Rroxscaffold_6G00418280

Solute carrier family 40 member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
39824734 .. 39826997
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418280.1

Sequence Viewer

Length: 1200 bp
ATGATTGCTGGAGCCACCGTGATGGCGTTACTGATCTACCCAGATCTAAAGCTCACAAGTTTCTATGCATTTGTTTTACTTATCATATTAACCAACATCTCTGGAGCTCTTGGAGTTCTCTCCACTCTTGCTGGGGTTGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTAACAAACATGAATTCGGTCATTAGGCGTATTGATCTTTTCTCCAAACTTTGTGCTCCGGTGGTAACCGGCCTCATCATTAGCTTTGTATCACTAAAAGCTTCTGCTTTAACTTTAGTACTCTGGAATACCATATCTGTTTGGCTAGAATACTGGCTATTCATTTCTGTGTATAATGGGATTCCGGCTTTAGGTGAAAGCAGCCAAAGGAAGATATCAAGACCTTCTCAAAGTGATCTTGAAGGCACTGGCACATCTACTTCTCAAGAGAGAAGTAGCTTGCTTTCTAAAGATGAAAATGATTCAGAATTCCCTGAGGAAAGCTGGATTACGGGAGTTATTAAAATGGCGTCAAGGATCCCTTATGTTAGAGCTTGGAGCGTGTATTTGCAGCAAGATGTTGTGCTTCCTGGAGTATCTCTGGCTTTGTTATATTTCACTGTACTCAGCTTTGGAACATTGATGATAGCTACCTTGGAATGGGAAGGCATACCTGCATACACCATTGGGATAGCTCGTGGAATAAGCGCTGCAATTGGAATTTCTGCAACAGTTGTTTATCCCATCTTGCAATCTCATATCTTAACGCTTAGAACCGGACTCTGGTCTATCTGGTCTCAGTGGACCTTCCTCATATTATGTGTTGCTTCAATATGGATCCATAAGAGAATTTGGTCAGCATATATGCTAATGGCAGGAGTGGCTACTTCTCGGCTTGGGTTGTGGATGTTTGATTTGGCTGTCATCCAACAAATGCAGGATCAAGTTCCTGAATCAGATCGTTGTGTAGTGGGAGGTGTTCAAAACTCCCTTCAGTCCAGCATGGATTTGATGGGCTATGTCCTGGGAATAATCATATCTAATCCACAGGAATTCTGGAAGTTGATTTTGGTCTCGTTTGCCGTGGCAACATTGGCAGCATTGCTCTATACCCTGCACGTTTACCGCGTACGAAAGCACCTCCTTCACTTTGAGAAATTAGCCTTCTTTCTGAAATGCTTCACCAGTTCACAATCTGAAAATTCATAA

Protein Analysis

399

Amino Acids

44.15

Weight (kDa)

6.6

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 2 - 358 2.4e-113 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 673
AccII CGCG 1 cut(s) 1119
AciI CCGC 1 cut(s) 1117
AclWI GGATC 5 cut(s) 523, 536, 823, 836, 939
AcsI RAATTY 6 cut(s) 184, 479, 711, 840, 1043, 1192
AcuI CTGAAG 1 cut(s) 968
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 4 cut(s) 171, 291, 615, 1122
AfeI AGCGCT 1 cut(s) 700
AfiI CCNNNNNNNGG 3 cut(s) 362, 651, 774
AgsI TTSAA 3 cut(s) 413, 822, 974
AjnI CCWGG 2 cut(s) 580, 1014
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
Alw21I GWGCWC 2 cut(s) 109, 229
Alw26I GTCTC 2 cut(s) 792, 1069
AlwI GGATC 5 cut(s) 523, 536, 823, 836, 939
Aor51HI AGCGCT 1 cut(s) 700
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 4 cut(s) 372, 562, 701, 1088
ApoI RAATTY 6 cut(s) 184, 479, 711, 840, 1043, 1192
Asp700I GAANNNNTTC 1 cut(s) 1169
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 3 cut(s) 154, 377, 1165
AvaII GGWCC 1 cut(s) 795
AxyI CCTNAGG 1 cut(s) 486
BamHI GGATCC 2 cut(s) 528, 828
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 109, 229
BbvI GCAGC 4 cut(s) 384, 574, 688, 1100
BccI CCATC 3 cut(s) 16, 743, 997
BceAI ACGGC 1 cut(s) 1058
BciT130I CCWGG 2 cut(s) 582, 1016
BcoDI GTCTC 2 cut(s) 792, 1069
BfaI CTAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 673
BglII AGATCT 1 cut(s) 43
BisI GCNGC 4 cut(s) 373, 563, 702, 1089
BlsI GCNGC 4 cut(s) 374, 564, 703, 1090
BmcAI AGTACT 2 cut(s) 171, 291
Bme1390I CCNGG 2 cut(s) 582, 1016
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 3 cut(s) 13, 530, 830
BmrFI CCNGG 2 cut(s) 582, 1016
BoxI GACNNNNGTC 1 cut(s) 775
BpmI CTGGAG 4 cut(s) 30, 123, 147, 603
BpuEI CTTGAG 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 521
BsaI GGTCTC 2 cut(s) 792, 1069
BsaJI CCNNGG 3 cut(s) 645, 1015, 1074
BsaWI WCCGGW 2 cut(s) 229, 767
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 651, 774
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 329, 424, 1176
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 1091
BseBI CCWGG 2 cut(s) 582, 1016
BseDI CCNNGG 3 cut(s) 645, 1015, 1074
BseGI GGATG 2 cut(s) 903, 915
BseLI CCNNNNNNNGG 3 cut(s) 362, 651, 774
BseMI GCAATG 1 cut(s) 1091
BseMII CTCAG 3 cut(s) 477, 631, 803
BseNI ACTGG 3 cut(s) 329, 424, 1176
BseXI GCAGC 4 cut(s) 384, 574, 688, 1100
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 1091
Bsh1236I CGCG 1 cut(s) 1119
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 109, 229
BsiSI CCGG 4 cut(s) 230, 240, 356, 768
BsiWI CGTACG 1 cut(s) 1120
BslI CCNNNNNNNGG 3 cut(s) 362, 651, 774
BsmAI GTCTC 2 cut(s) 792, 1069
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 2 cut(s) 792, 1069
Bsp1286I GDGCHC 2 cut(s) 109, 229
Bsp143I GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
BspACI CCGC 1 cut(s) 1117
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 478, 630, 802
BspFNI CGCG 1 cut(s) 1119
BspLI GGNNCC 3 cut(s) 13, 530, 830
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 5 cut(s) 523, 536, 823, 836, 939
BspTNI GGTCTC 2 cut(s) 792, 1069
BsrDI GCAATG 1 cut(s) 1091
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 3 cut(s) 329, 424, 1176
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 645, 1015, 1074
BssMI GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
BssNI GRCGYC 1 cut(s) 521
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 582, 1016
Bst4CI ACNGT 3 cut(s) 19, 613, 724
BstACI GRCGYC 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 4 cut(s) 486, 617, 761, 789
BstDSI CCRYGG 1 cut(s) 1074
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 903, 915
BstFNI CGCG 1 cut(s) 1119
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 8 cut(s) 36, 46, 208, 409, 531, 831, 934, 952
BstMAI GTCTC 2 cut(s) 792, 1069
BstMBI GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
BstMWI GCNNNNNNNGC 2 cut(s) 872, 1085
BstNI CCWGG 2 cut(s) 582, 1016
BstPAI GACNNNNGTC 1 cut(s) 775
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 580, 1014
BstUI CGCG 1 cut(s) 1119
BstV1I GCAGC 4 cut(s) 384, 574, 688, 1100
BstX2I RGATCY 3 cut(s) 43, 528, 828
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 3 cut(s) 43, 528, 828
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 1074
BtsCI GGATG 2 cut(s) 903, 915
BtsIMutI CAGTG 3 cut(s) 417, 609, 797
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 452
CfoI GCGC 1 cut(s) 701
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 795
CseI GACGC 1 cut(s) 510
Csp6I GTAC 4 cut(s) 170, 290, 614, 1121
CviAII CATG 2 cut(s) 181, 994
CviQI GTAC 4 cut(s) 170, 290, 614, 1121
DdeI CTNAG 4 cut(s) 486, 617, 761, 789
DpnI GATC 8 cut(s) 35, 45, 207, 408, 530, 830, 933, 951
DpnII GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 2 cut(s) 792, 1069
Eco32I GATATC 2 cut(s) 147, 387
Eco47I GGWCC 1 cut(s) 795
Eco47III AGCGCT 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 968
Eco81I CCTNAGG 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 235
EcoRI GAATTC 3 cut(s) 184, 479, 1043
EcoRII CCWGG 2 cut(s) 580, 1014
EcoRV GATATC 2 cut(s) 147, 387
EcoT14I CCWWGG 1 cut(s) 645
EcoT22I ATGCAT 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 2 cut(s) 184, 997
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FatI CATG 2 cut(s) 180, 993
Fnu4HI GCNGC 4 cut(s) 373, 563, 702, 1089
FokI GGATG 2 cut(s) 902, 910
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 373, 563, 702, 1089
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 700
GluI GCNGC 4 cut(s) 373, 563, 702, 1089
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 4 cut(s) 30, 123, 147, 603
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 1 cut(s) 243
HapII CCGG 4 cut(s) 230, 240, 356, 768
HgaI GACGC 1 cut(s) 510
HhaI GCGC 1 cut(s) 701
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 2 cut(s) 184, 997
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 4 cut(s) 352, 473, 771, 944
HpaII CCGG 4 cut(s) 230, 240, 356, 768
HphI GGTGA 3 cut(s) 154, 377, 1165
Hpy166II GTNNAC 3 cut(s) 795, 1114, 1181
Hpy188I TCNGA 5 cut(s) 151, 478, 949, 1164, 1189
Hpy188III TCNNGA 8 cut(s) 102, 164, 295, 390, 410, 437, 941, 1048
Hpy8I GTNNAC 3 cut(s) 795, 1114, 1181
HpyAV CCTTC 8 cut(s) 146, 405, 407, 650, 808, 992, 1145, 1165
HpyCH4III ACNGT 3 cut(s) 19, 613, 724
HpyCH4IV ACGT 1 cut(s) 1110
HpyCH4V TGCA 8 cut(s) 68, 562, 668, 704, 719, 742, 928, 1108
HpyF10VI GCNNNNNNNGC 2 cut(s) 872, 1085
HpyF3I CTNAG 4 cut(s) 486, 617, 761, 789
HpySE526I ACGT 1 cut(s) 1110
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 2 cut(s) 184, 997
HspAI GCGC 1 cut(s) 699
Kzo9I GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
LmnI GCTCC 4 cut(s) 11, 104, 232, 549
Lsp1109I GCAGC 4 cut(s) 384, 574, 688, 1100
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 1110
MaeIII GTNAC 2 cut(s) 27, 235
MalI GATC 8 cut(s) 35, 45, 207, 408, 530, 830, 933, 951
MboI GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
MboII GAAGA 1 cut(s) 394
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 3 cut(s) 43, 528, 828
MhlI GDGCHC 2 cut(s) 109, 229
MluCI AATT 8 cut(s) 184, 479, 705, 711, 840, 1043, 1148, 1192
MlyI GAGTC 1 cut(s) 765
MmeI TCCRAC 1 cut(s) 943
MnlI CCTC 5 cut(s) 254, 481, 812, 959, 1142
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 1169
MseI TTAA 4 cut(s) 89, 281, 513, 755
MslI CAYNNNNRTG 2 cut(s) 20, 338
MspI CCGG 4 cut(s) 230, 240, 356, 768
MspR9I CCNGG 2 cut(s) 582, 1016
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 2 cut(s) 582, 1016
MvnI CGCG 1 cut(s) 1119
MwoI GCNNNNNNNGC 2 cut(s) 872, 1085
NdeII GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
NlaIII CATG 2 cut(s) 184, 997
NlaIV GGNNCC 3 cut(s) 13, 530, 830
NmeAIII GCCGAG 1 cut(s) 862
NsiI ATGCAT 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 1116
PctI GAATGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 1169
PfeI GAWTC 3 cut(s) 352, 473, 944
Pfl23II CGTACG 1 cut(s) 1120
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 4 cut(s) 374, 564, 703, 1090
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
PshAI GACNNNNGTC 1 cut(s) 775
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 580, 1014
PspEI GGTNACC 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 580, 1014
PspLI CGTACG 1 cut(s) 1120
PspN4I GGNNCC 3 cut(s) 13, 530, 830
PspPI GGNCC 1 cut(s) 795
PsuI RGATCY 3 cut(s) 43, 528, 828
RsaI GTAC 4 cut(s) 171, 291, 615, 1122
RsaNI GTAC 4 cut(s) 170, 290, 614, 1121
RseI CAYNNNNRTG 2 cut(s) 20, 338
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 4 cut(s) 89, 281, 513, 755
SatI GCNGC 4 cut(s) 373, 563, 702, 1089
Sau3AI GATC 8 cut(s) 33, 43, 205, 406, 528, 828, 931, 949
Sau96I GGNCC 1 cut(s) 795
ScaI AGTACT 2 cut(s) 171, 291
SchI GAGTC 1 cut(s) 765
ScrFI CCNGG 2 cut(s) 582, 1016
SduI GDGCHC 2 cut(s) 109, 229
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 2 cut(s) 20, 338
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 8 cut(s) 184, 479, 705, 711, 840, 1043, 1148, 1192
SsiI CCGC 1 cut(s) 1117
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 580, 1014
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 3 cut(s) 19, 613, 724
TaiI ACGT 1 cut(s) 1113
TaqII GACCGA 1 cut(s) 178
TasI AATT 8 cut(s) 184, 479, 705, 711, 840, 1043, 1148, 1192
TatI WGTACW 3 cut(s) 169, 289, 613
TfiI GAWTC 3 cut(s) 352, 473, 944
Tru1I TTAA 4 cut(s) 89, 281, 513, 755
Tru9I TTAA 4 cut(s) 89, 281, 513, 755
TscAI CASTG 3 cut(s) 424, 616, 797
TseI GCWGC 4 cut(s) 372, 562, 701, 1088
TspDTI ATGAA 4 cut(s) 197, 322, 480, 1185
TspRI CASTG 3 cut(s) 424, 616, 797
VpaK11BI GGWCC 1 cut(s) 795
XapI RAATTY 6 cut(s) 184, 479, 711, 840, 1043, 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 1044
XmnI GAANNNNTTC 1 cut(s) 1169
XspI CTAG 1 cut(s) 317
ZrmI AGTACT 2 cut(s) 171, 291
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.