Rorug05G0523600

Solute carrier family 40 member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
70936601 .. 70937809
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0523600.1

Sequence Viewer

Length: 1209 bp
ATGGGGGATCGAGAAAAGTTGACACAACTTCCAACCCTCCCGACTGAAATTATCCCCGAAATTCTATCCTGGCTTGAAGTAAAGCCCCTGTGCCGATTCAGGTGCGTGTCGAAGTCCTGGAATTCTCTGATTTCTGAACCCGGTTTTGTGAAATTGCACTCTAGCAAAGCCATTGAGCATGAGCAGGTGCTTGGCCAAAGACACAGAGTCATGGCCACTGGTGAACGCGGTAAAGTTTACACATTTGACCTCGATGAGCTTTTCGATCAAGTTGATCTAGATAATCCTGAGGGTCAGGTAGTAGTCTCTGAGTCTGAGTCGGATAGCATAGGTGATAGTCTTAATGACAGTGATTCATTAGGCACCGAGTCTGAGTCGGATGACCAGCTGGATGATGATTCTTATGATAGTGATGATGACATGCATTCCTGCTTGCCGTTTTACTCCAATGGCTTGGTGCTGAAGTACTTGTCAAATTATGATAAGTTTAAGTTATATAATCCTGCAACTAGGGAATCGAAGGTACTCTCAAAACCACCTTCAAAGTTTCTATGGCAGAATGTAAATCAACATAAGCTATATGGCTTTGGATTTGATTCCTCCTGCCTAGATTACAAGATGGTTTGTGGGGAGTACTACCGATATGAACTTTGGTTCAGTGTATATTCGTTGAAAACCGGTTCTTGGAGAGTCATTCCAAGGGGATATGACTATGGGGCTTTAGATTTAAAATCTAATATGGAGGGGATAGTAGTAAATGGAAATATTCATTGGTTGGTTCGTACAAAAGACAGTGCATCGTCCATGGTTCTGGTGTCTTTTCTTGTTGCAGAGGAAATGGTTCGGACTATTCCGCTGCCGCCTGGTTTCAATTCTGAAGGTGGTGATTATTATCTGACTGTCTTTAGGGAATGTCTATGTGTGGCAGTGAAGGGGGGTCCAGAGTATTGGATCATGAACGAATATGGAGTGAGAGAATCTTGGACTCAACAAAGAATGTCCGTCCCTAGTTCCCGATGGTTACATTTAGGTTTCAGGAAAAACAATCATGAACTGGTGTACTTCGATGACCGTCAGCGTTTGGTTATGTACAATTTTAATGAAGATCGCTTTTGCAATCTACCCTTTTGTGATCGTCCCGGAATTAAGTTTGCTGCGATCTATGTGGAGACCATTTTTTCACTCAAGTGCTATCGCGGCATTGATTGA

Protein Analysis

402

Amino Acids

46.41

Weight (kDa)

5.04

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 47 1.6e-08 F-box-like
F-box PF00646 12 - 49 1.9e-10 F-box domain
FBA_1 PF07734 134 - 364 8.6e-21 F-box associated beta propeller domain
FBA_3 PF08268 134 - 349 1.9e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 2 cut(s) 228, 1197
AciI CCGC 4 cut(s) 228, 854, 860, 1197
AclWI GGATC 2 cut(s) 15, 959
AcoI YGGCCR 2 cut(s) 193, 213
AcsI RAATTY 2 cut(s) 60, 121
AcuI CTGAAG 2 cut(s) 482, 897
AfaI GTAC 6 cut(s) 467, 525, 635, 784, 1061, 1091
AfiI CCNNNNNNNGG 1 cut(s) 684
AgeI ACCGGT 1 cut(s) 677
AgsI TTSAA 4 cut(s) 77, 543, 673, 871
AhdI GACNNNNNGTC 1 cut(s) 206
AjnI CCWGG 3 cut(s) 68, 116, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 754, 786
AleI CACNNNNGTG 1 cut(s) 1186
AluBI AGCT 3 cut(s) 259, 388, 577
AluI AGCT 3 cut(s) 259, 388, 577
Alw26I GTCTC 2 cut(s) 310, 1163
AlwI GGATC 2 cut(s) 15, 959
AoxI GGCC 2 cut(s) 193, 213
ApeKI GCWGC 2 cut(s) 856, 1154
ApoI RAATTY 2 cut(s) 60, 121
AsiGI ACCGGT 1 cut(s) 677
Asp700I GAANNNNTTC 1 cut(s) 840
AspS9I GGNCC 1 cut(s) 938
AsuC2I CCSGG 2 cut(s) 141, 1140
AsuHPI GGTGA 3 cut(s) 233, 344, 896
AvaII GGWCC 1 cut(s) 938
AxyI CCTNAGG 1 cut(s) 288
BalI TGGCCA 2 cut(s) 195, 215
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 843, 1141
BccI CCATC 2 cut(s) 613, 1011
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 3 cut(s) 70, 118, 864
BcnI CCSGG 2 cut(s) 141, 1140
BcoDI GTCTC 2 cut(s) 310, 1163
BfaI CTAG 5 cut(s) 162, 278, 510, 608, 1008
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 4 cut(s) 857, 860, 1155, 1198
BlsI GCNGC 4 cut(s) 858, 861, 1156, 1199
BmcAI AGTACT 2 cut(s) 467, 635
Bme1390I CCNGG 5 cut(s) 70, 118, 141, 864, 1140
Bme18I GGWCC 1 cut(s) 938
BmeRI GACNNNNNGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 938
BmiI GGNNCC 2 cut(s) 364, 939
BmrFI CCNGG 5 cut(s) 70, 118, 141, 864, 1140
BmsI GCATC 1 cut(s) 806
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 2 cut(s) 141, 1140
BsaBI GATNNNNATC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 1163
BsaJI CCNNGG 2 cut(s) 698, 804
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 684
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 2 cut(s) 223, 1059
Bse21I CCTNAGG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 3 cut(s) 70, 118, 864
BseDI CCNNGG 2 cut(s) 698, 804
BseGI GGATG 2 cut(s) 385, 397
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 1 cut(s) 684
BseMII CTCAG 4 cut(s) 279, 300, 306, 363
BseNI ACTGG 2 cut(s) 223, 1059
BseXI GCAGC 2 cut(s) 843, 1141
Bsh1236I CGCG 2 cut(s) 228, 1197
BshFI GGCC 2 cut(s) 195, 215
BshNI GGYRCC 1 cut(s) 362
BshTI ACCGGT 1 cut(s) 677
BsiSI CCGG 3 cut(s) 141, 678, 1140
BslFI GGGAC 2 cut(s) 989, 1122
BslI CCNNNNNNNGG 1 cut(s) 684
BsmAI GTCTC 2 cut(s) 310, 1163
BsmFI GGGAC 2 cut(s) 989, 1122
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 2 cut(s) 195, 215
Bso31I GGTCTC 1 cut(s) 1163
Bsp1407I TGTACA 1 cut(s) 1089
Bsp143I GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 4 cut(s) 228, 854, 860, 1197
BspANI GGCC 2 cut(s) 195, 215
BspCNI CTCAG 4 cut(s) 280, 301, 307, 364
BspFNI CGCG 2 cut(s) 228, 1197
BspHI TCATGA 2 cut(s) 954, 1048
BspLI GGNNCC 2 cut(s) 364, 939
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 2 cut(s) 15, 959
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 1163
BsrFI RCCGGY 1 cut(s) 677
BsrGI TGTACA 1 cut(s) 1089
BsrI ACTGG 2 cut(s) 223, 1059
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 2 cut(s) 698, 804
BssMI GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
BssT1I CCWWGG 2 cut(s) 698, 804
Bst2UI CCWGG 3 cut(s) 70, 118, 864
Bst4CI ACNGT 4 cut(s) 350, 794, 901, 1073
BstAUI TGTACA 1 cut(s) 1089
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 4 cut(s) 288, 309, 315, 372
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 385, 397
BstFNI CGCG 2 cut(s) 228, 1197
BstKTI GATC 7 cut(s) 10, 268, 277, 954, 1108, 1135, 1161
BstMAI GTCTC 2 cut(s) 310, 1163
BstMBI GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
BstMWI GCNNNNNNNGC 1 cut(s) 1197
BstNI CCWGG 3 cut(s) 70, 118, 864
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 5 cut(s) 68, 116, 139, 862, 1138
BstUI CGCG 2 cut(s) 228, 1197
BstV1I GCAGC 2 cut(s) 843, 1141
BstXI CCANNNNNNTGG 3 cut(s) 454, 811, 948
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 2 cut(s) 195, 215
BtgI CCRYGG 1 cut(s) 804
BtsCI GGATG 2 cut(s) 385, 397
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 5 cut(s) 216, 355, 664, 799, 933
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 434
CciI TCATGA 2 cut(s) 954, 1048
Cfr10I RCCGGY 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 938
Csp6I GTAC 6 cut(s) 466, 524, 634, 783, 1060, 1090
CspAI ACCGGT 1 cut(s) 677
CviAII CATG 6 cut(s) 179, 211, 421, 805, 955, 1049
CviQI GTAC 6 cut(s) 466, 524, 634, 783, 1060, 1090
DdeI CTNAG 4 cut(s) 288, 309, 315, 372
DpnI GATC 7 cut(s) 9, 267, 276, 953, 1107, 1134, 1160
DpnII GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
DraI TTTAAA 1 cut(s) 729
DriI GACNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 2 cut(s) 193, 213
Eam1105I GACNNNNNGTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 698, 804
Eco31I GGTCTC 1 cut(s) 1163
Eco47I GGWCC 1 cut(s) 938
Eco57I CTGAAG 2 cut(s) 482, 897
Eco81I CCTNAGG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 3 cut(s) 68, 116, 862
EcoT14I CCWWGG 2 cut(s) 698, 804
EcoT22I ATGCAT 1 cut(s) 426
ErhI CCWWGG 2 cut(s) 698, 804
FaeI CATG 6 cut(s) 182, 214, 424, 808, 958, 1052
FaqI GGGAC 2 cut(s) 989, 1122
FatI CATG 6 cut(s) 178, 210, 420, 804, 954, 1048
Fnu4HI GCNGC 4 cut(s) 857, 860, 1155, 1198
FokI GGATG 2 cut(s) 392, 404
Fsp4HI GCNGC 4 cut(s) 857, 860, 1155, 1198
FspBI CTAG 5 cut(s) 162, 278, 510, 608, 1008
GluI GCNGC 4 cut(s) 857, 860, 1155, 1198
HaeIII GGCC 2 cut(s) 195, 215
HapII CCGG 3 cut(s) 141, 678, 1140
Hin1II CATG 6 cut(s) 182, 214, 424, 808, 958, 1052
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HpaII CCGG 3 cut(s) 141, 678, 1140
HphI GGTGA 3 cut(s) 233, 344, 896
Hpy166II GTNNAC 4 cut(s) 21, 224, 238, 1060
Hpy188III TCNNGA 9 cut(s) 11, 40, 278, 287, 941, 955, 1014, 1036, 1049
Hpy8I GTNNAC 4 cut(s) 21, 224, 238, 1060
HpyAV CCTTC 4 cut(s) 514, 549, 872, 925
HpyCH4III ACNGT 4 cut(s) 350, 794, 901, 1073
HpyCH4V TGCA 6 cut(s) 157, 424, 506, 797, 830, 1116
HpyF10VI GCNNNNNNNGC 1 cut(s) 1197
HpyF3I CTNAG 4 cut(s) 288, 309, 315, 372
Hsp92II CATG 6 cut(s) 182, 214, 424, 808, 958, 1052
Kzo9I GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
Lsp1109I GCAGC 2 cut(s) 843, 1141
LweI GCATC 1 cut(s) 806
MaeI CTAG 5 cut(s) 162, 278, 510, 608, 1008
MaeIII GTNAC 1 cut(s) 1020
MalI GATC 7 cut(s) 9, 267, 276, 953, 1107, 1134, 1160
MboI GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
MboII GAAGA 1 cut(s) 1115
MlsI TGGCCA 2 cut(s) 195, 215
MluCI AATT 8 cut(s) 48, 60, 121, 152, 475, 871, 1093, 1143
MluNI TGGCCA 2 cut(s) 195, 215
MlyI GAGTC 7 cut(s) 216, 320, 326, 377, 383, 699, 979
MmeI TCCRAC 3 cut(s) 56, 300, 357
MnlI CCTC 6 cut(s) 47, 260, 283, 610, 736, 826
Mox20I TGGCCA 2 cut(s) 195, 215
Mph1103I ATGCAT 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 840
MscI TGGCCA 2 cut(s) 195, 215
MseI TTAA 5 cut(s) 342, 489, 728, 1098, 1146
MslI CAYNNNNRTG 1 cut(s) 1186
Msp20I TGGCCA 2 cut(s) 195, 215
MspA1I CMGCKG 2 cut(s) 388, 856
MspI CCGG 3 cut(s) 141, 678, 1140
MspR9I CCNGG 5 cut(s) 70, 118, 141, 864, 1140
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 70, 118, 864
MvnI CGCG 2 cut(s) 228, 1197
MwoI GCNNNNNNNGC 1 cut(s) 1197
NciI CCSGG 2 cut(s) 141, 1140
NcoI CCATGG 1 cut(s) 804
NdeII GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
NlaIII CATG 6 cut(s) 182, 214, 424, 808, 958, 1052
NlaIV GGNNCC 2 cut(s) 364, 939
NsiI ATGCAT 1 cut(s) 426
NspI RCATGY 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 1186
PagI TCATGA 2 cut(s) 954, 1048
PaqCI CACCTGC 1 cut(s) 175
PctI GAATGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 6 cut(s) 96, 353, 398, 515, 596, 977
PfoI TCCNGGA 2 cut(s) 116, 1138
PinAI ACCGGT 1 cut(s) 677
PkrI GCNGC 4 cut(s) 858, 861, 1156, 1199
PleI GAGTC 7 cut(s) 215, 319, 325, 376, 382, 698, 979
PpsI GAGTC 7 cut(s) 215, 319, 325, 376, 382, 698, 979
Psp6I CCWGG 3 cut(s) 68, 116, 862
PspGI CCWGG 3 cut(s) 68, 116, 862
PspN4I GGNNCC 2 cut(s) 364, 939
PspPI GGNCC 1 cut(s) 938
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 6 cut(s) 467, 525, 635, 784, 1061, 1091
RsaNI GTAC 6 cut(s) 466, 524, 634, 783, 1060, 1090
RseI CAYNNNNRTG 1 cut(s) 1186
SaqAI TTAA 5 cut(s) 342, 489, 728, 1098, 1146
SatI GCNGC 4 cut(s) 857, 860, 1155, 1198
Sau3AI GATC 7 cut(s) 7, 265, 274, 951, 1105, 1132, 1158
Sau96I GGNCC 1 cut(s) 938
ScaI AGTACT 2 cut(s) 467, 635
SchI GAGTC 7 cut(s) 216, 320, 326, 377, 383, 699, 979
ScrFI CCNGG 5 cut(s) 70, 118, 141, 864, 1140
SfaNI GCATC 1 cut(s) 806
SinI GGWCC 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 1186
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
Sse9I AATT 8 cut(s) 48, 60, 121, 152, 475, 871, 1093, 1143
SsiI CCGC 4 cut(s) 228, 854, 860, 1197
SspI AATATT 1 cut(s) 766
SspMI CTAG 5 cut(s) 162, 278, 510, 608, 1008
StyD4I CCNGG 5 cut(s) 68, 116, 139, 862, 1138
StyI CCWWGG 2 cut(s) 698, 804
TaaI ACNGT 4 cut(s) 350, 794, 901, 1073
TaqI TCGA 6 cut(s) 10, 110, 252, 264, 518, 1065
TasI AATT 8 cut(s) 48, 60, 121, 152, 475, 871, 1093, 1143
TatI WGTACW 4 cut(s) 465, 633, 1059, 1089
TauI GCSGC 2 cut(s) 862, 1200
TfiI GAWTC 6 cut(s) 96, 353, 398, 515, 596, 977
Tru1I TTAA 5 cut(s) 342, 489, 728, 1098, 1146
Tru9I TTAA 5 cut(s) 342, 489, 728, 1098, 1146
TscAI CASTG 5 cut(s) 223, 355, 664, 799, 933
TseI GCWGC 2 cut(s) 856, 1154
TspDTI ATGAA 6 cut(s) 345, 660, 758, 971, 1065, 1116
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 5 cut(s) 223, 355, 664, 799, 933
VpaK11BI GGWCC 1 cut(s) 938
XapI RAATTY 2 cut(s) 60, 121
XbaI TCTAGA 1 cut(s) 277
XceI RCATGY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 5 cut(s) 162, 278, 510, 608, 1008
ZrmI AGTACT 2 cut(s) 467, 635
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.