Rroxscaffold_6G00418610

Solute carrier family 40 member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
40187575 .. 40191416
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418610.1

Sequence Viewer

Length: 1548 bp
ATGAAGCAGGAGGAAGAGCGCCTTCTAGTCCATGTACAAGAATACCCTTCTGATGATTCTCAATATGATCCTCTTCCTTCAATTCTTGTCAAATATCTTTATCTAGGCCACTTTTTGGCCAGATGGGGTGCCAGAATGTGGGAATTCTCTGTTGGTTTATACATGATAAATGTATGGCCAGACTCTCTACTCTTTGCTGCTATATATGGTGTGGTGGAATCAGCCTCTACTGCGCTTTTTGGACCTTTGGTCGGACGGTGGGTGGATAGATTCTCATATTTAAAGATTCTTCGAGTTTGGTTAGTAACACAAAATCTCTCTTTTATGATTGCCGGAGCCACCGTGATGGCGTTACTGATCTACCCAGATCTAAAGCTCACAAATTTCAATGCATTTGTTTTACTTATCATATTAACCAACATCTCTGGAGCTCTTGGAGTTCTCTCCACTCTTGCTGGTACCATCTTAGTTGAAAGAGACTGGGTTGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTAACAAACATGAATTCGGTCGTTAGGCGTATTGATCTTTTCTCCAAGCTATGTGCTCCTGTGGTAACCGGCTTCATCATCAGCTTTGTATCACTAAAAGCTTCTGCTTTAACTTTAGCACTCTGGAATACTATATCTGTTTGGCTGGAATACTGGCTATTCATTTCTGTGTATAATGGGATTCCAGCTTTAGGCGAAAGCAGCCAAAGGAAGATATCAAGACCTTCTCAGAGTGATCTTGAAGGCACTGGCACATCTACCTCTCAAGAGAGGAGCAGCTTGCTTTTTAAAGATGAAAATGATCCAGAATTCGCAGAGGAAAGCTGGATTACTGGGCTTATTAAAACGGTATCAAGGATCCCTTATGTTAGTGCTTGGAGTGTGTATTTGAAGCAAGAAGTTGTACTCCCTGGAGTGTCTCTGGCTTTGTTATACTTCACTGTACTCAGCTTTGGAACATTGATGACAGCTACCTTGGAATGGGAAGGCATACCTGCATACACCATAGGGATAGCTCGTGGAATAAGCGCTGCAATTGGAATTACTGCAACAATTGTTTATCCCATCTTGCAATCTCATATCTTAACACTTAGAACCGGACTCTGGTCTATCTGGTCTCAGTGGACCTTCCTCATATTATGTGTTGCTTCAATATGGATCCATAAGAGAATTTGGTCAGCATATATGCTAATGGCAGGAGTGGCTACTTCTCGGCTTGGGTTGTGGATGTTTGATTTGGCTGTCATCCAACAAATGCAGGATCAAGTTCCTGAATCAGATCGTTGTGTAGTGGGAGGTGTTCAAAACTCCCTTCAGTCCAGCATGGATTTGATGGGCTATGTCATGGGAATAATCATATCTAATCCACAGGAATTCTGGAAGTTGACTTTGGTCTCGTTTGCCGTGGCAACATTGGCTGCATTGCTCTATACCCTGCACCTCTACCGCGTCCGAAAGCACCTCCTTCACTTGGAGAAATTAACCGCCTTTCTGAAATGCTTCACCAGTTCACAATCTGAAAATTCATAA

Protein Analysis

515

Amino Acids

57.72

Weight (kDa)

6.1

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 31 - 474 4.3e-161 Ferroportin1 (FPN1)
MFS_1 PF07690 64 - 448 9.9e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1021
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 2 cut(s) 128, 458
AccB7I CCANNNNNTGG 2 cut(s) 115, 138
AccII CGCG 1 cut(s) 1467
AciI CCGC 2 cut(s) 1465, 1503
AclWI GGATC 7 cut(s) 62, 815, 871, 884, 1171, 1184, 1287
AcoI YGGCCR 2 cut(s) 117, 176
AcsI RAATTY 7 cut(s) 143, 382, 532, 827, 1188, 1391, 1540
AcuI CTGAAG 1 cut(s) 1316
AfaI GTAC 5 cut(s) 36, 460, 519, 924, 963
AfeI AGCGCT 1 cut(s) 1048
AfiI CCNNNNNNNGG 7 cut(s) 115, 138, 251, 710, 999, 1122, 1489
AgsI TTSAA 7 cut(s) 81, 388, 473, 761, 910, 1170, 1322
AhdI GACNNNNNGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 928
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 1391, 1423
Alw21I GWGCWC 2 cut(s) 433, 577
Alw26I GTCTC 4 cut(s) 471, 942, 1140, 1417
AlwI GGATC 7 cut(s) 62, 815, 871, 884, 1171, 1184, 1287
Aor51HI AGCGCT 1 cut(s) 1048
AoxI GGCC 3 cut(s) 106, 117, 176
ApeKI GCWGC 5 cut(s) 197, 720, 795, 1049, 1436
ApoI RAATTY 7 cut(s) 143, 382, 532, 827, 1188, 1391, 1540
Asp700I GAANNNNTTC 1 cut(s) 1517
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 3 cut(s) 21, 235, 1049
AspS9I GGNCC 2 cut(s) 242, 1143
AsuHPI GGTGA 2 cut(s) 502, 1513
AvaII GGWCC 2 cut(s) 242, 1143
BalI TGGCCA 2 cut(s) 119, 178
BamHI GGATCC 2 cut(s) 876, 1176
BanI GGYRCC 2 cut(s) 128, 458
BanII GRGCYC 1 cut(s) 433
BauI CACGAG 1 cut(s) 1035
Bbv12I GWGCWC 2 cut(s) 433, 577
BbvI GCAGC 5 cut(s) 184, 732, 807, 1036, 1423
BccI CCATC 5 cut(s) 117, 340, 470, 1091, 1345
BceAI ACGGC 1 cut(s) 1406
BciT130I CCWGG 1 cut(s) 930
BcoDI GTCTC 4 cut(s) 471, 942, 1140, 1417
BfaI CTAG 2 cut(s) 26, 104
BfoI RGCGCY 2 cut(s) 22, 1050
BfuAI ACCTGC 1 cut(s) 1021
BglII AGATCT 1 cut(s) 367
BisI GCNGC 5 cut(s) 198, 721, 796, 1050, 1437
BlsI GCNGC 5 cut(s) 199, 722, 797, 1051, 1438
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 930
Bme18I GGWCC 2 cut(s) 242, 1143
BmeRI GACNNNNNGTC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 242, 1143
BmiI GGNNCC 5 cut(s) 130, 337, 460, 878, 1178
BmrFI CCNGG 1 cut(s) 930
BmrI ACTGGG 2 cut(s) 490, 861
BmuI ACTGGG 2 cut(s) 490, 861
BoxI GACNNNNGTC 2 cut(s) 1123, 1409
BpmI CTGGAG 3 cut(s) 447, 495, 951
BpuEI CTTGAG 1 cut(s) 768
BsaI GGTCTC 2 cut(s) 1140, 1417
BsaJI CCNNGG 3 cut(s) 928, 993, 1422
BsaWI WCCGGW 1 cut(s) 1115
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 138, 251, 710, 999, 1122, 1489
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 5 cut(s) 485, 677, 772, 856, 1524
Bse3DI GCAATG 1 cut(s) 1439
BseBI CCWGG 1 cut(s) 930
BseDI CCNNGG 3 cut(s) 928, 993, 1422
BseGI GGATG 2 cut(s) 1251, 1263
BseLI CCNNNNNNNGG 7 cut(s) 115, 138, 251, 710, 999, 1122, 1489
BseMI GCAATG 1 cut(s) 1439
BseMII CTCAG 3 cut(s) 761, 979, 1151
BseNI ACTGG 5 cut(s) 485, 677, 772, 856, 1524
BseRI GAGGAG 1 cut(s) 805
BseXI GCAGC 5 cut(s) 184, 732, 807, 1036, 1423
BsgI GTGCAG 1 cut(s) 1439
Bsh1236I CGCG 1 cut(s) 1467
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 3 cut(s) 108, 119, 178
BshNI GGYRCC 2 cut(s) 128, 458
BsiEI CGRYCG 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 433, 577
BsiSI CCGG 3 cut(s) 333, 588, 1116
BslI CCNNNNNNNGG 7 cut(s) 115, 138, 251, 710, 999, 1122, 1489
BsmAI GTCTC 4 cut(s) 471, 942, 1140, 1417
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 3 cut(s) 108, 119, 178
Bso31I GGTCTC 2 cut(s) 1140, 1417
Bsp1286I GDGCHC 2 cut(s) 433, 577
Bsp1407I TGTACA 1 cut(s) 34
BspACI CCGC 2 cut(s) 1465, 1503
BspANI GGCC 3 cut(s) 108, 119, 178
BspCNI CTCAG 3 cut(s) 760, 978, 1150
BspFNI CGCG 1 cut(s) 1467
BspLI GGNNCC 5 cut(s) 130, 337, 460, 878, 1178
BspMI ACCTGC 1 cut(s) 1021
BspPI GGATC 7 cut(s) 62, 815, 871, 884, 1171, 1184, 1287
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 2 cut(s) 128, 458
BspTNI GGTCTC 2 cut(s) 1140, 1417
BsrDI GCAATG 1 cut(s) 1439
BsrFI RCCGGY 1 cut(s) 587
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 5 cut(s) 485, 677, 772, 856, 1524
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 3 cut(s) 928, 993, 1422
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 1 cut(s) 993
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 1 cut(s) 930
Bst4CI ACNGT 4 cut(s) 258, 343, 868, 961
Bst6I CTCTTC 2 cut(s) 9, 78
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 800
BstDEI CTNAG 5 cut(s) 466, 747, 965, 1109, 1137
BstDSI CCRYGG 1 cut(s) 1422
BstEII GGTNACC 1 cut(s) 583
BstF5I GGATG 2 cut(s) 1251, 1263
BstFNI CGCG 1 cut(s) 1467
BstH2I RGCGCY 2 cut(s) 22, 1050
BstHHI GCGC 3 cut(s) 21, 235, 1049
BstMAI GTCTC 4 cut(s) 471, 942, 1140, 1417
BstMCI CGRYCG 1 cut(s) 540
BstMWI GCNNNNNNNGC 4 cut(s) 230, 720, 1220, 1433
BstNI CCWGG 1 cut(s) 930
BstPAI GACNNNNGTC 2 cut(s) 1123, 1409
BstPI GGTNACC 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 928
BstUI CGCG 1 cut(s) 1467
BstV1I GCAGC 5 cut(s) 184, 732, 807, 1036, 1423
BstX2I RGATCY 3 cut(s) 367, 876, 1176
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 3 cut(s) 367, 876, 1176
BsuRI GGCC 3 cut(s) 108, 119, 178
BtgI CCRYGG 1 cut(s) 1422
BtsCI GGATG 2 cut(s) 1251, 1263
BtsIMutI CAGTG 3 cut(s) 765, 957, 1145
BveI ACCTGC 1 cut(s) 1021
Cac8I GCNNGC 1 cut(s) 800
CfoI GCGC 3 cut(s) 21, 235, 1049
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 2 cut(s) 242, 1143
CseI GACGC 1 cut(s) 1456
Csp6I GTAC 5 cut(s) 35, 459, 518, 923, 962
CviAII CATG 5 cut(s) 32, 163, 529, 1342, 1363
CviQI GTAC 5 cut(s) 35, 459, 518, 923, 962
DdeI CTNAG 5 cut(s) 466, 747, 965, 1109, 1137
DraI TTTAAA 2 cut(s) 282, 808
DriI GACNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 117, 176
Eam1104I CTCTTC 2 cut(s) 9, 78
Eam1105I GACNNNNNGTC 1 cut(s) 248
EarI CTCTTC 2 cut(s) 9, 78
Ecl136II GAGCTC 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 2 cut(s) 1140, 1417
Eco32I GATATC 2 cut(s) 495, 735
Eco47I GGWCC 2 cut(s) 242, 1143
Eco47III AGCGCT 1 cut(s) 1048
Eco53kI GAGCTC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 1316
Eco91I GGTNACC 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 583
EcoRI GAATTC 4 cut(s) 143, 532, 827, 1391
EcoRII CCWGG 1 cut(s) 928
EcoRV GATATC 2 cut(s) 495, 735
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 5 cut(s) 35, 166, 532, 1345, 1366
FalI AAGNNNNNCTT 3 cut(s) 38, 865, 897
FatI CATG 5 cut(s) 31, 162, 528, 1341, 1362
Fnu4HI GCNGC 5 cut(s) 198, 721, 796, 1050, 1437
FokI GGATG 2 cut(s) 1250, 1258
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 5 cut(s) 198, 721, 796, 1050, 1437
FspBI CTAG 2 cut(s) 26, 104
GlaI GCGC 3 cut(s) 20, 234, 1048
GluI GCNGC 5 cut(s) 198, 721, 796, 1050, 1437
GsuI CTGGAG 3 cut(s) 447, 495, 951
HaeII RGCGCY 2 cut(s) 22, 1050
HaeIII GGCC 3 cut(s) 108, 119, 178
HapII CCGG 3 cut(s) 333, 588, 1116
HgaI GACGC 1 cut(s) 1456
HhaI GCGC 3 cut(s) 21, 235, 1049
Hin1II CATG 5 cut(s) 35, 166, 532, 1345, 1366
Hin6I GCGC 3 cut(s) 19, 233, 1047
HinP1I GCGC 3 cut(s) 19, 233, 1047
HincII GTYRAC 1 cut(s) 1404
HindII GTYRAC 1 cut(s) 1404
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 8 cut(s) 56, 182, 218, 270, 286, 700, 1119, 1292
HpaII CCGG 3 cut(s) 333, 588, 1116
HphI GGTGA 2 cut(s) 502, 1513
Hpy166II GTNNAC 3 cut(s) 1143, 1404, 1529
Hpy188I TCNGA 8 cut(s) 52, 254, 499, 750, 1297, 1472, 1512, 1537
Hpy188III TCNNGA 9 cut(s) 426, 512, 643, 738, 758, 785, 824, 1289, 1396
Hpy8I GTNNAC 3 cut(s) 1143, 1404, 1529
HpyCH4III ACNGT 4 cut(s) 258, 343, 868, 961
HpyCH4V TGCA 8 cut(s) 392, 1016, 1052, 1067, 1090, 1276, 1439, 1456
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 720, 1220, 1433
HpyF3I CTNAG 5 cut(s) 466, 747, 965, 1109, 1137
Hsp92II CATG 5 cut(s) 35, 166, 532, 1345, 1366
HspAI GCGC 3 cut(s) 19, 233, 1047
KpnI GGTACC 1 cut(s) 462
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 4 cut(s) 335, 428, 580, 792
Lsp1109I GCAGC 5 cut(s) 184, 732, 807, 1036, 1423
MaeI CTAG 2 cut(s) 26, 104
MaeIII GTNAC 3 cut(s) 304, 351, 583
MboII GAAGA 4 cut(s) 26, 65, 281, 742
MfeI CAATTG 2 cut(s) 1053, 1071
MflI RGATCY 3 cut(s) 367, 876, 1176
MhlI GDGCHC 2 cut(s) 433, 577
MlsI TGGCCA 2 cut(s) 119, 178
MluNI TGGCCA 2 cut(s) 119, 178
MlyI GAGTC 2 cut(s) 176, 1113
MmeI TCCRAC 2 cut(s) 232, 1291
Mox20I TGGCCA 2 cut(s) 119, 178
Mph1103I ATGCAT 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 1517
MscI TGGCCA 2 cut(s) 119, 178
MseI TTAA 7 cut(s) 281, 413, 629, 807, 861, 1103, 1499
MslI CAYNNNNRTG 2 cut(s) 344, 686
Msp20I TGGCCA 2 cut(s) 119, 178
MspI CCGG 3 cut(s) 333, 588, 1116
MspR9I CCNGG 1 cut(s) 930
MunI CAATTG 2 cut(s) 1053, 1071
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 930
MvnI CGCG 1 cut(s) 1467
MwoI GCNNNNNNNGC 4 cut(s) 230, 720, 1220, 1433
NlaIII CATG 5 cut(s) 35, 166, 532, 1345, 1366
NlaIV GGNNCC 5 cut(s) 130, 337, 460, 878, 1178
NmeAIII GCCGAG 1 cut(s) 1210
NsiI ATGCAT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 9
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 1517
PfeI GAWTC 6 cut(s) 56, 218, 270, 286, 700, 1292
PflMI CCANNNNNTGG 2 cut(s) 115, 138
PkrI GCNGC 5 cut(s) 199, 722, 797, 1051, 1438
PleI GAGTC 2 cut(s) 176, 1113
PpsI GAGTC 2 cut(s) 176, 1113
PshAI GACNNNNGTC 2 cut(s) 1123, 1409
Psp124BI GAGCTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 928
PspEI GGTNACC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 928
PspN4I GGNNCC 5 cut(s) 130, 337, 460, 878, 1178
PspPI GGNCC 2 cut(s) 242, 1143
PsuI RGATCY 3 cut(s) 367, 876, 1176
RsaI GTAC 5 cut(s) 36, 460, 519, 924, 963
RsaNI GTAC 5 cut(s) 35, 459, 518, 923, 962
RseI CAYNNNNRTG 2 cut(s) 344, 686
SacI GAGCTC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 7 cut(s) 281, 413, 629, 807, 861, 1103, 1499
SatI GCNGC 5 cut(s) 198, 721, 796, 1050, 1437
Sau96I GGNCC 2 cut(s) 242, 1143
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 2 cut(s) 176, 1113
ScrFI CCNGG 1 cut(s) 930
SduI GDGCHC 2 cut(s) 433, 577
SinI GGWCC 2 cut(s) 242, 1143
SmiMI CAYNNNNRTG 2 cut(s) 344, 686
SmlI CTYRAG 1 cut(s) 783
SmoI CTYRAG 1 cut(s) 783
SsiI CCGC 2 cut(s) 1465, 1503
SspMI CTAG 2 cut(s) 26, 104
SstI GAGCTC 1 cut(s) 433
StyD4I CCNGG 1 cut(s) 928
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 4 cut(s) 258, 343, 868, 961
TaqI TCGA 1 cut(s) 292
TaqII GACCGA 1 cut(s) 526
TatI WGTACW 4 cut(s) 34, 517, 922, 961
TfiI GAWTC 6 cut(s) 56, 218, 270, 286, 700, 1292
Tru1I TTAA 7 cut(s) 281, 413, 629, 807, 861, 1103, 1499
Tru9I TTAA 7 cut(s) 281, 413, 629, 807, 861, 1103, 1499
TscAI CASTG 3 cut(s) 772, 964, 1145
TseI GCWGC 5 cut(s) 197, 720, 795, 1049, 1436
TspDTI ATGAA 6 cut(s) 17, 545, 583, 670, 828, 1533
TspRI CASTG 3 cut(s) 772, 964, 1145
Van91I CCANNNNNTGG 2 cut(s) 115, 138
VpaK11BI GGWCC 2 cut(s) 242, 1143
XapI RAATTY 7 cut(s) 143, 382, 532, 827, 1188, 1391, 1540
XcmI CCANNNNNNNNNTGG 1 cut(s) 1392
XmnI GAANNNNTTC 1 cut(s) 1517
XspI CTAG 2 cut(s) 26, 104
ZrmI AGTACT 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.