Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

3973894 .. 3974641

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0050600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGACTACCGTAACAAAAGACGAAGACGTAACACCTACTCAAAAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTCCTACCTACCGGCACCGTCCTCGCATTCCAGACCCTCATTCCTAGTTTCTCCAACAACGGAGCATGCCATCCCGCCAATATAGGCCTTTCAATATCCATCATTTTAATCTGTGCCCTTTTCTGCATCTTCTGCAACTTTACTGATAGCTTCATAGACAGTACCGATGGAAAGTTCTATTATGGTATCATCACTCGCGAAGGCATGCACATCTTAAATCCTAGAGCAAAAGAGCTTACTGATGACGAAAAAAAGCGCTTGAGAAAGTATAGAATAAAGCCTATAGATTATTTTCACGCTTTTTTGTCACTAATTGTGTTCTTGATCTTTGCTCTTACCGACCTCAACGTGAAAAATTGTTTCTTTCCGGACGCGGGAGATGATCTCAATCAAATCATTATCAATTTGCCTCTAGGAGCTGGGGTTTTCGTATCCTTCTTATTCACAATTTTTCCAACTACTCGAAGAGGGATAGGATACACGCAGCCCCGGGCAAATAAGAAAAAAAAAAGTGGGAACAAGACCTCGACCACCACGACCACGTCCAAAAGATCGGACTTGGAAATGGGGAGTGTGGTCGTAGGAGGAGCCGAGGCTGAGGCCAGGGCCTCCATCACAACCTCTACCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

235

Amino Acids

25.72

Weight (kDa)

8.95

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	19 - 185	1.3e-59	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	2 cut(s)	273, 449
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	150, 449
AfaI	GTAC	1 cut(s)	238
AfeI	AGCGCT	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	168
AjiI	CACGTC	1 cut(s)	618
AjnI	CCWGG	1 cut(s)	677
AluBI	AGCT	3 cut(s)	225, 310, 494
AluI	AGCT	3 cut(s)	225, 310, 494
Ama87I	CYCGRG	1 cut(s)	564
Aor13HI	TCCGGA	1 cut(s)	442
Aor51HI	AGCGCT	1 cut(s)	332
AoxI	GGCC	3 cut(s)	160, 675, 681
ApeKI	GCWGC	2 cut(s)	59, 559
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	681
AsuC2I	CCSGG	2 cut(s)	565, 566
AvaI	CYCGRG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	71, 571
BccI	CCATC	4 cut(s)	153, 182, 236, 695
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	679
BciVI	GTATCC	2 cut(s)	517, 545
BcnI	CCSGG	2 cut(s)	565, 566
BfaI	CTAG	3 cut(s)	120, 297, 488
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	334
BfuI	GTATCC	2 cut(s)	517, 545
BisI	GCNGC	2 cut(s)	60, 560
BlsI	GCNGC	2 cut(s)	61, 561
Bme1390I	CCNGG	3 cut(s)	565, 566, 679
BmeT110I	CYCGRG	1 cut(s)	564
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	2 cut(s)	91, 664
BmrFI	CCNGG	3 cut(s)	565, 566, 679
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
Bpu10I	CCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	2 cut(s)	565, 566
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	563, 564, 666, 678
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	679
BseDI	CCNNGG	4 cut(s)	563, 564, 666, 678
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	71, 571
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	2 cut(s)	273, 449
BshFI	GGCC	3 cut(s)	162, 677, 683
BshNI	GGYRCC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	564
BsiSI	CCGG	3 cut(s)	87, 443, 565
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	162, 677, 683
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	399, 457, 626
Bsp68I	TCGCGA	1 cut(s)	273
BspACI	CCGC	2 cut(s)	150, 449
BspANI	GGCC	3 cut(s)	162, 677, 683
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	273, 449
BspLI	GGNNCC	2 cut(s)	91, 664
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	4 cut(s)	563, 564, 666, 678
BssMI	GATC	3 cut(s)	399, 457, 626
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	3 cut(s)	10, 94, 236
Bst6I	CTCTTC	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	142, 281
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	2 cut(s)	273, 449
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	402, 460, 629
BstMBI	GATC	3 cut(s)	399, 457, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 68, 207
BstNI	CCWGG	1 cut(s)	679
BstNSI	RCATGY	2 cut(s)	144, 283
BstSCI	CCNGG	3 cut(s)	563, 564, 677
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	2 cut(s)	273, 449
BstV1I	GCAGC	2 cut(s)	71, 571
BstV2I	GAAGAC	1 cut(s)	30
BsuI	GTATCC	2 cut(s)	517, 545
BsuRI	GGCC	3 cut(s)	162, 677, 683
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	61
BtuMI	TCGCGA	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	142, 281
CfoI	GCGC	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	681
Cfr9I	CCCGGG	1 cut(s)	564
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	141, 280
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	3 cut(s)	401, 459, 628
DpnII	GATC	3 cut(s)	399, 457, 626
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	677
FaeI	CATG	2 cut(s)	144, 283
FaiI	YATR	8 cut(s)	50, 142, 158, 230, 258, 281, 345, 359
FatI	CATG	2 cut(s)	140, 279
FauI	CCCGC	2 cut(s)	157, 442
Fnu4HI	GCNGC	2 cut(s)	60, 560
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	60, 560
FspBI	CTAG	3 cut(s)	120, 297, 488
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	60, 560
GsaI	CCCAGC	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	162, 677, 683
HapII	CCGG	3 cut(s)	87, 443, 565
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	144, 283
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HpaII	CCGG	3 cut(s)	87, 443, 565
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	4 cut(s)	106, 272, 397, 443
HpyAV	CCTTC	2 cut(s)	269, 520
HpyCH4III	ACNGT	3 cut(s)	10, 94, 236
HpyCH4IV	ACGT	3 cut(s)	27, 423, 617
HpyCH4V	TGCA	4 cut(s)	59, 201, 210, 283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 68, 207
HpyF3I	CTNAG	1 cut(s)	672
HpySE526I	ACGT	3 cut(s)	27, 423, 617
Hsp92II	CATG	2 cut(s)	144, 283
HspAI	GCGC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	399, 457, 626
LmnI	GCTCC	3 cut(s)	137, 491, 662
LpnPI	CCDG	8 cut(s)	67, 100, 119, 456, 480, 578, 664, 691
Lsp1109I	GCAGC	2 cut(s)	71, 571
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	3 cut(s)	120, 297, 488
MaeII	ACGT	3 cut(s)	27, 423, 617
MaeIII	GTNAC	3 cut(s)	10, 28, 381
MalI	GATC	3 cut(s)	401, 459, 628
MboI	GATC	3 cut(s)	399, 457, 626
MboII	GAAGA	3 cut(s)	35, 196, 552
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	387, 430, 478, 522
MmeI	TCCRAC	2 cut(s)	153, 554
MroI	TCCGGA	1 cut(s)	442
MseI	TTAA	2 cut(s)	182, 290
MspI	CCGG	3 cut(s)	87, 443, 565
MspR9I	CCNGG	3 cut(s)	565, 566, 679
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	679
MvnI	CGCG	2 cut(s)	273, 449
MwoI	GCNNNNNNNGC	3 cut(s)	59, 68, 207
NciI	CCSGG	2 cut(s)	565, 566
NdeII	GATC	3 cut(s)	399, 457, 626
NlaIII	CATG	2 cut(s)	144, 283
NlaIV	GGNNCC	2 cut(s)	91, 664
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	381
NruI	TCGCGA	1 cut(s)	273
NspI	RCATGY	2 cut(s)	144, 283
PaeI	GCATGC	2 cut(s)	144, 283
PceI	AGGCCT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	608
PctI	GAATGC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	61, 561
Psp6I	CCWGG	1 cut(s)	677
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	2 cut(s)	91, 664
PspPI	GGNCC	1 cut(s)	681
PsyI	GACNNNGTC	1 cut(s)	616
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	182, 290
SatI	GCNGC	2 cut(s)	60, 560
Sau3AI	GATC	3 cut(s)	399, 457, 626
Sau96I	GGNCC	1 cut(s)	681
ScrFI	CCNGG	3 cut(s)	565, 566, 679
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	357
SmaI	CCCGGG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
SphI	GCATGC	2 cut(s)	144, 283
Sse9I	AATT	4 cut(s)	387, 430, 478, 522
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	150, 449
SspMI	CTAG	3 cut(s)	120, 297, 488
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	563, 564, 677
TaaI	ACNGT	3 cut(s)	10, 94, 236
TaiI	ACGT	3 cut(s)	30, 426, 620
TaqI	TCGA	2 cut(s)	538, 602
TasI	AATT	4 cut(s)	387, 430, 478, 522
Tru1I	TTAA	2 cut(s)	182, 290
Tru9I	TTAA	2 cut(s)	182, 290
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	2 cut(s)	59, 559
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	150
TspMI	CCCGGG	1 cut(s)	564
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	616
XceI	RCATGY	2 cut(s)	144, 283
XmaI	CCCGGG	1 cut(s)	564
XspI	CTAG	3 cut(s)	120, 297, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.