Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Reverse (-)

3985192 .. 3986631

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCAAGGCCCAACCGAGACATGCATCGTGTAGCCCTATGTTCAGGCTACGCGGCGGTATCCGGAAGTCGCAAATCCGCCACCGGGAAGCCACCTTCCCGCCCTTGCCAAGACGCCTCCACAACATGGCTTTCTACATGCTTCTTGAAACTAGCTAGAAATATATGGTTGCTTGTCCCACATCGAAGAACATGCCGCAAGGCTCGACACACACTAGTTAAACTTTCAAGTGGACGTAGTCTCCCGCAAAGGCGGGAGATTATCTTGATGAGTGGGATAAGCAAGAATGGTTTAGAGGAGCTGTCATCTGAAAGAAGCTCTGATGATCGCATACCTCATATCTGCAATATCATTAGATATGGAAAGGATGTTGCGAAACATGATCTGCAGAACTGCAAGAACTGGAATCGTTTTCTTAAGGATGAGCTTGTTGGCAGCTTTACCTTCAACCCTTTGCTGAAAGCATTGATAAATGAATGGCTTCAGTGGTGTGATACTAAGTCTTACAGATTTGATTTTGTACTCATCTTATCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

179

Amino Acids

20.52

Weight (kDa)

10.0

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	7 cut(s)	53, 56, 78, 100, 196, 245, 253
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	84, 126
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	148, 228, 448
AhlI	ACTAGT	1 cut(s)	214
AluBI	AGCT	5 cut(s)	155, 301, 318, 427, 438
AluI	AGCT	5 cut(s)	155, 301, 318, 427, 438
Alw26I	GTCTC	2 cut(s)	12, 245
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	12, 245
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	3 cut(s)	152, 156, 215
BfmI	CTRYAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	54, 196, 436
BlsI	GCNGC	3 cut(s)	55, 197, 437
Bme1390I	CCNGG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 126
Bse1I	ACTGG	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	62
BseGI	GGATG	2 cut(s)	373, 427
BseLI	CCNNNNNNNGG	2 cut(s)	84, 126
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	63, 84
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	84, 126
BsmAI	GTCTC	2 cut(s)	12, 245
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	325, 382
BspACI	CCGC	7 cut(s)	53, 56, 78, 100, 196, 245, 253
BspANI	GGCC	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	390
BspTI	CTTAAG	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	407
BssMI	GATC	2 cut(s)	325, 382
BssNI	GRCGYC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	373, 427
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	328, 385
BstMAI	GTCTC	2 cut(s)	12, 245
BstMBI	GATC	2 cut(s)	325, 382
BstNSI	RCATGY	3 cut(s)	25, 141, 195
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	373, 427
BtsIMutI	CAGTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	5 cut(s)	22, 126, 138, 192, 380
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	327, 384
DpnII	GATC	2 cut(s)	325, 382
EciI	GGCGGA	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	5 cut(s)	25, 129, 141, 195, 383
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	21, 125, 137, 191, 379
FauI	CCCGC	3 cut(s)	107, 246, 252
Fnu4HI	GCNGC	3 cut(s)	54, 196, 436
FokI	GGATG	2 cut(s)	380, 434
Fsp4HI	GCNGC	3 cut(s)	54, 196, 436
FspBI	CTAG	3 cut(s)	152, 156, 215
GluI	GCNGC	3 cut(s)	54, 196, 436
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	63, 84
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	25, 129, 141, 195, 383
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	2 cut(s)	63, 84
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	310, 322
Hpy188III	TCNNGA	3 cut(s)	63, 145, 265
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	105, 454
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	25, 345, 388, 396
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	25, 129, 141, 195, 383
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	325, 382
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	4 cut(s)	30, 76, 97, 388
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	3 cut(s)	152, 156, 215
MaeII	ACGT	1 cut(s)	235
MalI	GATC	2 cut(s)	327, 384
MboI	GATC	2 cut(s)	325, 382
MboII	GAAGA	1 cut(s)	198
MnlI	CCTC	3 cut(s)	127, 289, 345
Mph1103I	ATGCAT	1 cut(s)	27
MroI	TCCGGA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	3 cut(s)	219, 417, 538
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	2 cut(s)	63, 84
MspR9I	CCNGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	325, 382
NlaIII	CATG	5 cut(s)	25, 129, 141, 195, 383
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	3 cut(s)	25, 141, 195
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	55, 197, 437
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	237
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	219, 417, 538
SatI	GCNGC	3 cut(s)	54, 196, 436
Sau3AI	GATC	2 cut(s)	325, 382
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	9 cut(s)	97, 157, 238, 303, 320, 337, 429, 440, 446
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	214
SsiI	CCGC	7 cut(s)	53, 56, 78, 100, 196, 245, 253
SspMI	CTAG	3 cut(s)	152, 156, 215
StyD4I	CCNGG	1 cut(s)	83
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	184, 205
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	2 cut(s)	56, 198
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	219, 417, 538
Tru9I	TTAA	3 cut(s)	219, 417, 538
TscAI	CASTG	1 cut(s)	491
TseI	GCWGC	1 cut(s)	435
TspDTI	ATGAA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	491
Tth111I	GACNNNGTC	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	416
XceI	RCATGY	3 cut(s)	25, 141, 195
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	3 cut(s)	152, 156, 215
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.