 cut(s) 49, 597, 787, 901, 1313
BccI CCATC 3 cut(s) 205, 335, 1210
BciT130I CCWGG 1 cut(s) 795
BcoDI GTCTC 2 cut(s) 336, 1282
BfaI CTAG 1 cut(s) 530
BfoI RGCGCY 1 cut(s) 915
BfuAI ACCTGC 1 cut(s) 886
BglII AGATCT 1 cut(s) 232
BisI GCNGC 5 cut(s) 63, 586, 776, 915, 1302
BlsI GCNGC 5 cut(s) 64, 587, 777, 916, 1303
BmcAI AGTACT 2 cut(s) 384, 504
Bme1390I CCNGG 1 cut(s) 795
Bme18I GGWCC 2 cut(s) 107, 1008
BmeRI GACNNNNNGTC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 107, 1008
BmiI GGNNCC 4 cut(s) 202, 325, 743, 1043
BmrFI CCNGG 1 cut(s) 795
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 988
BpmI CTGGAG 3 cut(s) 219, 360, 816
Bpu10I CCTNAGC 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 1282
BsaJI CCNNGG 2 cut(s) 858, 1287
BsaWI WCCGGW 2 cut(s) 442, 980
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 575, 864, 987
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 4 cut(s) 350, 542, 637, 1389
Bse3DI GCAATG 1 cut(s) 1304
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 858, 1287
BseGI GGATG 2 cut(s) 1116, 1128
BseLI CCNNNNNNNGG 4 cut(s) 116, 575, 864, 987
BseMI GCAATG 1 cut(s) 1304
BseMII CTCAG 2 cut(s) 690, 844
BseNI ACTGG 4 cut(s) 350, 542, 637, 1389
BseXI GCAGC 5 cut(s) 49, 597, 787, 901, 1313
BsgI GTGCAG 1 cut(s) 1304
Bsh1236I CGCG 1 cut(s) 1332
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 2 cut(s) 298, 442
BsiSI CCGG 4 cut(s) 443, 453, 569, 981
BsiWI CGTACG 1 cut(s) 1333
BslI CCNNNNNNNGG 4 cut(s) 116, 575, 864, 987
BsmAI GTCTC 2 cut(s) 336, 1282
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 1282
Bsp1286I GDGCHC 2 cut(s) 298, 442
Bsp143I GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
Bsp19I CCATGG 1 cut(s) 1287
BspACI CCGC 2 cut(s) 77, 1330
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 691, 843
BspFNI CGCG 1 cut(s) 1332
BspLI GGNNCC 4 cut(s) 202, 325, 743, 1043
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 5 cut(s) 736, 749, 1036, 1049, 1152
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 1282
BsrDI GCAATG 1 cut(s) 1304
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 4 cut(s) 350, 542, 637, 1389
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 2 cut(s) 858, 1287
BssMI GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
BssSI CACGAG 1 cut(s) 900
BssT1I CCWWGG 2 cut(s) 858, 1287
Bst2BI CACGAG 1 cut(s) 900
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 4 cut(s) 123, 208, 826, 937
BstC8I GCNNGC 2 cut(s) 665, 957
BstDEI CTNAG 4 cut(s) 331, 699, 830, 974
BstDSI CCRYGG 1 cut(s) 1287
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 2 cut(s) 1116, 1128
BstFNI CGCG 1 cut(s) 1332
BstH2I RGCGCY 1 cut(s) 915
BstHHI GCGC 2 cut(s) 100, 914
BstKTI GATC 8 cut(s) 225, 235, 421, 622, 744, 1044, 1147, 1165
BstMAI GTCTC 2 cut(s) 336, 1282
BstMBI GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
BstMWI GCNNNNNNNGC 4 cut(s) 95, 585, 1085, 1298
BstNI CCWGG 1 cut(s) 795
BstPAI GACNNNNGTC 1 cut(s) 988
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 793
BstUI CGCG 1 cut(s) 1332
BstV1I GCAGC 5 cut(s) 49, 597, 787, 901, 1313
BstX2I RGATCY 3 cut(s) 232, 741, 1041
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 3 cut(s) 232, 741, 1041
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 1287
BtsCI GGATG 2 cut(s) 1116, 1128
BtsIMutI CAGTG 4 cut(s) 204, 630, 822, 1010
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 2 cut(s) 665, 957
CfoI GCGC 2 cut(s) 100, 914
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 2 cut(s) 107, 1008
Csp6I GTAC 5 cut(s) 324, 383, 503, 827, 1334
CviAII CATG 5 cut(s) 28, 394, 1207, 1228, 1288
CviQI GTAC 5 cut(s) 324, 383, 503, 827, 1334
DdeI CTNAG 4 cut(s) 331, 699, 830, 974
DpnI GATC 8 cut(s) 224, 234, 420, 621, 743, 1043, 1146, 1164
DpnII GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
DriI GACNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 858, 1287
Eco31I GGTCTC 1 cut(s) 1282
Eco32I GATATC 2 cut(s) 360, 600
Eco47I GGWCC 2 cut(s) 107, 1008
Eco47III AGCGCT 1 cut(s) 913
Eco57I CTGAAG 2 cut(s) 669, 1181
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRI GAATTC 3 cut(s) 8, 397, 1256
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 2 cut(s) 360, 600
EcoT14I CCWWGG 2 cut(s) 858, 1287
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 2 cut(s) 858, 1287
FaeI CATG 5 cut(s) 31, 397, 1210, 1231, 1291
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FatI CATG 5 cut(s) 27, 393, 1206, 1227, 1287
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 63, 586, 776, 915, 1302
FokI GGATG 2 cut(s) 1115, 1123
Fsp4HI GCNGC 5 cut(s) 63, 586, 776, 915, 1302
FspBI CTAG 1 cut(s) 530
GlaI GCGC 2 cut(s) 99, 913
GluI GCNGC 5 cut(s) 63, 586, 776, 915, 1302
GsuI CTGGAG 3 cut(s) 219, 360, 816
HaeII RGCGCY 1 cut(s) 915
HaeIII GGCC 1 cut(s) 43
HapII CCGG 4 cut(s) 443, 453, 569, 981
HhaI GCGC 2 cut(s) 100, 914
Hin1II CATG 5 cut(s) 31, 397, 1210, 1231, 1291
Hin6I GCGC 2 cut(s) 98, 912
HinP1I GCGC 2 cut(s) 98, 912
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 7 cut(s) 47, 83, 151, 565, 686, 984, 1157
HpaII CCGG 4 cut(s) 443, 453, 569, 981
HphI GGTGA 2 cut(s) 367, 1378
Hpy166II GTNNAC 3 cut(s) 1008, 1327, 1394
Hpy188I TCNGA 7 cut(s) 119, 364, 649, 691, 1162, 1377, 1402
Hpy188III TCNNGA 6 cut(s) 377, 508, 603, 623, 1154, 1261
Hpy8I GTNNAC 3 cut(s) 1008, 1327, 1394
HpyAV CCTTC 9 cut(s) 359, 618, 620, 644, 863, 1021, 1205, 1358, 1378
HpyCH4III ACNGT 4 cut(s) 123, 208, 826, 937
HpyCH4IV ACGT 2 cut(s) 1295, 1323
HpyCH4V TGCA 8 cut(s) 257, 775, 881, 917, 932, 955, 1141, 1321
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 585, 1085, 1298
HpyF3I CTNAG 4 cut(s) 331, 699, 830, 974
HpySE526I ACGT 2 cut(s) 1295, 1323
Hsp92II CATG 5 cut(s) 31, 397, 1210, 1231, 1291
HspAI GCGC 2 cut(s) 98, 912
KpnI GGTACC 1 cut(s) 327
Kzo9I GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
LmnI GCTCC 3 cut(s) 200, 445, 762
Lsp1109I GCAGC 5 cut(s) 49, 597, 787, 901, 1313
MaeI CTAG 1 cut(s) 530
MaeII ACGT 2 cut(s) 1295, 1323
MaeIII GTNAC 3 cut(s) 169, 216, 448
MalI GATC 8 cut(s) 224, 234, 420, 621, 743, 1043, 1146, 1164
MboI GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
MboII GAAGA 2 cut(s) 146, 607
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 3 cut(s) 232, 741, 1041
MhlI GDGCHC 2 cut(s) 298, 442
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 9 cut(s) 8, 134, 397, 692, 918, 924, 1256, 1361, 1405
MluNI TGGCCA 1 cut(s) 43
MlyI GAGTC 2 cut(s) 41, 978
MmeI TCCRAC 2 cut(s) 97, 1156
MnlI CCTC 4 cut(s) 694, 1025, 1172, 1355
Mox20I TGGCCA 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 1382
MscI TGGCCA 1 cut(s) 43
MseI TTAA 4 cut(s) 278, 494, 726, 968
MslI CAYNNNNRTG 2 cut(s) 209, 551
Msp20I TGGCCA 1 cut(s) 43
MspI CCGG 4 cut(s) 443, 453, 569, 981
MspR9I CCNGG 1 cut(s) 795
MunI CAATTG 1 cut(s) 918
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 795
MvnI CGCG 1 cut(s) 1332
MwoI GCNNNNNNNGC 4 cut(s) 95, 585, 1085, 1298
NcoI CCATGG 1 cut(s) 1287
NdeI CATATG 1 cut(s) 142
NdeII GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
NlaIII CATG 5 cut(s) 31, 397, 1210, 1231, 1291
NlaIV GGNNCC 4 cut(s) 202, 325, 743, 1043
NmeAIII GCCGAG 1 cut(s) 1075
NsiI ATGCAT 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 1329
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 1382
PfeI GAWTC 5 cut(s) 83, 151, 565, 686, 1157
Pfl23II CGTACG 1 cut(s) 1333
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 5 cut(s) 64, 587, 777, 916, 1303
PleI GAGTC 2 cut(s) 41, 978
PpsI GAGTC 2 cut(s) 41, 978
PshAI GACNNNNGTC 1 cut(s) 988
Psp1406I AACGTT 1 cut(s) 1295
Psp6I CCWGG 1 cut(s) 793
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 793
PspLI CGTACG 1 cut(s) 1333
PspN4I GGNNCC 4 cut(s) 202, 325, 743, 1043
PspPI GGNCC 2 cut(s) 107, 1008
PsuI RGATCY 3 cut(s) 232, 741, 1041
RsaI GTAC 5 cut(s) 325, 384, 504, 828, 1335
RsaNI GTAC 5 cut(s) 324, 383, 503, 827, 1334
RseI CAYNNNNRTG 2 cut(s) 209, 551
SaqAI TTAA 4 cut(s) 278, 494, 726, 968
SatI GCNGC 5 cut(s) 63, 586, 776, 915, 1302
Sau3AI GATC 8 cut(s) 222, 232, 418, 619, 741, 1041, 1144, 1162
Sau96I GGNCC 2 cut(s) 107, 1008
ScaI AGTACT 2 cut(s) 384, 504
SchI GAGTC 2 cut(s) 41, 978
ScrFI CCNGG 1 cut(s) 795
SduI GDGCHC 2 cut(s) 298, 442
SinI GGWCC 2 cut(s) 107, 1008
SmiMI CAYNNNNRTG 2 cut(s) 209, 551
Sse9I AATT 9 cut(s) 8, 134, 397, 692, 918, 924, 1256, 1361, 1405
SsiI CCGC 2 cut(s) 77, 1330
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 793
StyI CCWWGG 2 cut(s) 858, 1287
TaaI ACNGT 4 cut(s) 123, 208, 826, 937
TaiI ACGT 2 cut(s) 1298, 1326
TaqI TCGA 1 cut(s) 157
TaqII GACCGA 1 cut(s) 391
TasI AATT 9 cut(s) 8, 134, 397, 692, 918, 924, 1256, 1361, 1405
TatI WGTACW 3 cut(s) 382, 502, 826
TfiI GAWTC 5 cut(s) 83, 151, 565, 686, 1157
Tru1I TTAA 4 cut(s) 278, 494, 726, 968
Tru9I TTAA 4 cut(s) 278, 494, 726, 968
TscAI CASTG 4 cut(s) 211, 637, 829, 1010
TseI GCWGC 5 cut(s) 62, 585, 775, 914, 1301
TspDTI ATGAA 5 cut(s) 410, 448, 535, 693, 1398
TspRI CASTG 4 cut(s) 211, 637, 829, 1010
VpaK11BI GGWCC 2 cut(s) 107, 1008
XapI RAATTY 7 cut(s) 8, 134, 397, 692, 924, 1256, 1405
XcmI CCANNNNNNNNNTGG 2 cut(s) 1257, 1294
XmnI GAANNNNTTC 1 cut(s) 1382
XspI CTAG 1 cut(s) 530
ZrmI AGTACT 2 cut(s) 384, 504
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.