Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

3971079 .. 3973168

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0050500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCTACTGAAAAACCCGAAACGGTCGCACCAGCACCCATTCCAAAGACCATATCCAGCACAGCCAATCTTGCCAACCTCCTACCTACCGGCACCGTCCTCGCATTCCAGACCCTCATCCCTAGCTTCTCTAACAACGGATCATGCCATCCTTCCAATAAGGGCCTTACGATATCCATCATTGTAATCTGTGCCCTTTTATGCTTCTTCTCTTCTTTTACTGATAGCTTTATAGACAGTACCGATGGAAAATTCTATTATGGTATTGCCACTAGTGAAGGTATGTATATCTTAAACTCCACTTCAGAAGATACTAAACAACGAAGGCGTCGCTTGAAAGGGTATAGGAGAATGCCTGTAGATCATTTTCACGCCTTTATGTCACTAACTCTGTTCTTGATCTATGCTTTAACCAACCTCAACGTGAAAGATTGTTTCTTTCCCAAAGCAGGAGATAATCTTTCTCAAGTCATTATCAATTTGCCATTAGGAGCTGGGATTTTCGCATGCTTATTATTCACTATTTTTCCAACTACTAGAAGAGGAATTGGATTCACCCTGCTTCGTCCGGAAAAGGTAAAAGAAGTCGAGGGCCAAGCCTCGACCACCACGACCACACCCCAAGGATTAACCCCGAAAAAGGAGGTTGTAGTTGAAATAGAAGCCGATGCCCAGCCCTTGGCCGGCCACAACCATTCCCGCGGCCGCTCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

238

Amino Acids

26.08

Weight (kDa)

8.98

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	19 - 185	1.1e-57	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccBSI	CCGCTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	702
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	3 cut(s)	700, 702, 706
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	3 cut(s)	681, 685, 703
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	4 cut(s)	449, 640, 679, 683
AgsI	TTSAA	2 cut(s)	337, 656
AhlI	ACTAGT	1 cut(s)	272
AluBI	AGCT	3 cut(s)	126, 228, 494
AluI	AGCT	3 cut(s)	126, 228, 494
AlwI	GGATC	1 cut(s)	148
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	5 cut(s)	163, 592, 681, 685, 703
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	163, 592
AsuHPI	GGTGA	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	3 cut(s)	156, 185, 239
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	3 cut(s)	123, 273, 537
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	703, 706
BlsI	GCNGC	2 cut(s)	704, 707
BmgT120I	GGNCC	2 cut(s)	163, 592
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	622, 678, 700
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	4 cut(s)	449, 640, 679, 683
Bse118I	RCCGGY	2 cut(s)	89, 683
Bse8I	GATNNNNATC	1 cut(s)	176
BseAI	TCCGGA	1 cut(s)	568
BseDI	CCNNGG	3 cut(s)	622, 678, 700
BseGI	GGATG	2 cut(s)	117, 148
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	4 cut(s)	449, 640, 679, 683
BseSI	GKGCMC	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	703
BseYI	CCCAGC	2 cut(s)	494, 672
Bsh1236I	CGCG	1 cut(s)	702
Bsh1285I	CGRYCG	2 cut(s)	27, 706
BshFI	GGCC	5 cut(s)	165, 594, 683, 687, 705
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	2 cut(s)	27, 706
BsiSI	CCGG	3 cut(s)	90, 569, 684
BslI	CCNNNNNNNGG	4 cut(s)	449, 640, 679, 683
BsmI	GAATGC	2 cut(s)	104, 357
BsnI	GGCC	5 cut(s)	165, 594, 683, 687, 705
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	3 cut(s)	140, 361, 399
BspACI	CCGC	3 cut(s)	700, 702, 706
BspANI	GGCC	5 cut(s)	165, 594, 683, 687, 705
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	708
BsrFI	RCCGGY	2 cut(s)	89, 683
BssAI	RCCGGY	2 cut(s)	89, 683
BssECI	CCNNGG	3 cut(s)	622, 678, 700
BssMI	GATC	3 cut(s)	140, 361, 399
BssNI	GRCGYC	1 cut(s)	328
BssT1I	CCWWGG	2 cut(s)	622, 678
Bst4CI	ACNGT	3 cut(s)	25, 97, 239
Bst6I	CTCTTC	2 cut(s)	217, 535
BstACI	GRCGYC	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	508, 685
BstDSI	CCRYGG	1 cut(s)	700
BstF5I	GGATG	2 cut(s)	117, 148
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	3 cut(s)	143, 364, 402
BstMBI	GATC	3 cut(s)	140, 361, 399
BstMCI	CGRYCG	2 cut(s)	27, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	702
BstZI	CGGCCG	1 cut(s)	703
BsuRI	GGCC	5 cut(s)	165, 594, 683, 687, 705
BtgI	CCRYGG	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	117, 148
Cac8I	GCNNGC	2 cut(s)	508, 685
CciNI	GCGGCCGC	1 cut(s)	703
Cfr10I	RCCGGY	2 cut(s)	89, 683
Cfr13I	GGNCC	2 cut(s)	163, 592
Cfr42I	CCGCGG	1 cut(s)	703
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	144, 507
CviQI	GTAC	1 cut(s)	240
DpnI	GATC	3 cut(s)	142, 363, 401
DpnII	GATC	3 cut(s)	140, 361, 399
EaeI	YGGCCR	3 cut(s)	681, 685, 703
EagI	CGGCCG	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	217, 535
EarI	CTCTTC	2 cut(s)	217, 535
EclXI	CGGCCG	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	622, 678
Eco32I	GATATC	1 cut(s)	174
Eco52I	CGGCCG	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	622, 678
ErhI	CCWWGG	2 cut(s)	622, 678
FaeI	CATG	2 cut(s)	147, 510
FatI	CATG	2 cut(s)	143, 506
FauI	CCCGC	1 cut(s)	707
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	703, 706
FokI	GGATG	2 cut(s)	104, 135
FseI	GGCCGGCC	1 cut(s)	687
Fsp4HI	GCNGC	2 cut(s)	703, 706
FspBI	CTAG	3 cut(s)	123, 273, 537
GluI	GCNGC	2 cut(s)	703, 706
GsaI	CCCAGC	2 cut(s)	498, 676
HaeIII	GGCC	5 cut(s)	165, 594, 683, 687, 705
HapII	CCGG	3 cut(s)	90, 569, 684
HgaI	GACGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	147, 510
HinfI	GANTC	1 cut(s)	552
HpaII	CCGG	3 cut(s)	90, 569, 684
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	109, 397, 569
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	162, 272, 318
HpyCH4III	ACNGT	3 cut(s)	25, 97, 239
HpyCH4IV	ACGT	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	147, 510
Kpn2I	TCCGGA	1 cut(s)	568
KroI	GCCGGC	1 cut(s)	683
KroNI	GCCGGC	1 cut(s)	685
KspI	CCGCGG	1 cut(s)	703
Kzo9I	GATC	3 cut(s)	140, 361, 399
LmnI	GCTCC	1 cut(s)	491
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	3 cut(s)	123, 273, 537
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	3 cut(s)	142, 363, 401
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	3 cut(s)	140, 361, 399
MboII	GAAGA	4 cut(s)	199, 204, 320, 552
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	3 cut(s)	251, 478, 546
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	8 cut(s)	89, 110, 125, 428, 536, 583, 610, 637
MroI	TCCGGA	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	683
MseI	TTAA	3 cut(s)	293, 410, 629
MspA1I	CMGCKG	1 cut(s)	702
MspI	CCGG	3 cut(s)	90, 569, 684
Mva1269I	GAATGC	2 cut(s)	104, 357
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	685
NdeII	GATC	3 cut(s)	140, 361, 399
NgoMIV	GCCGGC	1 cut(s)	683
NlaIII	CATG	2 cut(s)	147, 510
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	381
NotI	GCGGCCGC	1 cut(s)	703
NspI	RCATGY	1 cut(s)	510
PaeI	GCATGC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	608
PctI	GAATGC	2 cut(s)	104, 357
PdiI	GCCGGC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	552
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	704, 707
PspFI	CCCAGC	2 cut(s)	494, 672
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	163, 592
RigI	GGCCGGCC	1 cut(s)	687
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	703
SaqAI	TTAA	3 cut(s)	293, 410, 629
SatI	GCNGC	2 cut(s)	703, 706
Sau3AI	GATC	3 cut(s)	140, 361, 399
Sau96I	GGNCC	2 cut(s)	163, 592
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	357
Sfr303I	CCGCGG	1 cut(s)	703
SgrBI	CCGCGG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
SpeI	ACTAGT	1 cut(s)	272
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	3 cut(s)	251, 478, 546
SsiI	CCGC	3 cut(s)	700, 702, 706
SspMI	CTAG	3 cut(s)	123, 273, 537
StyI	CCWWGG	2 cut(s)	622, 678
TaaI	ACNGT	3 cut(s)	25, 97, 239
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	588, 602
TasI	AATT	3 cut(s)	251, 478, 546
TauI	GCSGC	2 cut(s)	705, 708
TfiI	GAWTC	1 cut(s)	552
Tru1I	TTAA	3 cut(s)	293, 410, 629
Tru9I	TTAA	3 cut(s)	293, 410, 629
TseFI	GTSAC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	153
Van91I	CCANNNNNTGG	1 cut(s)	679
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	123, 273, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.