Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

5122708 .. 5150831

Gene Structure 28124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG038100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGGCGTATTGATCTGTTCTGCAAGCTCTGTGCTCCTGTCCTAACCGGATTAATTATCAGCTTCGTATCATTAGAAGCTTCTGCTTTCACTTTAGCACTCTGGAATACTATATCTATTTGGCTGGAATATTGGCTATTTACTTCTGTATACAAGGGGATTCCGGCTTTAGGTGAAAGCGGCCAAAGGAAGTTATCAAGATATTTAGAGAGAGATCAGAATGAGACAAGAAGTAACTTGCTTTCCAGTGAAGATGAAGATGATGTAGAAATTTCCCAAGAAAGCTGGATAAAGAGAAGAATTAAACAGTTCTCAAGGATTCCATATGTTAGTGCATGGCGAGTATACTTGCAGCAAGATGTGGTACTCCCGGGTGTAGCTCTGGCTTTGTTATATTTCACTGTCCTCAGGTTTGGAACATTAATGACAGCTACCTTGGAATGGGAAGGTATACCTGCATACATAATTGGAATAGTGCGTGGAGTAAGCGCTGGAGTTGGAATTGCTGCAACAGTGGTTTATCCAATCTTGCAATCTCATATCTTAACACTTAGAACTGGACTCTGGTCCATCTGGTCTCAGTGGACATTCCTTCTACTATGTGTTGGTTCAATATGGGTCCCCAATAGAGTTTTGTCAGCATGTATGCTGATGGCAGGAGTAGGTACTTCTCGGCTTGGATTATGGATGTTTGACTTGGCAGTAATCCAACAAATGCAGGATCAAGTTCCTGAATTGGAACGTTGTGTAGTGGGAGGTGTTCAAAGCTCCCTTCAGTCTAGTATGGATTTGATGGGGTATGTCATGGCAATAATTATATCTAATCCACAGGATTTCTGGAAGTTGACTCTGGTGTCGTTCGGGGTGGTAACATTGGCTGCATTGCTCTACACCCTACACCTTTACCGTGTCCGGAAGCACCTCCTTCACTTTGAGAAACTTACTCCGTTTCTTAAGTGCATTACTAGATCACAATCTGCAAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

329

Amino Acids

37.22

Weight (kDa)

8.71

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPN1	PF06963	1 - 290	1.2e-100	Ferroportin1 (FPN1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	853
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	3 cut(s)	150, 345, 451
AccIII	TCCGGA	1 cut(s)	912
AciI	CCGC	1 cut(s)	180
AclI	AACGTT	1 cut(s)	742
AclWI	GGATC	1 cut(s)	729
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	758
AfaI	GTAC	2 cut(s)	366, 667
AfeI	AGCGCT	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	170, 441
AflII	CTTAAG	1 cut(s)	953
AgsI	TTSAA	2 cut(s)	612, 764
AluBI	AGCT	7 cut(s)	28, 63, 80, 285, 380, 431, 768
AluI	AGCT	7 cut(s)	28, 63, 80, 285, 380, 431, 768
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	218, 582
AlwI	GGATC	1 cut(s)	729
Ama87I	CYCGRG	1 cut(s)	370
Aor13HI	TCCGGA	1 cut(s)	912
Aor51HI	AGCGCT	1 cut(s)	490
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	352, 506, 878
ApoI	RAATTY	1 cut(s)	270
AseI	ATTAAT	2 cut(s)	53, 422
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	567, 619
AsuC2I	CCSGG	2 cut(s)	371, 372
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	567, 619
AxyI	CCTNAGG	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	364, 493, 865
BccI	CCATC	3 cut(s)	578, 646, 787
BcnI	CCSGG	2 cut(s)	371, 372
BcoDI	GTCTC	2 cut(s)	218, 582
BfaI	CTAG	2 cut(s)	780, 966
BfoI	RGCGCY	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	4 cut(s)	181, 353, 507, 879
BlsI	GCNGC	4 cut(s)	182, 354, 508, 880
Bme1390I	CCNGG	2 cut(s)	371, 372
Bme18I	GGWCC	2 cut(s)	567, 619
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	567, 619
BmiI	GGNNCC	2 cut(s)	620, 621
BmrFI	CCNGG	2 cut(s)	371, 372
BoxI	GACNNNNGTC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	298
BpuMI	CCSGG	2 cut(s)	371, 372
BsaBI	GATNNNNATC	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	370, 435
BsaWI	WCCGGW	2 cut(s)	47, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 441
Bse1I	ACTGG	2 cut(s)	246, 562
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	881
Bse8I	GATNNNNATC	1 cut(s)	973
BseAI	TCCGGA	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	370, 435
BseGI	GGATG	1 cut(s)	693
BseJI	GATNNNNATC	1 cut(s)	973
BseLI	CCNNNNNNNGG	2 cut(s)	170, 441
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	2 cut(s)	421, 593
BseNI	ACTGG	2 cut(s)	246, 562
BseXI	GCAGC	3 cut(s)	364, 493, 865
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	4 cut(s)	48, 164, 371, 913
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	2 cut(s)	170, 441
BsmAI	GTCTC	2 cut(s)	218, 582
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	582
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	912
Bsp143I	GATC	4 cut(s)	13, 214, 721, 968
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	420, 592
BspEI	TCCGGA	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	620, 621
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	729
BspTI	CTTAAG	1 cut(s)	953
BspTNI	GGTCTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	881
BsrI	ACTGG	2 cut(s)	246, 562
BssECI	CCNNGG	2 cut(s)	370, 435
BssMI	GATC	4 cut(s)	13, 214, 721, 968
BssNAI	GTATAC	3 cut(s)	151, 346, 452
BssT1I	CCWWGG	1 cut(s)	435
Bst1107I	GTATAC	3 cut(s)	151, 346, 452
Bst4CI	ACNGT	4 cut(s)	309, 403, 514, 908
BstAFI	CTTAAG	1 cut(s)	953
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	407, 551, 579
BstF5I	GGATG	1 cut(s)	693
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	4 cut(s)	16, 217, 724, 971
BstMAI	GTCTC	2 cut(s)	218, 582
BstMBI	GATC	4 cut(s)	13, 214, 721, 968
BstNSI	RCATGY	1 cut(s)	645
BstPAI	GACNNNNGTC	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	369, 370
BstV1I	GCAGC	3 cut(s)	364, 493, 865
BstZ17I	GTATAC	3 cut(s)	151, 346, 452
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	693
BtsIMutI	CAGTG	4 cut(s)	253, 399, 519, 587
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	567, 619
Cfr9I	CCCGGG	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	365, 666
CviAII	CATG	3 cut(s)	336, 642, 805
CviQI	GTAC	2 cut(s)	365, 666
DdeI	CTNAG	3 cut(s)	407, 551, 579
DpnI	GATC	4 cut(s)	15, 216, 723, 970
DpnII	GATC	4 cut(s)	13, 214, 721, 968
DrdI	GACNNNNNNGTC	1 cut(s)	853
DseDI	GACNNNNNNGTC	1 cut(s)	853
EaeI	YGGCCR	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	567, 619
Eco47III	AGCGCT	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	758
Eco81I	CCTNAGG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	3 cut(s)	339, 645, 808
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	3 cut(s)	335, 641, 804
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	3 cut(s)	150, 345, 451
Fnu4HI	GCNGC	4 cut(s)	181, 353, 507, 879
FokI	GGATG	1 cut(s)	700
Fsp4HI	GCNGC	4 cut(s)	181, 353, 507, 879
FspBI	CTAG	2 cut(s)	780, 966
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	4 cut(s)	181, 353, 507, 879
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	4 cut(s)	48, 164, 371, 913
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	339, 645, 808
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	4 cut(s)	160, 319, 561, 847
HpaII	CCGG	4 cut(s)	48, 164, 371, 913
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	5 cut(s)	151, 346, 452, 585, 846
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	5 cut(s)	103, 198, 731, 838, 913
Hpy8I	GTNNAC	5 cut(s)	151, 346, 452, 585, 846
HpyAV	CCTTC	4 cut(s)	440, 602, 782, 935
HpyCH4III	ACNGT	4 cut(s)	309, 403, 514, 908
HpyCH4IV	ACGT	1 cut(s)	742
HpyF3I	CTNAG	3 cut(s)	407, 551, 579
HpySE526I	ACGT	1 cut(s)	742
Hsp92II	CATG	3 cut(s)	339, 645, 808
HspAI	GCGC	1 cut(s)	489
KflI	GGGWCCC	1 cut(s)	619
Kpn2I	TCCGGA	1 cut(s)	912
Kzo9I	GATC	4 cut(s)	13, 214, 721, 968
LmnI	GCTCC	2 cut(s)	40, 773
Lsp1109I	GCAGC	3 cut(s)	364, 493, 865
MaeI	CTAG	2 cut(s)	780, 966
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	2 cut(s)	233, 868
MalI	GATC	4 cut(s)	15, 216, 723, 970
MboI	GATC	4 cut(s)	13, 214, 721, 968
MboII	GAAGA	3 cut(s)	263, 269, 309
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	7 cut(s)	54, 270, 300, 465, 501, 734, 813
MlyI	GAGTC	2 cut(s)	555, 841
MmeI	TCCRAC	2 cut(s)	478, 733
MnlI	CCTC	3 cut(s)	416, 749, 932
MroI	TCCGGA	1 cut(s)	912
MseI	TTAA	5 cut(s)	53, 303, 422, 545, 954
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	4 cut(s)	48, 164, 371, 913
MspR9I	CCNGG	2 cut(s)	371, 372
NciI	CCSGG	2 cut(s)	371, 372
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	4 cut(s)	13, 214, 721, 968
NlaIII	CATG	3 cut(s)	339, 645, 808
NlaIV	GGNNCC	2 cut(s)	620, 621
NmeAIII	GCCGAG	1 cut(s)	652
NspI	RCATGY	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	160, 319
PkrI	GCNGC	4 cut(s)	182, 354, 508, 880
PleI	GAGTC	2 cut(s)	555, 841
PpsI	GAGTC	2 cut(s)	555, 841
PpuMI	RGGWCCY	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	565
PshBI	ATTAAT	2 cut(s)	53, 422
Psp1406I	AACGTT	1 cut(s)	742
Psp5II	RGGWCCY	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	620, 621
PspPI	GGNCC	2 cut(s)	567, 619
PspPPI	RGGWCCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	366, 667
RsaNI	GTAC	2 cut(s)	365, 666
SaqAI	TTAA	5 cut(s)	53, 303, 422, 545, 954
SatI	GCNGC	4 cut(s)	181, 353, 507, 879
Sau3AI	GATC	4 cut(s)	13, 214, 721, 968
Sau96I	GGNCC	2 cut(s)	567, 619
SchI	GAGTC	2 cut(s)	555, 841
ScrFI	CCNGG	2 cut(s)	371, 372
SduI	GDGCHC	1 cut(s)	37
SinI	GGWCC	2 cut(s)	567, 619
SmaI	CCCGGG	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	313, 953
SmoI	CTYRAG	2 cut(s)	313, 953
Sse9I	AATT	7 cut(s)	54, 270, 300, 465, 501, 734, 813
SsiI	CCGC	1 cut(s)	180
SspI	AATATT	1 cut(s)	131
SspMI	CTAG	2 cut(s)	780, 966
StyD4I	CCNGG	2 cut(s)	369, 370
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	4 cut(s)	309, 403, 514, 908
TaiI	ACGT	1 cut(s)	745
TasI	AATT	7 cut(s)	54, 270, 300, 465, 501, 734, 813
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	160, 319
Tru1I	TTAA	5 cut(s)	53, 303, 422, 545, 954
Tru9I	TTAA	5 cut(s)	53, 303, 422, 545, 954
TscAI	CASTG	4 cut(s)	253, 406, 519, 587
TseI	GCWGC	3 cut(s)	352, 506, 878
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	936
TspMI	CCCGGG	1 cut(s)	370
TspRI	CASTG	4 cut(s)	253, 406, 519, 587
Vha464I	CTTAAG	1 cut(s)	953
VpaK11BI	GGWCC	2 cut(s)	567, 619
VspI	ATTAAT	2 cut(s)	53, 422
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XmaI	CCCGGG	1 cut(s)	370
XmiI	GTMKAC	3 cut(s)	150, 345, 451
XspI	CTAG	2 cut(s)	780, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.