Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

3928585 .. 3930083

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0050300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTGAACCGTTTGTTCAACACATAAACTCATCGTCATCAACACCAGTAGCAAACTCTGCGGCGGCCGCCTCATTATTCCGTTCAATGGCAGATCAACAGATTGTGTTACAAATTGGACAACTATCAAGTTCAACACCACCACCACCACCTGATGATGAACAAAGGAAATCAGCACACCATGGTACCTTAAACCTCAGGGTAACTGAGCCGATTTTGCTACACATAAACTCATTAACACCACTTCTCAATAACCAACCAATTAGTACTCAATCAAGACCAACACCACCACCACCAAAAGACCAAGTAACCTCTAATCCAACGACTGATATTGCACAATCTTTGAAAGGCACAAAGCACCAAAAGGCACTTAGCAAGATGGGAAGCCTGGCAAACCTGTTACCCACAGGCACTGTTCTTGCATTCCAAGCCATCACGCCTTCCCTTTCCTACAACGGTAGATGCCACATCTTCAACAAGTACCTTGTGGCATTCGTCATGCTAGCTTGTTCTCTCGTTTGCTTCGTCTCTTCCTTCACCGACAGCCTGGAATATGAGCAGAAAGTGTACTATGGCATTGCAACATTCAACGGGCTTTCAGTTTTCAACTATGAACGCCGTGAGGTTGAAGAAAAAGCTCTTGAGGATAAGCTGAAGTCGCTGAAGATTATACCCAGGGACTATCTTCATGCGTTTCTCTCGGTTTTTGTGTTCTTGATATTTGCTTGTAGCAGCTTAGAGGTGCAGACCTGCTACTTTCCGGCTGGAATAAGAGATCAGTTGGAGTATTCGATGGTGATATATTTGCCGTTGGTCGTTGGATTGCTGTCAAGTTTCTTGTTCACTCATTTCCCTACTAACCGTAGAGGGATTGGCTACACATGCACCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

298

Amino Acids

33.0

Weight (kDa)

8.48

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	126 - 293	7.9e-52	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	3 cut(s)	62, 65, 69
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	674, 683
AfaI	GTAC	4 cut(s)	187, 268, 482, 569
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	8 cut(s)	20, 87, 135, 346, 475, 589, 607, 629
AjnI	CCWGG	3 cut(s)	387, 546, 674
AluBI	AGCT	4 cut(s)	506, 638, 652, 735
AluI	AGCT	4 cut(s)	506, 638, 652, 735
Alw26I	GTCTC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	529, 808
AsuNHI	GCTAGC	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	744
BccI	CCATC	3 cut(s)	373, 440, 787
BceAI	ACGGC	2 cut(s)	603, 793
BciT130I	CCWGG	3 cut(s)	389, 548, 676
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	4 cut(s)	63, 66, 69, 733
BlsI	GCNGC	4 cut(s)	64, 67, 70, 734
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	389, 548, 676
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	389, 548, 676
BmsI	GCATC	1 cut(s)	452
BmtI	GCTAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	181, 674, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	389, 548, 676
BseDI	CCNNGG	3 cut(s)	181, 674, 675
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	198, 211
BseNI	ACTGG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	744
BsgI	GTGCAG	1 cut(s)	764
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	532
BsmBI	CGTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	2 cut(s)	422, 491
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	94, 775
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	3 cut(s)	62, 65, 69
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	199, 210
BspLI	GGNNCC	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	758
BspOI	GCTAGC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	181, 674, 675
BssMI	GATC	2 cut(s)	94, 775
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	3 cut(s)	389, 548, 676
Bst4CI	ACNGT	4 cut(s)	12, 415, 458, 863
Bst6I	CTCTTC	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	4 cut(s)	197, 207, 371, 736
BstDSI	CCRYGG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	97, 778
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	94, 775
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 217, 428, 658, 882
BstNI	CCWGG	3 cut(s)	389, 548, 676
BstNSI	RCATGY	1 cut(s)	885
BstSCI	CCNGG	3 cut(s)	387, 546, 674
BstV1I	GCAGC	1 cut(s)	744
BstZI	CGGCCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	413
CciNI	GCGGCCGC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	186, 267, 481, 568
CviAII	CATG	5 cut(s)	182, 499, 689, 882, 894
CviQI	GTAC	4 cut(s)	186, 267, 481, 568
DdeI	CTNAG	4 cut(s)	197, 207, 371, 736
DpnI	GATC	2 cut(s)	96, 777
DpnII	GATC	2 cut(s)	94, 775
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	674, 683
Eco81I	CCTNAGG	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	387, 546, 674
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	5 cut(s)	185, 502, 692, 885, 897
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	5 cut(s)	181, 498, 688, 881, 893
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 733
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 733
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	4 cut(s)	63, 66, 69, 733
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	761
Hin1II	CATG	5 cut(s)	185, 502, 692, 885, 897
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	2 cut(s)	529, 808
Hpy166II	GTNNAC	2 cut(s)	568, 843
Hpy188III	TCNNGA	3 cut(s)	276, 641, 715
Hpy8I	GTNNAC	2 cut(s)	568, 843
HpyAV	CCTTC	2 cut(s)	450, 544
HpyCH4III	ACNGT	4 cut(s)	12, 415, 458, 863
HpyCH4V	TGCA	5 cut(s)	335, 422, 581, 745, 885
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 217, 428, 658, 882
HpyF3I	CTNAG	4 cut(s)	197, 207, 371, 736
Hsp92II	CATG	5 cut(s)	185, 502, 692, 885, 897
KpnI	GGTACC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	94, 775
Lsp1109I	GCAGC	1 cut(s)	744
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	4 cut(s)	108, 202, 307, 399
MalI	GATC	2 cut(s)	96, 777
MboI	GATC	2 cut(s)	94, 775
MboII	GAAGA	5 cut(s)	463, 522, 641, 676, 677
MluCI	AATT	2 cut(s)	114, 261
MmeI	TCCRAC	3 cut(s)	344, 762, 799
MnlI	CCTC	7 cut(s)	82, 206, 322, 616, 637, 733, 860
MseI	TTAA	2 cut(s)	191, 236
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	3 cut(s)	389, 548, 676
Mva1269I	GAATGC	2 cut(s)	422, 491
MvaI	CCWGG	3 cut(s)	389, 548, 676
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 217, 428, 658, 882
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	94, 775
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	5 cut(s)	185, 502, 692, 885, 897
NlaIV	GGNNCC	1 cut(s)	187
NotI	GCGGCCGC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	885
PasI	CCCWGGG	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	2 cut(s)	422, 491
PkrI	GCNGC	4 cut(s)	64, 67, 70, 734
Psp6I	CCWGG	3 cut(s)	387, 546, 674
PspGI	CCWGG	3 cut(s)	387, 546, 674
PspN4I	GGNNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	4 cut(s)	187, 268, 482, 569
RsaNI	GTAC	4 cut(s)	186, 267, 481, 568
SaqAI	TTAA	2 cut(s)	191, 236
SatI	GCNGC	4 cut(s)	63, 66, 69, 733
Sau3AI	GATC	2 cut(s)	94, 775
ScaI	AGTACT	1 cut(s)	268
ScrFI	CCNGG	3 cut(s)	389, 548, 676
SfaNI	GCATC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	2 cut(s)	114, 261
SsiI	CCGC	3 cut(s)	62, 65, 69
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	3 cut(s)	387, 546, 674
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	4 cut(s)	12, 415, 458, 863
TaqI	TCGA	1 cut(s)	791
TasI	AATT	2 cut(s)	114, 261
TatI	WGTACW	2 cut(s)	266, 567
TauI	GCSGC	3 cut(s)	65, 68, 71
Tru1I	TTAA	2 cut(s)	191, 236
Tru9I	TTAA	2 cut(s)	191, 236
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	1 cut(s)	732
TspDTI	ATGAA	3 cut(s)	174, 627, 677
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	418
XceI	RCATGY	1 cut(s)	885
XspI	CTAG	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.