Rroxscaffold_6G00418310

Solute carrier family 40 member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
39849935 .. 39852084
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418310.1

Sequence Viewer

Length: 1224 bp
ATGATTGCCGGAGCCACCGTGATGGCGTTACTGATCTACCCAGATCTAAAGCTCACAAATTTCAATGCATTTGTTTTACTTATCATATTAACCAACATCTCTGGAGCTCTTGGAGTTCTCTCCACTCTTGCTGGTACCATCTTAGTTGAAAGAGACTGGGTTGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTAACAAACATGAATTCGGTCGTTAGGCGTATTGATCTTTTCTCCAAGCTATGTGCTCCTGTGGTAACCGGCTTCATCATCAGCTTTGTATCACTAAAAGCTTCTGCTTTAACTTTAGCACTCTGGAATACTATATCTGTTTGGCTGGAATACTGGCTATTCATTTCTGTGTATAATGGGATTCCAGCTTTAGGCGAAAGCAGCCAAAGGAAGATATCAAGACCTTCTCAGAGTGATCTTGAAGGCACTGGCACATCTACCTCTCAAGAGAGGAGCAGCTTGCTTTTTAAAGATGAAAATGATCCAGAATTCGCAGAGGAAAGCTGGATTACTGGGCTTATTAAAACGGTATCAAGGATCCCTTATGTTAGTGCTTGGAGTGTGTATTTGAAGCAAGAAGTTGTACTCCCTGGAGTGTCTCTGGCTTTGTTATATTTCACTGTACTCAGCTTTGGAACATTGATGACAGCTACCTTGGAATGGGAAGGCATACCTGCATACACCATAGGGATAGCTCGTGGAATAAGCGCTGCAATTGGAATTACTGCAACAATTGTTTATCCCATCTTGCAATCTCATATCTTAACACTTAGAACCGGACTCTGGTCTATCTGGTCTCAGTGGACCTTCCTCATATTATGTGTTGCTTCAATATGGATCCATAAGAGAATTTGGTCAGCATATATGCTAATGGCAGGAGTGGCTACTTCTCGGCTTGGGTTGTGGATGTTTGATTTGGCTGTCATCCAACAAATGCAGGATCAAGTTCCGGAATCAGATCGTTGTGTAGTGGGAGGTGTTCAAAACTCCCTTCAGTCCAGCATGGATTTGATGGGCTATGTCATGGGAATAATCATATCTAATCCACAGGAATTCTGGAAGTTGACTTTGGTCTCGTTTGCCGTGGCAACATTGGCTGCATTGCTCTATACCCTGCACCTCTACCGCGTCCGAAAGCACCTCCTTCACTTGGAGAAATTAACCGCCTTTCTGAAATGCTTCACCAGTTCACAATCTGAAAATTCATAA

Protein Analysis

407

Amino Acids

45.09

Weight (kDa)

6.32

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 2 - 366 1e-124 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 697
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 1143
AccIII TCCGGA 1 cut(s) 964
AciI CCGC 2 cut(s) 1141, 1179
AclWI GGATC 6 cut(s) 491, 547, 560, 847, 860, 963
AcsI RAATTY 6 cut(s) 58, 208, 503, 864, 1067, 1216
AcuI CTGAAG 1 cut(s) 992
AfaI GTAC 4 cut(s) 136, 195, 600, 639
AfeI AGCGCT 1 cut(s) 724
AfiI CCNNNNNNNGG 4 cut(s) 386, 675, 798, 1165
AgsI TTSAA 6 cut(s) 64, 149, 437, 586, 846, 998
AjnI CCWGG 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
Alw21I GWGCWC 2 cut(s) 109, 253
Alw26I GTCTC 4 cut(s) 147, 618, 816, 1093
AlwI GGATC 6 cut(s) 491, 547, 560, 847, 860, 963
Aor13HI TCCGGA 1 cut(s) 964
Aor51HI AGCGCT 1 cut(s) 724
ApeKI GCWGC 4 cut(s) 396, 471, 725, 1112
ApoI RAATTY 6 cut(s) 58, 208, 503, 864, 1067, 1216
Asp700I GAANNNNTTC 1 cut(s) 1193
Asp718I GGTACC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 1 cut(s) 819
AsuHPI GGTGA 2 cut(s) 178, 1189
AvaII GGWCC 1 cut(s) 819
BamHI GGATCC 2 cut(s) 552, 852
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 109, 253
BbvI GCAGC 4 cut(s) 408, 483, 712, 1099
BccI CCATC 4 cut(s) 16, 146, 767, 1021
BceAI ACGGC 1 cut(s) 1082
BciT130I CCWGG 1 cut(s) 606
BcoDI GTCTC 4 cut(s) 147, 618, 816, 1093
BfoI RGCGCY 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 697
BglII AGATCT 1 cut(s) 43
BisI GCNGC 4 cut(s) 397, 472, 726, 1113
BlsI GCNGC 4 cut(s) 398, 473, 727, 1114
BmcAI AGTACT 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 606
Bme18I GGWCC 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 819
BmiI GGNNCC 4 cut(s) 13, 136, 554, 854
BmrFI CCNGG 1 cut(s) 606
BmrI ACTGGG 2 cut(s) 166, 537
BmuI ACTGGG 2 cut(s) 166, 537
BoxI GACNNNNGTC 2 cut(s) 799, 1085
BpmI CTGGAG 3 cut(s) 123, 171, 627
BpuEI CTTGAG 1 cut(s) 444
BsaI GGTCTC 2 cut(s) 816, 1093
BsaJI CCNNGG 3 cut(s) 604, 669, 1098
BsaWI WCCGGW 2 cut(s) 791, 964
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 675, 798, 1165
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 5 cut(s) 161, 353, 448, 532, 1200
Bse3DI GCAATG 1 cut(s) 1115
BseAI TCCGGA 1 cut(s) 964
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 604, 669, 1098
BseGI GGATG 2 cut(s) 927, 939
BseLI CCNNNNNNNGG 4 cut(s) 386, 675, 798, 1165
BseMI GCAATG 1 cut(s) 1115
BseMII CTCAG 3 cut(s) 437, 655, 827
BseNI ACTGG 5 cut(s) 161, 353, 448, 532, 1200
BseRI GAGGAG 1 cut(s) 481
BseXI GCAGC 4 cut(s) 408, 483, 712, 1099
BsgI GTGCAG 1 cut(s) 1115
Bsh1236I CGCG 1 cut(s) 1143
Bsh1285I CGRYCG 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 109, 253
BsiSI CCGG 4 cut(s) 9, 264, 792, 965
BslI CCNNNNNNNGG 4 cut(s) 386, 675, 798, 1165
BsmAI GTCTC 4 cut(s) 147, 618, 816, 1093
BsmI GAATGC 1 cut(s) 181
Bso31I GGTCTC 2 cut(s) 816, 1093
Bsp1286I GDGCHC 2 cut(s) 109, 253
Bsp13I TCCGGA 1 cut(s) 964
Bsp143I GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
BspACI CCGC 2 cut(s) 1141, 1179
BspCNI CTCAG 3 cut(s) 436, 654, 826
BspEI TCCGGA 1 cut(s) 964
BspFNI CGCG 1 cut(s) 1143
BspLI GGNNCC 4 cut(s) 13, 136, 554, 854
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 6 cut(s) 491, 547, 560, 847, 860, 963
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 2 cut(s) 816, 1093
BsrDI GCAATG 1 cut(s) 1115
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 5 cut(s) 161, 353, 448, 532, 1200
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 604, 669, 1098
BssMI GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 19, 544, 637
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 5 cut(s) 142, 423, 641, 785, 813
BstDSI CCRYGG 1 cut(s) 1098
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 2 cut(s) 927, 939
BstFNI CGCG 1 cut(s) 1143
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 9 cut(s) 36, 46, 232, 433, 499, 555, 855, 958, 976
BstMAI GTCTC 4 cut(s) 147, 618, 816, 1093
BstMBI GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 3 cut(s) 396, 896, 1109
BstNI CCWGG 1 cut(s) 606
BstPAI GACNNNNGTC 2 cut(s) 799, 1085
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 604
BstUI CGCG 1 cut(s) 1143
BstV1I GCAGC 4 cut(s) 408, 483, 712, 1099
BstX2I RGATCY 3 cut(s) 43, 552, 852
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 3 cut(s) 43, 552, 852
BtgI CCRYGG 1 cut(s) 1098
BtsCI GGATG 2 cut(s) 927, 939
BtsIMutI CAGTG 3 cut(s) 441, 633, 821
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 1 cut(s) 725
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 819
CseI GACGC 1 cut(s) 1132
Csp6I GTAC 4 cut(s) 135, 194, 599, 638
CviAII CATG 3 cut(s) 205, 1018, 1039
CviQI GTAC 4 cut(s) 135, 194, 599, 638
DdeI CTNAG 5 cut(s) 142, 423, 641, 785, 813
DpnI GATC 9 cut(s) 35, 45, 231, 432, 498, 554, 854, 957, 975
DpnII GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
DraI TTTAAA 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 2 cut(s) 816, 1093
Eco32I GATATC 2 cut(s) 171, 411
Eco47I GGWCC 1 cut(s) 819
Eco47III AGCGCT 1 cut(s) 724
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 992
Eco91I GGTNACC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 259
EcoRI GAATTC 3 cut(s) 208, 503, 1067
EcoRII CCWGG 1 cut(s) 604
EcoRV GATATC 2 cut(s) 171, 411
EcoT14I CCWWGG 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 3 cut(s) 208, 1021, 1042
FalI AAGNNNNNCTT 2 cut(s) 541, 573
FatI CATG 3 cut(s) 204, 1017, 1038
Fnu4HI GCNGC 4 cut(s) 397, 472, 726, 1113
FokI GGATG 2 cut(s) 926, 934
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 397, 472, 726, 1113
GlaI GCGC 1 cut(s) 724
GluI GCNGC 4 cut(s) 397, 472, 726, 1113
GsuI CTGGAG 3 cut(s) 123, 171, 627
HaeII RGCGCY 1 cut(s) 726
HapII CCGG 4 cut(s) 9, 264, 792, 965
HgaI GACGC 1 cut(s) 1132
HhaI GCGC 1 cut(s) 725
Hin1II CATG 3 cut(s) 208, 1021, 1042
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 376, 795, 968
HpaII CCGG 4 cut(s) 9, 264, 792, 965
HphI GGTGA 2 cut(s) 178, 1189
Hpy166II GTNNAC 3 cut(s) 819, 1080, 1205
Hpy188I TCNGA 6 cut(s) 175, 426, 973, 1148, 1188, 1213
Hpy188III TCNNGA 9 cut(s) 102, 188, 319, 414, 434, 461, 500, 965, 1072
Hpy8I GTNNAC 3 cut(s) 819, 1080, 1205
HpyAV CCTTC 7 cut(s) 170, 429, 431, 674, 832, 1016, 1169
HpyCH4III ACNGT 3 cut(s) 19, 544, 637
HpyCH4V TGCA 8 cut(s) 68, 692, 728, 743, 766, 952, 1115, 1132
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 896, 1109
HpyF3I CTNAG 5 cut(s) 142, 423, 641, 785, 813
Hsp92II CATG 3 cut(s) 208, 1021, 1042
HspAI GCGC 1 cut(s) 723
Kpn2I TCCGGA 1 cut(s) 964
KpnI GGTACC 1 cut(s) 138
Kzo9I GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
LmnI GCTCC 4 cut(s) 11, 104, 256, 468
Lsp1109I GCAGC 4 cut(s) 408, 483, 712, 1099
MaeIII GTNAC 2 cut(s) 27, 259
MalI GATC 9 cut(s) 35, 45, 231, 432, 498, 554, 854, 957, 975
MboI GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
MboII GAAGA 1 cut(s) 418
MfeI CAATTG 2 cut(s) 729, 747
MflI RGATCY 3 cut(s) 43, 552, 852
MhlI GDGCHC 2 cut(s) 109, 253
MlyI GAGTC 1 cut(s) 789
MmeI TCCRAC 1 cut(s) 967
MnlI CCTC 7 cut(s) 459, 466, 505, 836, 983, 1145, 1166
Mph1103I ATGCAT 1 cut(s) 70
MroI TCCGGA 1 cut(s) 964
MroXI GAANNNNTTC 1 cut(s) 1193
MseI TTAA 6 cut(s) 89, 305, 483, 537, 779, 1175
MslI CAYNNNNRTG 2 cut(s) 20, 362
MspI CCGG 4 cut(s) 9, 264, 792, 965
MspR9I CCNGG 1 cut(s) 606
MunI CAATTG 2 cut(s) 729, 747
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 1143
MwoI GCNNNNNNNGC 3 cut(s) 396, 896, 1109
NdeII GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
NlaIII CATG 3 cut(s) 208, 1021, 1042
NlaIV GGNNCC 4 cut(s) 13, 136, 554, 854
NmeAIII GCCGAG 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 70
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 1193
PfeI GAWTC 2 cut(s) 376, 968
PkrI GCNGC 4 cut(s) 398, 473, 727, 1114
PleI GAGTC 1 cut(s) 789
PpsI GAGTC 1 cut(s) 789
PshAI GACNNNNGTC 2 cut(s) 799, 1085
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 604
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 4 cut(s) 13, 136, 554, 854
PspPI GGNCC 1 cut(s) 819
PsuI RGATCY 3 cut(s) 43, 552, 852
RsaI GTAC 4 cut(s) 136, 195, 600, 639
RsaNI GTAC 4 cut(s) 135, 194, 599, 638
RseI CAYNNNNRTG 2 cut(s) 20, 362
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 6 cut(s) 89, 305, 483, 537, 779, 1175
SatI GCNGC 4 cut(s) 397, 472, 726, 1113
Sau3AI GATC 9 cut(s) 33, 43, 229, 430, 496, 552, 852, 955, 973
Sau96I GGNCC 1 cut(s) 819
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 1 cut(s) 606
SduI GDGCHC 2 cut(s) 109, 253
SinI GGWCC 1 cut(s) 819
SmiMI CAYNNNNRTG 2 cut(s) 20, 362
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SsiI CCGC 2 cut(s) 1141, 1179
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 604
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 19, 544, 637
TaqII GACCGA 1 cut(s) 202
TatI WGTACW 3 cut(s) 193, 598, 637
TfiI GAWTC 2 cut(s) 376, 968
Tru1I TTAA 6 cut(s) 89, 305, 483, 537, 779, 1175
Tru9I TTAA 6 cut(s) 89, 305, 483, 537, 779, 1175
TscAI CASTG 3 cut(s) 448, 640, 821
TseI GCWGC 4 cut(s) 396, 471, 725, 1112
TspDTI ATGAA 5 cut(s) 221, 259, 346, 504, 1209
TspRI CASTG 3 cut(s) 448, 640, 821
VpaK11BI GGWCC 1 cut(s) 819
XapI RAATTY 6 cut(s) 58, 208, 503, 864, 1067, 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 1068
XmnI GAANNNNTTC 1 cut(s) 1193
ZrmI AGTACT 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.