Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

70973220 .. 70974792

Gene Structure 1573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0523800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAATCAAGAGATCGTTGCTGCCAGAGCTCAAGTCTCAACACCCGCCCGAAACCCGTTCCCTATGCAACTGAAAGTTGAACCTCGAGAGGAGGATCAAGCAGGTTTTCAAATAAAGATGTTCACTGAAAAGAGTTGCAGTGGGTTGCTTGTTTTCGTATTGGAAGCTTTTGAAGAGTTAGGCCTAGATGTTCTTCAAGCTAGGGTTTCTTGCTCCAACAATTTTCTTTTAGAAGCAGTGGCCACAATTAACAATGACGACCAAAATGGTGATGATCATAACAAAGATGCCGAGGTAGTAAGAAAAGCGATGCTGAAAGCCATTCAAAGCTGGAGTGAAGTTTCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

4.61

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	25 - 109	1.6e-18	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	240
AgsI	TTSAA	5 cut(s)	80, 110, 173, 197, 326
AluBI	AGCT	4 cut(s)	29, 167, 200, 330
AluI	AGCT	4 cut(s)	29, 167, 200, 330
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	181, 240
ApeKI	GCWGC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	2 cut(s)	185, 201
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	277, 300
BpuEI	CTTGAG	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	2 cut(s)	183, 242
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	183, 242
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	12, 94, 274
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	183, 242
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	12, 94, 274
Bst6I	CTCTTC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	15, 97, 277
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	3 cut(s)	12, 94, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	183, 242
BtgZI	GCGATG	1 cut(s)	323
BtsI	GCAGTG	2 cut(s)	145, 243
BtsIMutI	CAGTG	3 cut(s)	123, 145, 243
BveI	ACCTGC	1 cut(s)	92
CviJI	RGCY	7 cut(s)	29, 167, 183, 200, 242, 320, 330
CviKI_1	RGCY	7 cut(s)	29, 167, 183, 200, 242, 320, 330
DpnI	GATC	3 cut(s)	14, 96, 276
DpnII	GATC	3 cut(s)	12, 94, 274
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	29
Eco147I	AGGCCT	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	31
FaiI	YATR	2 cut(s)	65, 279
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	185, 201
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	183, 242
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	8, 86
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	67, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	12, 94, 274
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	3 cut(s)	37, 87, 316
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	277, 300
MaeI	CTAG	2 cut(s)	185, 201
MalI	GATC	3 cut(s)	14, 96, 276
MboI	GATC	3 cut(s)	12, 94, 274
MboII	GAAGA	2 cut(s)	185, 185
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	220, 246
MluNI	TGGCCA	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	82, 85, 93, 286
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	12, 94, 274
NmeAIII	GCCGAG	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	3 cut(s)	12, 94, 274
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	7 cut(s)	31, 85, 106, 169, 202, 297, 332
SfaNI	GCATC	2 cut(s)	277, 300
Sfr274I	CTCGAG	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	30, 84
SmoI	CTYRAG	2 cut(s)	30, 84
Sse9I	AATT	2 cut(s)	220, 246
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	185, 201
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	220, 246
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	3 cut(s)	130, 145, 243
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	130, 145, 243
XhoI	CTCGAG	1 cut(s)	84
XspI	CTAG	2 cut(s)	185, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.