RchiOBHm_Chr3g0477451
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003506
Physical Location & Seq
Forward (+)
23338147 .. 23338787
641 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGTCGACCCTCACTGGTGCACATGTTTGTTTAGTGATATTCTCCGAGGCCGGGAAACCCTACTCTTTCGGCAGTCCCTCTATTGAATCTGTAGACGGCCGAGTCTTGCCGGAGCTACAAAACCAAAACCAAATTAGTGATGATGCCCGGGCTGCACTTGAGGCTAATCGTCAGGCAAGAGTCGACGGTATCCTCAGGATACACAACGACTTAGAAAGCAAGCTGAAAGAAGACAGAGATCGAGCAAAGGAGCTTCGGAAAAGAGAAAGGGCTAGAACAAGCAAAGATCAGGGCGGCCCTTGCTGGTGGGAGAAACCTATGGAGGGACTTGAGTTGGCGGAACTCAAACAGATGCATTCTTCATTTGAACGTCTCCAGAATTATCTATCCTCCTATCTCACCGCCTCTGCTGGTGGCTCCTCATCTGGCGGCGCAACCGGTATCCCTCCTGGTACATTGCCTGCACGCTTCGGATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04013 ko04022 ko04111 ko04371 ko05418 map04011 map04013 map04022 map04111 map04371 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

6.33

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 2 - 23 3.4e-06 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccI GTMKAC 3 cut(s) 5, 93, 183
AciI CCGC 4 cut(s) 294, 338, 402, 429
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 51, 323
AflIII ACRYGT 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 2 cut(s) 86, 368
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 3 cut(s) 115, 223, 253
AluI AGCT 3 cut(s) 115, 223, 253
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 3 cut(s) 48, 97, 295
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 152
AsiGI ACCGGT 1 cut(s) 437
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 3 cut(s) 52, 148, 149
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 147
AxyI CCTNAGG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 3 cut(s) 192, 200, 452
BcnI CCSGG 3 cut(s) 52, 148, 149
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 3 cut(s) 192, 200, 452
BisI GCNGC 3 cut(s) 153, 295, 430
BlsI GCNGC 3 cut(s) 154, 296, 431
Bme1390I CCNGG 4 cut(s) 52, 148, 149, 450
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 4 cut(s) 52, 148, 149, 450
BmsI GCATC 2 cut(s) 133, 342
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 2 cut(s) 179, 350
BpuMI CCSGG 3 cut(s) 52, 148, 149
BsaJI CCNNGG 2 cut(s) 45, 147
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 323
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 19
Bse21I CCTNAGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 45, 147
BseLI CCNNNNNNNGG 2 cut(s) 51, 323
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 409
BseSI GKGCMC 1 cut(s) 22
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 2 cut(s) 138, 447
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 50, 99, 297
BshTI ACCGGT 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 51, 110, 148, 438
BslFI GGGAC 2 cut(s) 60, 339
BslI CCNNNNNNNGG 2 cut(s) 51, 323
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 2 cut(s) 60, 339
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 3 cut(s) 50, 99, 297
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 238, 286
BspACI CCGC 4 cut(s) 294, 338, 402, 429
BspANI GGCC 3 cut(s) 50, 99, 297
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 2 cut(s) 45, 147
BssMI GATC 2 cut(s) 238, 286
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 221, 462, 466
BstDEI CTNAG 2 cut(s) 194, 211
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 2 cut(s) 241, 289
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 238, 286
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 300
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 4 cut(s) 50, 146, 147, 448
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 237
BstZI CGGCCG 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 194
BsuI GTATCC 3 cut(s) 192, 200, 452
BsuRI GGCC 3 cut(s) 50, 99, 297
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 221, 462, 466
CfoI GCGC 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 296
Cfr9I CCCGGG 1 cut(s) 147
Csp6I GTAC 1 cut(s) 453
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 1 cut(s) 23
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 194, 211
DpnI GATC 2 cut(s) 240, 288
DpnII GATC 2 cut(s) 238, 286
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 97
EagI CGGCCG 1 cut(s) 97
EciI GGCGGA 1 cut(s) 353
EclXI CGGCCG 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 1 cut(s) 26
FaiI YATR 2 cut(s) 24, 320
FaqI GGGAC 2 cut(s) 60, 339
FatI CATG 1 cut(s) 22
FblI GTMKAC 3 cut(s) 5, 93, 183
Fnu4HI GCNGC 3 cut(s) 153, 295, 430
Fsp4HI GCNGC 3 cut(s) 153, 295, 430
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 433
GluI GCNGC 3 cut(s) 153, 295, 430
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 3 cut(s) 50, 99, 297
HapII CCGG 4 cut(s) 51, 110, 148, 438
HhaI GCGC 1 cut(s) 434
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 2 cut(s) 6, 184
HindII GTYRAC 2 cut(s) 6, 184
HinfI GANTC 3 cut(s) 86, 102, 180
HpaII CCGG 4 cut(s) 51, 110, 148, 438
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 4 cut(s) 6, 20, 94, 184
Hpy188I TCNGA 3 cut(s) 46, 258, 473
Hpy188III TCNNGA 2 cut(s) 196, 376
Hpy8I GTNNAC 4 cut(s) 6, 20, 94, 184
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 20, 155, 355, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 300
HpyF3I CTNAG 2 cut(s) 194, 211
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 432
Kzo9I GATC 2 cut(s) 238, 286
LmnI GCTCC 3 cut(s) 112, 250, 422
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 133, 342
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 370
MalI GATC 2 cut(s) 240, 288
MboI GATC 2 cut(s) 238, 286
MboII GAAGA 2 cut(s) 242, 351
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 2 cut(s) 132, 379
MlyI GAGTC 2 cut(s) 111, 189
Mph1103I ATGCAT 1 cut(s) 357
MspI CCGG 4 cut(s) 51, 110, 148, 438
MspR9I CCNGG 4 cut(s) 52, 148, 149, 450
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 300
NciI CCSGG 3 cut(s) 52, 148, 149
NdeII GATC 2 cut(s) 238, 286
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 3 cut(s) 154, 296, 431
PleI GAGTC 2 cut(s) 110, 188
PpsI GAGTC 2 cut(s) 110, 188
PscI ACATGT 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 296
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SalI GTCGAC 2 cut(s) 4, 182
SatI GCNGC 3 cut(s) 153, 295, 430
Sau3AI GATC 2 cut(s) 238, 286
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 111, 189
ScrFI CCNGG 4 cut(s) 52, 148, 149, 450
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 117, 225, 255, 319, 373
SfaNI GCATC 2 cut(s) 133, 342
SfcI CTRYAG 1 cut(s) 90
SmaI CCCGGG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 158, 329
SmoI CTYRAG 2 cut(s) 158, 329
SrfI GCCCGGGC 1 cut(s) 149
Sse9I AATT 2 cut(s) 132, 379
SsiI CCGC 4 cut(s) 294, 338, 402, 429
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 4 cut(s) 50, 146, 147, 448
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 5, 183, 241
TasI AATT 2 cut(s) 132, 379
TauI GCSGC 2 cut(s) 297, 432
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 19
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 351
TspMI CCCGGG 1 cut(s) 147
TspRI CASTG 1 cut(s) 19
VneI GTGCAC 1 cut(s) 18
XceI RCATGY 1 cut(s) 26
XmaI CCCGGG 1 cut(s) 147
XmiI GTMKAC 3 cut(s) 5, 93, 183
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.