RchiOBHm_Chr3g0474931

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
20744157 .. 20753360
9204 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1548 bp
ATGAAGAAGATGACAGAATCTGGGTCCCCATTTCTTTTCTTCTTCTCTTTCTTCTGTTTGCTGATTCATTGTCTTCCTGTCTACTCTGCCAAATCCCCTCCTCCTAGATTCCCATCTTCACTTATATCCCCAGAAGATAAGATATCACTTTCTGCTCGTCAAAACCAACTTTACAGAACCAAATACTTCACCCAAGTCCTTGATCATTTCAATTACTATCCCAAGAGCTATGAATCTTTTCAACAGAGGTATTTGATAAATGATACGTTCTGGGGAGGCGCCAAGAGCAATGCTCCAATCTTTGTCTACACTGGTAATGAAGGGAACATAGAATGGTTTGCGCAGAACACTGGTTTTCTGTATGAGACAGCGCCCCAGTTCAAAGCCCTCGTCATTTTCATTGAGCATAGGTTCTATGGAAAGTCTATACCTTTTGGGGGCAAGAAAGATGTGGCTTATAGCAATTCAACTACACTTGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCGTTAATTATTGATTTGAAGAATAATTTGACAGCAACTGACTCACCTGTAGTGGTCTTTGGAGGTTCCTATGGAGGAATGCTGGCAGCATGGTTTAGGTTGAAGTATCCCCATGTTACAATTGGAGCTTTGGCATCATCTTCCCCAATCCTCAATTTTGAGAATATAACATCTCCTTATAGCTTCAACGATATAGTCACTAAAGACTTTAGGAGTGAGAGTGAGAATTGTTACAAAGTGATCAAAGGCTCATGGCAACAGATCGAAGACACTGCAAACCAACGTGGAGGGCTTGAGCTACTCCGGAAATCGTTTAAAATATGCAAGAATTATATTAGCGCAAATGATCTTGAAGGTTGGCTTAGAACTGCTTATATTTACACAGCAATGACAGATTATCCTACTCCTTCGAATTTCTTAAATCCCTTGCCAGCATATCCAGTTAAACAGATGTGTAAGGCGATAGATGATCCAACGACAGGAAATGATACATTTGCAAAATTATATGGTACAGCTACTGTCTACTATAACTACAGTGGGACGGCTACGTGTTTCGATCTTAATGATAACTCAGATCCTCACGACCTCGGAGGATGGCAATGGCAGGCGTGTACAGAGATGATAATGCCAGCAAGTGCTAACAACGAGGAGAGCATATTCCCACCTTCTGAGTGGCAATACAAAAATCGAGTCTCTTATTGCGAAAGGGCTTATGGCATTGAACCTAGGCCTCATTGGATCACCACCGAGTTTGGCGGGCATGATATCAAGAGGGTTTTGAGAAGATATGGGAGCAACATTATCTTCTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAACAATATTTCCGAGAGCATAGTAGCAATTGTTGCAAAAAAAGGTGCTCACCATGTAGATTTGAGGTTCAAAACCAGTGAAGATCCAGAATGGCTTGAAGATGTGAGGAAGCAAGAGATCAAGATCATTGCAAAGTGGATCTCAGAATATTATCATGACCTTGCTCATGATCAACTATCTTAA

Protein Analysis

515

Amino Acids

58.61

Weight (kDa)

6.43

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 65 - 492 1.3e-85 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 3 cut(s) 81, 306, 1038
AccIII TCCGGA 1 cut(s) 819
AciI CCGC 1 cut(s) 1272
AclWI GGATC 5 cut(s) 980, 1085, 1262, 1442, 1511
AcsI RAATTY 1 cut(s) 928
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 1027, 1129
AfiI CCNNNNNNNGG 3 cut(s) 437, 995, 1349
AflII CTTAAG 1 cut(s) 1333
AflIII ACRYGT 1 cut(s) 1064
AloI GAACNNNNNNTCC 2 cut(s) 1358, 1390
AluBI AGCT 6 cut(s) 228, 489, 644, 699, 814, 1031
AluI AGCT 6 cut(s) 228, 489, 644, 699, 814, 1031
Alw21I GWGCWC 1 cut(s) 1414
Alw26I GTCTC 3 cut(s) 359, 1213, 1332
AlwI GGATC 5 cut(s) 980, 1085, 1262, 1442, 1511
AlwNI CAGNNNCTG 3 cut(s) 20, 554, 1034
Aor13HI TCCGGA 1 cut(s) 819
AoxI GGCC 1 cut(s) 1244
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 1 cut(s) 928
ArsI GACNNNNNNTTYG 4 cut(s) 375, 407, 1191, 1223
Asp700I GAANNNNTTC 1 cut(s) 237
AspA2I CCTAGG 1 cut(s) 1241
AspLEI GCGC 4 cut(s) 281, 343, 373, 857
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 4 cut(s) 181, 552, 1249, 1406
AsuII TTCGAA 1 cut(s) 926
AvaII GGWCC 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 1241
BanI GGYRCC 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 65, 789
Bbv12I GWGCWC 1 cut(s) 1414
BbvI GCAGC 1 cut(s) 614
BccI CCATC 2 cut(s) 121, 1104
BceAI ACGGC 1 cut(s) 1074
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciVI GTATCC 1 cut(s) 633
BclI TGATCA 3 cut(s) 202, 756, 1534
BcoDI GTCTC 3 cut(s) 359, 1213, 1332
BfaI CTAG 2 cut(s) 105, 1242
BfmI CTRYAG 2 cut(s) 564, 1048
BfoI RGCGCY 2 cut(s) 282, 374
BfrI CTTAAG 1 cut(s) 1333
BfuI GTATCC 1 cut(s) 633
BisI GCNGC 1 cut(s) 603
BlnI CCTAGG 1 cut(s) 1241
BlsI GCNGC 1 cut(s) 604
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 4 cut(s) 25, 26, 280, 583
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 659
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 65, 789
BplI GAGNNNNNCTC 2 cut(s) 277, 309
Bpu14I TTCGAA 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 830
BsaAI YACGTR 1 cut(s) 1065
BsaBI GATNNNNATC 2 cut(s) 112, 1487
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 1332
BsaJI CCNNGG 4 cut(s) 501, 1102, 1241, 1343
BsaWI WCCGGW 1 cut(s) 819
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 995, 1349
Bse1I ACTGG 5 cut(s) 316, 355, 376, 956, 1440
Bse3DI GCAATG 4 cut(s) 295, 909, 1121, 1491
Bse8I GATNNNNATC 2 cut(s) 112, 1487
BseAI TCCGGA 1 cut(s) 819
BseDI CCNNGG 4 cut(s) 501, 1102, 1241, 1343
BseGI GGATG 1 cut(s) 1115
BseJI GATNNNNATC 2 cut(s) 112, 1487
BseLI CCNNNNNNNGG 3 cut(s) 437, 995, 1349
BseMI GCAATG 4 cut(s) 295, 909, 1121, 1491
BseMII CTCAG 3 cut(s) 1101, 1176, 1521
BseNI ACTGG 5 cut(s) 316, 355, 376, 956, 1440
BseRI GAGGAG 2 cut(s) 90, 1178
BseXI GCAGC 1 cut(s) 614
BshFI GGCC 1 cut(s) 1246
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 1414
BsiSI CCGG 1 cut(s) 820
BslFI GGGAC 2 cut(s) 10, 1069
BslI CCNNNNNNNGG 3 cut(s) 437, 995, 1349
BsmAI GTCTC 3 cut(s) 359, 1213, 1332
BsmFI GGGAC 2 cut(s) 10, 1069
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 1246
Bso31I GGTCTC 1 cut(s) 1332
Bsp119I TTCGAA 1 cut(s) 926
Bsp1286I GDGCHC 1 cut(s) 1414
Bsp13I TCCGGA 1 cut(s) 819
Bsp1407I TGTACA 1 cut(s) 1127
BspACI CCGC 1 cut(s) 1272
BspANI GGCC 1 cut(s) 1246
BspCNI CTCAG 3 cut(s) 1100, 1177, 1520
BspEI TCCGGA 1 cut(s) 819
BspHI TCATGA 2 cut(s) 1519, 1531
BspLI GGNNCC 4 cut(s) 25, 26, 280, 583
BspPI GGATC 5 cut(s) 980, 1085, 1262, 1442, 1511
BspT104I TTCGAA 1 cut(s) 926
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 1333
BspTNI GGTCTC 1 cut(s) 1332
BsrDI GCAATG 4 cut(s) 295, 909, 1121, 1491
BsrGI TGTACA 1 cut(s) 1127
BsrI ACTGG 5 cut(s) 316, 355, 376, 956, 1440
BssECI CCNNGG 4 cut(s) 501, 1102, 1241, 1343
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 501, 1241, 1343
Bst4CI ACNGT 2 cut(s) 1036, 1052
BstACI GRCGYC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 1333
BstAPI GCANNNNNTGC 2 cut(s) 512, 1397
BstAUI TGTACA 1 cut(s) 1127
BstBAI YACGTR 1 cut(s) 1065
BstBI TTCGAA 1 cut(s) 926
BstC8I GCNNGC 5 cut(s) 600, 948, 1122, 1146, 1274
BstDEI CTNAG 5 cut(s) 485, 878, 1087, 1185, 1507
BstF5I GGATG 1 cut(s) 1115
BstH2I RGCGCY 2 cut(s) 282, 374
BstHHI GCGC 4 cut(s) 281, 343, 373, 857
BstMAI GTCTC 3 cut(s) 359, 1213, 1332
BstMWI GCNNNNNNNGC 3 cut(s) 285, 512, 1397
BstSFI CTRYAG 2 cut(s) 564, 1048
BstV1I GCAGC 1 cut(s) 614
BstV2I GAAGAC 2 cut(s) 65, 789
BstX2I RGATCY 3 cut(s) 1090, 1447, 1503
BstYI RGATCY 3 cut(s) 1090, 1447, 1503
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 1 cut(s) 1246
BtsCI GGATG 1 cut(s) 1115
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 5 cut(s) 309, 348, 786, 1057, 1447
Cac8I GCNNGC 5 cut(s) 600, 948, 1122, 1146, 1274
CaiI CAGNNNCTG 3 cut(s) 20, 554, 1034
CciI TCATGA 2 cut(s) 1519, 1531
CfoI GCGC 4 cut(s) 281, 343, 373, 857
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 1026, 1128
CspCI CAANNNNNGTGG 2 cut(s) 1249, 1284
CviAII CATG 7 cut(s) 606, 629, 768, 1277, 1418, 1520, 1532
CviQI GTAC 2 cut(s) 1026, 1128
DdeI CTNAG 5 cut(s) 485, 878, 1087, 1185, 1507
DinI GGCGCC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 832
Eco130I CCWWGG 3 cut(s) 501, 1241, 1343
Eco147I AGGCCT 1 cut(s) 1246
Eco31I GGTCTC 1 cut(s) 1332
Eco32I GATATC 3 cut(s) 144, 482, 1282
Eco47I GGWCC 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 24
EcoRV GATATC 3 cut(s) 144, 482, 1282
EcoT14I CCWWGG 3 cut(s) 501, 1241, 1343
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 3 cut(s) 501, 1241, 1343
FaeI CATG 7 cut(s) 609, 632, 771, 1280, 1421, 1523, 1535
FalI AAGNNNNNCTT 4 cut(s) 861, 893, 1327, 1359
FaqI GGGAC 2 cut(s) 10, 1069
FatI CATG 7 cut(s) 605, 628, 767, 1276, 1417, 1519, 1531
FauI CCCGC 1 cut(s) 1265
FbaI TGATCA 3 cut(s) 202, 756, 1534
FblI GTMKAC 3 cut(s) 81, 306, 1038
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 1 cut(s) 1122
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 2 cut(s) 105, 1242
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 4 cut(s) 280, 342, 372, 856
GluI GCNGC 1 cut(s) 603
HaeII RGCGCY 2 cut(s) 282, 374
HaeIII GGCC 1 cut(s) 1246
HapII CCGG 1 cut(s) 820
HhaI GCGC 4 cut(s) 281, 343, 373, 857
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 7 cut(s) 609, 632, 771, 1280, 1421, 1523, 1535
Hin6I GCGC 4 cut(s) 279, 341, 371, 855
HinP1I GCGC 4 cut(s) 279, 341, 371, 855
HinfI GANTC 6 cut(s) 17, 64, 108, 233, 557, 1206
HpaII CCGG 1 cut(s) 820
HphI GGTGA 4 cut(s) 181, 552, 1249, 1406
Hpy166II GTNNAC 4 cut(s) 82, 307, 1039, 1128
Hpy188I TCNGA 5 cut(s) 1090, 1106, 1186, 1378, 1510
Hpy188III TCNNGA 8 cut(s) 820, 866, 1097, 1285, 1451, 1486, 1520, 1532
Hpy8I GTNNAC 4 cut(s) 82, 307, 1039, 1128
HpyAV CCTTC 4 cut(s) 314, 863, 933, 1191
HpyCH4III ACNGT 2 cut(s) 1036, 1052
HpyCH4IV ACGT 3 cut(s) 266, 799, 1064
HpyCH4V TGCA 5 cut(s) 791, 840, 1013, 1400, 1496
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 512, 1397
HpyF3I CTNAG 5 cut(s) 485, 878, 1087, 1185, 1507
HpySE526I ACGT 3 cut(s) 266, 799, 1064
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 7 cut(s) 609, 632, 771, 1280, 1421, 1523, 1535
HspAI GCGC 4 cut(s) 279, 341, 371, 855
KasI GGCGCC 1 cut(s) 278
KflI GGGWCCC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 819
Ksp22I TGATCA 3 cut(s) 202, 756, 1534
LmnI GCTCC 4 cut(s) 298, 494, 641, 1308
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 1 cut(s) 659
MaeI CTAG 2 cut(s) 105, 1242
MaeII ACGT 3 cut(s) 266, 799, 1064
MaeIII GTNAC 3 cut(s) 631, 712, 746
MfeI CAATTG 2 cut(s) 636, 1392
MflI RGATCY 3 cut(s) 1090, 1447, 1503
MhlI GDGCHC 1 cut(s) 1414
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 2 cut(s) 551, 1215
MmeI TCCRAC 1 cut(s) 1013
MroI TCCGGA 1 cut(s) 819
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 8 cut(s) 521, 831, 935, 960, 1077, 1326, 1334, 1546
MslI CAYNNNNRTG 1 cut(s) 902
MspCI CTTAAG 1 cut(s) 1333
MspI CCGG 1 cut(s) 820
MunI CAATTG 2 cut(s) 636, 1392
Mva1269I GAATGC 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 285, 512, 1397
NarI GGCGCC 1 cut(s) 279
NlaIII CATG 7 cut(s) 609, 632, 771, 1280, 1421, 1523, 1535
NlaIV GGNNCC 4 cut(s) 25, 26, 280, 583
NmuCI GTSAC 1 cut(s) 712
NsbI TGCGCA 1 cut(s) 342
NspV TTCGAA 1 cut(s) 926
PagI TCATGA 2 cut(s) 1519, 1531
PceI AGGCCT 1 cut(s) 1246
PctI GAATGC 1 cut(s) 600
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 4 cut(s) 17, 64, 108, 233
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 2 cut(s) 551, 1214
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 2 cut(s) 551, 1214
Ppu21I YACGTR 1 cut(s) 1065
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 25, 26, 280, 583
PspPI GGNCC 1 cut(s) 24
PspPPI RGGWCCY 1 cut(s) 24
PstNI CAGNNNCTG 3 cut(s) 20, 554, 1034
PsuI RGATCY 3 cut(s) 1090, 1447, 1503
RsaI GTAC 2 cut(s) 1027, 1129
RsaNI GTAC 2 cut(s) 1026, 1128
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 8 cut(s) 521, 831, 935, 960, 1077, 1326, 1334, 1546
SatI GCNGC 1 cut(s) 603
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 2 cut(s) 551, 1215
SduI GDGCHC 1 cut(s) 1414
SfaNI GCATC 1 cut(s) 659
SfcI CTRYAG 2 cut(s) 564, 1048
SfoI GGCGCC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 926
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 809, 1333
SmoI CTYRAG 2 cut(s) 809, 1333
SseBI AGGCCT 1 cut(s) 1246
SsiI CCGC 1 cut(s) 1272
SspDI GGCGCC 1 cut(s) 278
SspI AATATT 2 cut(s) 1372, 1514
SspMI CTAG 2 cut(s) 105, 1242
StuI AGGCCT 1 cut(s) 1246
StyI CCWWGG 3 cut(s) 501, 1241, 1343
TaaI ACNGT 2 cut(s) 1036, 1052
TaiI ACGT 3 cut(s) 269, 802, 1067
TaqI TCGA 4 cut(s) 780, 926, 1071, 1204
TatI WGTACW 1 cut(s) 1127
TfiI GAWTC 4 cut(s) 17, 64, 108, 233
Tru1I TTAA 8 cut(s) 521, 831, 935, 960, 1077, 1326, 1334, 1546
Tru9I TTAA 8 cut(s) 521, 831, 935, 960, 1077, 1326, 1334, 1546
TscAI CASTG 5 cut(s) 316, 355, 793, 1057, 1447
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 5 cut(s) 17, 56, 246, 333, 388
TspRI CASTG 5 cut(s) 316, 355, 793, 1057, 1447
Vha464I CTTAAG 1 cut(s) 1333
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 928
XcmI CCANNNNNNNNNTGG 3 cut(s) 499, 635, 1185
XmaJI CCTAGG 1 cut(s) 1241
XmiI GTMKAC 3 cut(s) 81, 306, 1038
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 105, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.