Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

3934717 .. 3936919

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACTACTGCAACACAAGCCGAAAACGTATCAGCCACCCAAAAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTCCTACCTACCGGCACCGTTCTCGCATTTGAGACCCTCATTCCTAGTTTCTCCAACAACGGAGCATGCCATCCGGCCAACAAGGGCCTTTCCTCATCCATCATTCTAATTTGTGCTCTCATCTGCTTCTTCTCCTCCTTTACTGATAGCTTCATTGACAGTACCGATGGAAAATTCTATTATGGGATCGCCACTAGCACAGGCATACGCATCTTAAATCCTAGAACAAAAAAGATCACTTATGAGGAAAGAAAGCGCTTGGAAAAGTATAAAATCACGGGTAGAGATTATTTCCATGCCTTTTTGACAGTAACTGTGTTCTTGGTCTTTGCTCTTACCGACCTCAATGTGAAAAATTGTTTCTTTCCTGATGCGGGAGATGATCTCAATCAAATCATTATCAACTTGCCACTAGGAGCTGGGATTTTCGCATCCTTCTTATTCACTATTTTTCCAACTACTCGAAGAGGGATAGGATACACGCAGCCCCGGCCGAATAAGGAGGAAAAAGACGGGAACCAGACCTCGGCCATCACGACCGCTTCCAAGGGGTCGGAGGCGGAAATGGTGGGTGTGGTCGTAGAAGGAGCAGTTCAGTCTGAGGCTCAGGTCTCCGCGACAGCCTCAACCCCACCGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

238

Amino Acids

25.68

Weight (kDa)

7.63

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	19 - 185	8.8e-60	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	2 cut(s)	692, 712
AciI	CCGC	5 cut(s)	449, 615, 635, 690, 710
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	3 cut(s)	150, 566, 603
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	1 cut(s)	238
AfeI	AGCGCT	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	449, 601
AluBI	AGCT	2 cut(s)	225, 494
AluI	AGCT	2 cut(s)	225, 494
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	101, 691
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	332
AoxI	GGCC	4 cut(s)	150, 160, 566, 603
ApeKI	GCWGC	2 cut(s)	59, 559
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	71, 571
BccI	CCATC	4 cut(s)	153, 182, 236, 614
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciVI	GTATCC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	101, 691
BfaI	CTAG	4 cut(s)	120, 270, 297, 488
BfoI	RGCGCY	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	2 cut(s)	60, 560
BlsI	GCNGC	2 cut(s)	61, 561
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	91, 593
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	3 cut(s)	294, 436, 515
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
Bpu10I	CCTNAGC	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	2 cut(s)	101, 691
BsaJI	CCNNGG	3 cut(s)	563, 600, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 601
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	563, 600, 621
BseGI	GGATG	3 cut(s)	145, 170, 506
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	449, 601
BseMII	CTCAG	2 cut(s)	666, 695
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	71, 571
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	2 cut(s)	692, 712
Bsh1285I	CGRYCG	2 cut(s)	569, 615
BshFI	GGCC	4 cut(s)	152, 162, 568, 605
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	2 cut(s)	569, 615
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	87, 149, 565
BslI	CCNNNNNNNGG	2 cut(s)	449, 601
BsmAI	GTCTC	2 cut(s)	101, 691
BsnI	GGCC	4 cut(s)	152, 162, 568, 605
Bso31I	GGTCTC	2 cut(s)	101, 691
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	261, 309, 457
BspACI	CCGC	5 cut(s)	449, 615, 635, 690, 710
BspANI	GGCC	4 cut(s)	152, 162, 568, 605
BspCNI	CTCAG	2 cut(s)	667, 694
BspFNI	CGCG	2 cut(s)	692, 712
BspLI	GGNNCC	2 cut(s)	91, 593
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	2 cut(s)	101, 691
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	563, 600, 621
BssMI	GATC	3 cut(s)	261, 309, 457
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	94, 236, 385, 391
Bst6I	CTCTTC	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	675, 681
BstF5I	GGATG	3 cut(s)	145, 170, 506
BstFNI	CGCG	2 cut(s)	692, 712
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	264, 312, 460
BstMAI	GTCTC	2 cut(s)	101, 691
BstMBI	GATC	3 cut(s)	261, 309, 457
BstMCI	CGRYCG	2 cut(s)	569, 615
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 59, 68, 565
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	563
BstUI	CGCG	2 cut(s)	692, 712
BstV1I	GCAGC	2 cut(s)	71, 571
BstZI	CGGCCG	1 cut(s)	566
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	152, 162, 568, 605
BtsCI	GGATG	3 cut(s)	145, 170, 506
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	141, 371
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	2 cut(s)	675, 681
DpnI	GATC	3 cut(s)	263, 311, 459
DpnII	GATC	3 cut(s)	261, 309, 457
EaeI	YGGCCR	3 cut(s)	150, 566, 603
EagI	CGGCCG	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
EciI	GGCGGA	1 cut(s)	650
EclXI	CGGCCG	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	621
Eco31I	GGTCTC	2 cut(s)	101, 691
Eco47III	AGCGCT	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	2 cut(s)	144, 374
FaiI	YATR	7 cut(s)	50, 142, 258, 281, 318, 345, 372
FatI	CATG	2 cut(s)	140, 370
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	60, 560
FokI	GGATG	3 cut(s)	132, 157, 493
Fsp4HI	GCNGC	2 cut(s)	60, 560
FspBI	CTAG	4 cut(s)	120, 270, 297, 488
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	60, 560
GsaI	CCCAGC	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	4 cut(s)	152, 162, 568, 605
HapII	CCGG	3 cut(s)	87, 149, 565
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	144, 374
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HpaII	CCGG	3 cut(s)	87, 149, 565
Hpy188I	TCNGA	2 cut(s)	631, 676
Hpy188III	TCNNGA	2 cut(s)	443, 610
HpyAV	CCTTC	2 cut(s)	520, 653
HpyCH4III	ACNGT	4 cut(s)	94, 236, 385, 391
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	11, 59
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 59, 68, 565
HpyF3I	CTNAG	2 cut(s)	675, 681
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	144, 374
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	261, 309, 457
LmnI	GCTCC	3 cut(s)	137, 491, 662
LpnPI	CCDG	9 cut(s)	67, 100, 162, 261, 456, 480, 578, 608, 668
Lsp1109I	GCAGC	2 cut(s)	71, 571
LweI	GCATC	3 cut(s)	294, 436, 515
MaeI	CTAG	4 cut(s)	120, 270, 297, 488
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	263, 311, 459
MboI	GATC	3 cut(s)	261, 309, 457
MboII	GAAGA	2 cut(s)	196, 552
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	183, 248, 430
MmeI	TCCRAC	3 cut(s)	153, 554, 609
MseI	TTAA	1 cut(s)	290
MspI	CCGG	3 cut(s)	87, 149, 565
MspR9I	CCNGG	1 cut(s)	565
MvnI	CGCG	2 cut(s)	692, 712
MwoI	GCNNNNNNNGC	4 cut(s)	17, 59, 68, 565
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	3 cut(s)	261, 309, 457
NlaIII	CATG	2 cut(s)	144, 374
NlaIV	GGNNCC	2 cut(s)	91, 593
NmeAIII	GCCGAG	1 cut(s)	581
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	61, 561
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	91, 593
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	60, 560
Sau3AI	GATC	3 cut(s)	261, 309, 457
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	8 cut(s)	30, 78, 85, 227, 420, 496, 602, 687
SfaNI	GCATC	3 cut(s)	294, 436, 515
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	3 cut(s)	183, 248, 430
SsiI	CCGC	5 cut(s)	449, 615, 635, 690, 710
SspMI	CTAG	4 cut(s)	120, 270, 297, 488
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	4 cut(s)	94, 236, 385, 391
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	538
TasI	AATT	3 cut(s)	183, 248, 430
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	2 cut(s)	59, 559
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	4 cut(s)	120, 270, 297, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.