Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Reverse (-)

3986934 .. 3990384

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTCCCCTACTTGGATTCGGCAGGAGTAGACATAGCCTTGCCGCGATGGTCATGCACGGCCATTGCGGCGGCCTTTGCTTCCGACCAGAGACAGTACCAAGTTGTTCTTATCACACATTCAGCTCACGAGAGCTTACGTTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCGCTGCAGAAAAAGTTGTTTTCTGGAGAACATAGAAAAGAATGTCTTTCGGTAGTTGAAACGATATTTGGATCAGGCCCAAGCATGGATGGTGATTTCATTGTGATAAATTTCTTTGCTCTGTTACCATCAAAGAGCTTGATTACTACACATATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

135

Amino Acids

14.8

Weight (kDa)

6.35

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	46
AciI	CCGC	3 cut(s)	44, 68, 71
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	13, 331
AgsI	TTSAA	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	125, 135, 384
AluI	AGCT	3 cut(s)	125, 135, 384
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	60, 72, 322
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	4, 323
AsuHPI	GGTGA	2 cut(s)	177, 350
AvaII	GGWCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	4 cut(s)	42, 213, 329, 382
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BcoDI	GTCTC	1 cut(s)	85
BfmI	CTRYAG	3 cut(s)	222, 231, 251
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	44, 69, 72, 251
BlsI	GCNGC	4 cut(s)	45, 70, 73, 252
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 323
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 331
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	13, 331
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	62, 74, 324
BslI	CCNNNNNNNGG	2 cut(s)	13, 331
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	62, 74, 324
Bsp143I	GATC	1 cut(s)	317
BspACI	CCGC	3 cut(s)	44, 68, 71
BspANI	GGCC	3 cut(s)	62, 74, 324
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 247
BstSFI	CTRYAG	3 cut(s)	222, 231, 251
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	62, 74, 324
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	4, 323
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	54, 215, 331
CviJI	RGCY	9 cut(s)	38, 62, 74, 125, 135, 152, 228, 324, 384
CviKI_1	RGCY	9 cut(s)	38, 62, 74, 125, 135, 152, 228, 324, 384
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	3 cut(s)	57, 218, 334
FaiI	YATR	6 cut(s)	35, 55, 216, 279, 332, 399
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 276, 308
FatI	CATG	3 cut(s)	53, 214, 330
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	44, 69, 72, 251
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	4 cut(s)	44, 69, 72, 251
GluI	GCNGC	4 cut(s)	44, 69, 72, 251
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	62, 74, 324
Hin1II	CATG	3 cut(s)	57, 218, 334
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	177, 350
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	85, 210
Hpy188III	TCNNGA	2 cut(s)	128, 270
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	57, 253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 247
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	57, 218, 334
Kzo9I	GATC	1 cut(s)	317
LpnPI	CCDG	6 cut(s)	9, 101, 204, 210, 255, 306
Lsp1109I	GCAGC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	143, 369
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	2 cut(s)	164, 169
MluCI	AATT	2 cut(s)	177, 355
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	1 cut(s)	252
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 247
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	57, 218, 334
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	45, 70, 73, 252
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 323
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SatI	GCNGC	4 cut(s)	44, 69, 72, 251
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	2 cut(s)	4, 323
SetI	ASST	5 cut(s)	127, 137, 142, 193, 386
SfcI	CTRYAG	3 cut(s)	222, 231, 251
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	177, 355
SsiI	CCGC	3 cut(s)	44, 68, 71
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	142
TasI	AATT	2 cut(s)	177, 355
TauI	GCSGC	3 cut(s)	46, 71, 74
TfiI	GAWTC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	171, 334
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.