Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001138

Physical Location & Seq

Genomic Coordinates Forward (+)

70918902 .. 70921089

Gene Structure 2188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0523500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATCTTGAGTCCCAATTACCATTTTTTTTTCAGGCATTACTTGAGTTTGAAAAGCATAGATGGCATGGCAGTGAGCTTGCTCTTCCTGAACCTTCTAGAGTTGAGATTCGGGCTGATGGTAGTCAAACTTGTGGATCACTAAGGGATGCTGCAGCAGTGCAGCTCGTGCCATGCAGGGTTGGCACTCTCAATGCCTTTTTGGAAATGGCGAGGTTGGAGAAGCATTTGAGTACTATGCCAAAAAGCGACAAGCAGCTCAAGAGCTCTGGTTTGTTAAAGCGGAAAAAGCTATCTCCTGGGGATTGTGCTGCCCAGATTACTGACATGAAAGCGACAAAGCCACGGTTAGATATGACGGTATTTGATATTGGACCGCCAGCAGATTGGGTGAAAATTAACGTGAAACGATTTAGCGACTGCTTTGAGGTATGTGCCCTAGTTCCTGGACTTCTGCGTGAGGAAATTAGCTATTCCGTATCTGTCTTTGTTAACAATGATCTTTTGTTTCAGTGGCAGCGACGATCCGAATTGTTCTACACCCAAAAGGATGTTGATGTTGTGAGGTCAGAGTGGGCTAAGTTTGTGATGAAGTATCATATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

202

Amino Acids

23.07

Weight (kDa)

8.25

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT2G38460 AT5G03570 AT5G03570 AT5G03570 AT5G03570
fragaria_vesca	FvH4_6g10490 FvH4_6g10490 FvH4_6g10490
malus_domestica	MD12G1181400.v1.1
prunus_persica	Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1 Prupe.6G286200_v2.0.a1
pyrus_communis	pycom12g17080
rosa_chinensis	RchiOBHm_Chr3g0461441 RchiOBHm_Chr3g0461451 RchiOBHm_Chr6g0247161
rosa_laevigata	RLG00000015217 RLG00000024933 RLG00000024934
rosa_multiflora	Rmu_sc0002677.1_g000013 Rmu_ssc0000437.1_g000002
rosa_roxburghii	Rroxscaffold_6G00418280 Rroxscaffold_6G00418310 Rroxscaffold_6G00418600 Rroxscaffold_6G00418610 Rroxscaffold_7G00214300
rosa_rugosa	Rorug03G0050300 Rorug03G0050400 Rorug03G0050500 Rorug03G0050600 Rorug03G0050700 Rorug03G0050800 Rorug05G0523400.1 Rorug05G0523500 Rorug05G0523600 Rorug05G0523700.1 Rorug05G0523800 Rorug05G0523800
rosa_samantha	Rh3AG108500 Rh3AG108600 Rh3BG112300 Rh3BG112400 Rh3CG114000 Rh3DG113900 Rh3DG114000 Rh6AG038100 Rh6BG033000 Rh6CG033700 Rh6DG031400
rosa_wichuraiana	Rw3G009230 Rw6G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	283, 377
AclWI	GGATC	3 cut(s)	12, 145, 519
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	2 cut(s)	298, 445
AluBI	AGCT	6 cut(s)	79, 166, 259, 267, 292, 471
AluI	AGCT	6 cut(s)	79, 166, 259, 267, 292, 471
Alw21I	GWGCWC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	12, 145, 519
ApeKI	GCWGC	6 cut(s)	152, 155, 163, 256, 311, 517
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	269
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	6 cut(s)	139, 167, 175, 268, 298, 529
BccI	CCATC	2 cut(s)	57, 113
BciT130I	CCWGG	2 cut(s)	300, 447
BfaI	CTAG	2 cut(s)	99, 440
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	6 cut(s)	153, 156, 164, 257, 312, 518
BlsI	GCNGC	6 cut(s)	154, 157, 165, 258, 313, 519
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	300, 447
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmrFI	CCNGG	2 cut(s)	300, 447
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	3 cut(s)	29, 65, 245
BsaJI	CCNNGG	2 cut(s)	299, 344
BseBI	CCWGG	2 cut(s)	300, 447
BseDI	CCNNGG	2 cut(s)	299, 344
BseGI	GGATG	2 cut(s)	154, 556
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	6 cut(s)	139, 167, 175, 268, 298, 529
BsgI	GTGCAG	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	269, 439
Bsp143I	GATC	4 cut(s)	4, 137, 499, 524
BspACI	CCGC	2 cut(s)	283, 377
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	3 cut(s)	12, 145, 519
BspQI	GCTCTTC	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	299, 344
BssMI	GATC	4 cut(s)	4, 137, 499, 524
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	300, 447
Bst4CI	ACNGT	2 cut(s)	348, 361
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	81, 381
BstDEI	CTNAG	3 cut(s)	143, 579, 606
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	154, 556
BstKTI	GATC	4 cut(s)	7, 140, 502, 527
BstMBI	GATC	4 cut(s)	4, 137, 499, 524
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 169, 183, 289
BstNI	CCWGG	2 cut(s)	300, 447
BstSCI	CCNGG	2 cut(s)	298, 445
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	6 cut(s)	139, 167, 175, 268, 298, 529
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	154, 556
BtsI	GCAGTG	2 cut(s)	79, 165
BtsIMutI	CAGTG	3 cut(s)	79, 165, 518
Cac8I	GCNNGC	2 cut(s)	81, 381
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	68, 174, 328
CviJI	RGCY	9 cut(s)	79, 116, 166, 259, 267, 292, 343, 471, 578
CviKI_1	RGCY	9 cut(s)	79, 116, 166, 259, 267, 292, 343, 471, 578
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	143, 579, 606
DpnI	GATC	4 cut(s)	6, 139, 501, 526
DpnII	GATC	4 cut(s)	4, 137, 499, 524
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	298, 445
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	3 cut(s)	71, 177, 331
FaiI	YATR	8 cut(s)	60, 69, 175, 239, 329, 356, 433, 600
FatI	CATG	3 cut(s)	67, 173, 327
Fnu4HI	GCNGC	6 cut(s)	153, 156, 164, 257, 312, 518
FokI	GGATG	2 cut(s)	161, 563
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	6 cut(s)	153, 156, 164, 257, 312, 518
FspBI	CTAG	2 cut(s)	99, 440
GluI	GCNGC	6 cut(s)	153, 156, 164, 257, 312, 518
Hin1II	CATG	3 cut(s)	71, 177, 331
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	11, 109
HpaI	GTTAAC	1 cut(s)	493
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	529, 571
Hpy188III	TCNNGA	4 cut(s)	8, 89, 99, 262
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	525
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	348, 361
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	155, 163, 177
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 169, 183, 289
HpyF3I	CTNAG	3 cut(s)	143, 579, 606
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	71, 177, 331
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	4, 137, 499, 524
LguI	GCTCTTC	1 cut(s)	90
Lsp1109I	GCAGC	6 cut(s)	139, 167, 175, 268, 298, 529
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	99, 440
MaeII	ACGT	1 cut(s)	402
MalI	GATC	4 cut(s)	6, 139, 501, 526
MboI	GATC	4 cut(s)	4, 137, 499, 524
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	269, 439
MluCI	AATT	4 cut(s)	17, 396, 465, 530
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	207, 421, 454, 558
MseI	TTAA	3 cut(s)	278, 399, 492
MslI	CAYNNNNRTG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	300, 447
MvaI	CCWGG	2 cut(s)	300, 447
MwoI	GCNNNNNNNGC	4 cut(s)	64, 169, 183, 289
NdeII	GATC	4 cut(s)	4, 137, 499, 524
NlaIII	CATG	3 cut(s)	71, 177, 331
PciSI	GCTCTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	154, 157, 165, 258, 313, 519
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	298, 445
PspGI	CCWGG	2 cut(s)	298, 445
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	278, 399, 492
SatI	GCNGC	6 cut(s)	153, 156, 164, 257, 312, 518
Sau3AI	GATC	4 cut(s)	4, 137, 499, 524
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	300, 447
SduI	GDGCHC	2 cut(s)	269, 439
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	3 cut(s)	8, 44, 260
SmoI	CTYRAG	3 cut(s)	8, 44, 260
Sse9I	AATT	4 cut(s)	17, 396, 465, 530
SsiI	CCGC	2 cut(s)	283, 377
SspMI	CTAG	2 cut(s)	99, 440
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	298, 445
TaaI	ACNGT	2 cut(s)	348, 361
TaiI	ACGT	1 cut(s)	405
TasI	AATT	4 cut(s)	17, 396, 465, 530
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	3 cut(s)	278, 399, 492
Tru9I	TTAA	3 cut(s)	278, 399, 492
TscAI	CASTG	3 cut(s)	79, 165, 518
TseI	GCWGC	6 cut(s)	152, 155, 163, 256, 311, 517
TspDTI	ATGAA	2 cut(s)	344, 605
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	3 cut(s)	79, 165, 518
VpaK11BI	GGWCC	1 cut(s)	374
XbaI	TCTAGA	1 cut(s)	98
XspI	CTAG	2 cut(s)	99, 440
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.