RchiOBHm_Chr3g0461441

Solute carrier family 40 member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
9495626 .. 9498175
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42786

Sequence Viewer

Length: 1302 bp
ATGTTTAAATCTGAGTATCTTACGACTATATATGGACAGATTCTTCGAGTTTGGTTAGTAACACAAAATCTCTCTTTTATGATTGCCGGAGCCACCGTGATGGCGTTACTGATCTACCCAGATCTAAAGCTCACAAATTTCAATGCATTTGTTTTACTTATCATATTAACCAACATCTCTGGAGCTCTTGGAGTTCTCTCCACTCTTGCTGGTACCATCTTAGTTGAAAGAGACTGGGTTGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTAACAAACATGAATTCGGTCCTTAGGCGTATTGATCTTTTCTCCAAGCTATGTGCTCCTGTGGTAACCGGCTTCATCATCAGCTTTGTATCACTAAAAGCTTCTGCTTTAACTTTAGCACTCTGGAATACTATATCTGTTTGGCTGGAATACTGGCTATTCATTTCTGTGTATAATGGGATTCCGGCTTTAGGCGAAAGCAGTCAAAGGAAGATATCAAGACCTTCTCAGAGTGATCTTGAAGGCTCAGGCACATCTTCTTCTCAAGAGAGGAGCAGCTTGCTTTTTAAAGATGAAAATGATCCAGAATTAGCAGAGGAAAGCTGGATTACTGGGGTTATTAAAACGGTATCAAGGATCCCTTATGTTAGTGCTTGGAGTGTGTATTTGCAGCAAGATGTTGTACTCCCTGGAGTATCTCTGGCTTTGTTATATTTCACTGTACTCAGCTTTGGAACATTGATGACAGCTACCTTGGAATGGGAAGGCATACCTGCATACACCATTGGGATAGCTCGTGGAATAAGCGCTGCAATTGGAATTTCTGCAACAGTTGTTTATCCCATCTTGCAAGCTCATTTCTTAACACTTAGAACCGGACTCTGGTCTATCTGGTGTCAGTGGACCTTCCTCATATTATGTGTTGCTTCAATATGGATCCATAACAGCCTTTGGTCAGCTTATATGCTAATGGCAGGAGTGGCTACTTCTCGGCTTGGGTTGTGGATGTTTGATTTGGCTGTCATCCAACAAATGCAGGATCAAGTTCCTGAATCAGATCGTTGTGTAGTGGGAGGTGTTCAAAACTCCCTTCAGTCCAGCATGGATTTGATGGGCTATGTCATGGGAATAATCATATCTAATCCACAGGAATTCTGGAAGTTGACTTTGGTTTCGTTTGCCGTGGCAACAGTGGCTGCATTGCTCTATACCCTGCACCTCTACCGCGTCCGAAAGCACCTCCTTCACTTGGAGAAATTAACCGCCTTTCTGAAATGCTTCCCCAGTTCACAATCTGAAAATTCATAA

Protein Analysis

433

Amino Acids

48.05

Weight (kDa)

5.89

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 12 - 392 1.9e-130 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 775
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 1221
AciI CCGC 2 cut(s) 1219, 1257
AclWI GGATC 6 cut(s) 569, 625, 638, 925, 938, 1041
AcsI RAATTY 5 cut(s) 136, 286, 813, 1145, 1294
AcuI CTGAAG 1 cut(s) 1070
AfaI GTAC 4 cut(s) 214, 273, 678, 717
AfeI AGCGCT 1 cut(s) 802
AfiI CCNNNNNNNGG 4 cut(s) 464, 753, 876, 1243
AgsI TTSAA 5 cut(s) 142, 227, 515, 924, 1076
AjnI CCWGG 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 1145, 1177
Alw21I GWGCWC 2 cut(s) 187, 331
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 6 cut(s) 569, 625, 638, 925, 938, 1041
AlwNI CAGNNNCTG 1 cut(s) 1190
Aor51HI AGCGCT 1 cut(s) 802
ApeKI GCWGC 4 cut(s) 549, 664, 803, 1190
ApoI RAATTY 5 cut(s) 136, 286, 813, 1145, 1294
ArsI GACNNNNNNTTYG 4 cut(s) 27, 59, 1150, 1182
Asp700I GAANNNNTTC 1 cut(s) 1271
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 2 cut(s) 292, 897
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 2 cut(s) 292, 897
AxyI CCTNAGG 1 cut(s) 296
BamHI GGATCC 2 cut(s) 630, 930
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 187
BauI CACGAG 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 187, 331
BbvI GCAGC 4 cut(s) 561, 676, 790, 1177
BccI CCATC 4 cut(s) 94, 224, 845, 1099
BceAI ACGGC 1 cut(s) 1160
BciT130I CCWGG 1 cut(s) 684
BcoDI GTCTC 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 121
BisI GCNGC 4 cut(s) 550, 665, 804, 1191
BlsI GCNGC 4 cut(s) 551, 666, 805, 1192
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 2 cut(s) 292, 897
BmgT120I GGNCC 2 cut(s) 292, 897
BmiI GGNNCC 4 cut(s) 91, 214, 632, 932
BmrFI CCNGG 1 cut(s) 684
BmrI ACTGGG 3 cut(s) 244, 615, 1272
BmuI ACTGGG 3 cut(s) 244, 615, 1272
BoxI GACNNNNGTC 1 cut(s) 877
BpmI CTGGAG 3 cut(s) 201, 249, 705
Bpu10I CCTNAGC 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 682, 747, 1176
BsaWI WCCGGW 1 cut(s) 869
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 4 cut(s) 464, 753, 876, 1243
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 4 cut(s) 239, 431, 610, 1278
Bse21I CCTNAGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 1193
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 3 cut(s) 682, 747, 1176
BseGI GGATG 2 cut(s) 1005, 1017
BseLI CCNNNNNNNGG 4 cut(s) 464, 753, 876, 1243
BseMI GCAATG 1 cut(s) 1193
BseMII CTCAG 3 cut(s) 515, 534, 733
BseNI ACTGG 4 cut(s) 239, 431, 610, 1278
BseRI GAGGAG 1 cut(s) 559
BseXI GCAGC 4 cut(s) 561, 676, 790, 1177
BsgI GTGCAG 1 cut(s) 1193
Bsh1236I CGCG 1 cut(s) 1221
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 187, 331
BsiSI CCGG 4 cut(s) 87, 342, 458, 870
BslI CCNNNNNNNGG 4 cut(s) 464, 753, 876, 1243
BsmAI GTCTC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 187, 331
Bsp143I GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
BspACI CCGC 2 cut(s) 1219, 1257
BspCNI CTCAG 4 cut(s) 4, 514, 533, 732
BspFNI CGCG 1 cut(s) 1221
BspLI GGNNCC 4 cut(s) 91, 214, 632, 932
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 6 cut(s) 569, 625, 638, 925, 938, 1041
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 1193
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 4 cut(s) 239, 431, 610, 1278
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 682, 747, 1176
BssMI GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 789
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 5 cut(s) 97, 622, 715, 826, 1186
BstC8I GCNNGC 2 cut(s) 554, 846
BstDEI CTNAG 7 cut(s) 12, 220, 296, 501, 520, 719, 863
BstDSI CCRYGG 1 cut(s) 1176
BstEII GGTNACC 1 cut(s) 337
BstF5I GGATG 2 cut(s) 1005, 1017
BstFNI CGCG 1 cut(s) 1221
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 9 cut(s) 114, 124, 310, 511, 577, 633, 933, 1036, 1054
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 974, 1187
BstNI CCWGG 1 cut(s) 684
BstPAI GACNNNNGTC 1 cut(s) 877
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 682
BstUI CGCG 1 cut(s) 1221
BstV1I GCAGC 4 cut(s) 561, 676, 790, 1177
BstX2I RGATCY 3 cut(s) 121, 630, 930
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 3 cut(s) 121, 630, 930
Bsu36I CCTNAGG 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 1176
BtsCI GGATG 2 cut(s) 1005, 1017
BtsIMutI CAGTG 3 cut(s) 711, 899, 1191
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 2 cut(s) 554, 846
CaiI CAGNNNCTG 1 cut(s) 1190
CfoI GCGC 1 cut(s) 803
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 292, 897
CseI GACGC 1 cut(s) 1210
Csp6I GTAC 4 cut(s) 213, 272, 677, 716
CviAII CATG 3 cut(s) 283, 1096, 1117
CviQI GTAC 4 cut(s) 213, 272, 677, 716
DdeI CTNAG 7 cut(s) 12, 220, 296, 501, 520, 719, 863
DpnI GATC 9 cut(s) 113, 123, 309, 510, 576, 632, 932, 1035, 1053
DpnII GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
DraI TTTAAA 2 cut(s) 7, 562
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 187
Eco32I GATATC 2 cut(s) 249, 489
Eco47I GGWCC 2 cut(s) 292, 897
Eco47III AGCGCT 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 1070
Eco81I CCTNAGG 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 337
EcoRI GAATTC 2 cut(s) 286, 1145
EcoRII CCWGG 1 cut(s) 682
EcoRV GATATC 2 cut(s) 249, 489
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 3 cut(s) 286, 1099, 1120
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 3 cut(s) 282, 1095, 1116
Fnu4HI GCNGC 4 cut(s) 550, 665, 804, 1191
FokI GGATG 2 cut(s) 1004, 1012
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 550, 665, 804, 1191
GlaI GCGC 1 cut(s) 802
GluI GCNGC 4 cut(s) 550, 665, 804, 1191
GsuI CTGGAG 3 cut(s) 201, 249, 705
HaeII RGCGCY 1 cut(s) 804
HapII CCGG 4 cut(s) 87, 342, 458, 870
HgaI GACGC 1 cut(s) 1210
HhaI GCGC 1 cut(s) 803
Hin1II CATG 3 cut(s) 286, 1099, 1120
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HincII GTYRAC 1 cut(s) 1158
HindII GTYRAC 1 cut(s) 1158
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 4 cut(s) 40, 454, 873, 1046
HpaII CCGG 4 cut(s) 87, 342, 458, 870
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 3 cut(s) 897, 1158, 1283
Hpy188I TCNGA 7 cut(s) 13, 253, 504, 1051, 1226, 1266, 1291
Hpy188III TCNNGA 9 cut(s) 180, 266, 397, 492, 512, 539, 578, 1043, 1150
Hpy8I GTNNAC 3 cut(s) 897, 1158, 1283
HpyAV CCTTC 7 cut(s) 248, 507, 509, 752, 910, 1094, 1247
HpyCH4III ACNGT 5 cut(s) 97, 622, 715, 826, 1186
HpyCH4V TGCA 9 cut(s) 146, 664, 770, 806, 821, 844, 1030, 1193, 1210
HpyF10VI GCNNNNNNNGC 2 cut(s) 974, 1187
HpyF3I CTNAG 7 cut(s) 12, 220, 296, 501, 520, 719, 863
Hsp92II CATG 3 cut(s) 286, 1099, 1120
HspAI GCGC 1 cut(s) 801
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
LmnI GCTCC 4 cut(s) 89, 182, 334, 546
Lsp1109I GCAGC 4 cut(s) 561, 676, 790, 1177
MaeIII GTNAC 3 cut(s) 58, 105, 337
MalI GATC 9 cut(s) 113, 123, 309, 510, 576, 632, 932, 1035, 1053
MboI GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
MboII GAAGA 4 cut(s) 35, 496, 522, 525
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 3 cut(s) 121, 630, 930
MhlI GDGCHC 2 cut(s) 187, 331
MluCI AATT 8 cut(s) 136, 286, 581, 807, 813, 1145, 1250, 1294
MlyI GAGTC 1 cut(s) 867
MmeI TCCRAC 1 cut(s) 1045
MnlI CCTC 6 cut(s) 537, 583, 914, 1061, 1223, 1244
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 1271
MseI TTAA 7 cut(s) 6, 167, 383, 561, 615, 857, 1253
MslI CAYNNNNRTG 2 cut(s) 98, 440
MspI CCGG 4 cut(s) 87, 342, 458, 870
MspR9I CCNGG 1 cut(s) 684
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 1221
MwoI GCNNNNNNNGC 2 cut(s) 974, 1187
NdeII GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
NlaIII CATG 3 cut(s) 286, 1099, 1120
NlaIV GGNNCC 4 cut(s) 91, 214, 632, 932
NmeAIII GCCGAG 1 cut(s) 964
NsiI ATGCAT 1 cut(s) 148
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 1271
PfeI GAWTC 3 cut(s) 40, 454, 1046
PkrI GCNGC 4 cut(s) 551, 666, 805, 1192
PleI GAGTC 1 cut(s) 867
PpsI GAGTC 1 cut(s) 867
PshAI GACNNNNGTC 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 4 cut(s) 91, 214, 632, 932
PspPI GGNCC 2 cut(s) 292, 897
PstNI CAGNNNCTG 1 cut(s) 1190
PsuI RGATCY 3 cut(s) 121, 630, 930
RsaI GTAC 4 cut(s) 214, 273, 678, 717
RsaNI GTAC 4 cut(s) 213, 272, 677, 716
RseI CAYNNNNRTG 2 cut(s) 98, 440
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 7 cut(s) 6, 167, 383, 561, 615, 857, 1253
SatI GCNGC 4 cut(s) 550, 665, 804, 1191
Sau3AI GATC 9 cut(s) 111, 121, 307, 508, 574, 630, 930, 1033, 1051
Sau96I GGNCC 2 cut(s) 292, 897
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 867
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 2 cut(s) 187, 331
SinI GGWCC 2 cut(s) 292, 897
SmiMI CAYNNNNRTG 2 cut(s) 98, 440
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
Sse9I AATT 8 cut(s) 136, 286, 581, 807, 813, 1145, 1250, 1294
SsiI CCGC 2 cut(s) 1219, 1257
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 5 cut(s) 97, 622, 715, 826, 1186
TaqI TCGA 1 cut(s) 46
TaqII GACCGA 1 cut(s) 280
TasI AATT 8 cut(s) 136, 286, 581, 807, 813, 1145, 1250, 1294
TatI WGTACW 3 cut(s) 271, 676, 715
TfiI GAWTC 3 cut(s) 40, 454, 1046
Tru1I TTAA 7 cut(s) 6, 167, 383, 561, 615, 857, 1253
Tru9I TTAA 7 cut(s) 6, 167, 383, 561, 615, 857, 1253
TscAI CASTG 3 cut(s) 718, 899, 1191
TseI GCWGC 4 cut(s) 549, 664, 803, 1190
TspDTI ATGAA 5 cut(s) 299, 337, 424, 582, 1287
TspRI CASTG 3 cut(s) 718, 899, 1191
VpaK11BI GGWCC 2 cut(s) 292, 897
XapI RAATTY 5 cut(s) 136, 286, 813, 1145, 1294
XcmI CCANNNNNNNNNTGG 1 cut(s) 1146
XmnI GAANNNNTTC 1 cut(s) 1271
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.