RchiOBHm_Chr3g0481351

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001107
Physical Location & Seq
Forward (+)
27409077 .. 27416838
7762 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1464 bp
ATGGTGAATGTTTGCAAAGCTGATGAGCTAGGCGTGGAGATAGTACATATTGCACTTCCTACACTACTAGCGTTAGTAGCAGACCCTGCTGCTTCCCTAATTGACACAGCGTTTGTTGGCCATATAGGTCCAGTGGAGCTCGCAGCTGTGGGAATTTCTATTGCTGTTTTCAATCAAGTATCAAAAATAGCAATTTTCCCACTTGTCAGTATTACAACCTCTTTTGTTGCTGAAGAAGATACTACGGAACCATTAAGTACTAAAGAACAAGTATATGAAGAATTTGAAAATGCTAATTCCGTCAACAAGGAAATGGAAGTACTCAAACCACTTGTTGACTCTATGCCATCATCCATCACCAATGATAGTAGAGAAATGGTCAAACTTGAGCATGTCAGAAGGCGTATTCCATCTGCTTCATCAGCATTGGTTATTGGCAGCGTCCTGGGGGTTATTCAAACTCTATTCCTAATTTTTGCTGCAAATCCCATCCTAAATTACATGGGGGTAGATTCTAATTCTCCTATGTTAAGACCAGCGAGACAATACCTGACACTAAGGTCACTCGGTGCTCCTGCAGTTCTTCTCTCTTTGGCCATGCAAGGGGTTTTCCGTGGTTTTAAGGATACAAAAACTCCTTTATATGCTACAATTGTGGGAGATACAGTAAATATCATTTTGGACCCAATATTAATGTTTGTACTCCATATGGGCATTACTGGTGCGGCCATTGCCCATGTTATCTCTCAGTATTTAATCTCCCTGATACTGTTATGGAGATTAAACAAACAAGTTGATCTCCTAACCCCAGGCATCAAAGATCTACGAATTGGCCAGTTTCTGAAAAATGGGGGTATGTTATTGGTGAGAGTTATAGCTGCAACATTCTGTGTCACCCTGGCAGCATCATTAGCTGCACGGCAGGGATCGACATCAATGGCAGCATTTCAAGTTTGCTTGCAGATTTGGCTTGCAGCCTCTTTGCTTGCGGATGGGTTAGCTGTGGCTGGACAAGCAATCCTTGCAAGTGCATTTGCGAGGAAGGATCACAGCAAAGTCGTTGCCACAGCTTCACGTGTATTGCAGATGGCTTTGGTTCTAGGGATAGTGCTCTCAGTCATCCTTACAGTTGTACTAAAGTTCGCGTCAAGATTATTTACCGATGATATCAATGTTTTGCACCTTATAAGTTTAGGCATTCCGTTTATTGCAGTGACTCAGCCCGTTAATGCTCTGGCATTTGTTTTTGATGGAGTAAATTATGGAGCATCAGATTTTGCATATTCTGCCTACTCAATGGTGTTGGTGGCTTTAGTGAGCATATTGTGCCTGTTTCTATTATCATCAAGCCATGGCTTTGTTGGTATCTGGGTTGCTTTAACAATCTTCATGAGTTTGCGCACAGTGGTTGGATTTTGGAGGATAGGGACTGGAACTGGACCATGGAGCTTTCTGAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

487

Amino Acids

52.26

Weight (kDa)

6.72

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 139 - 230 1.6e-12 MatE
MatE PF01554 290 - 442 3.8e-13 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1187
AasI GACNNNNNNGTC 1 cut(s) 559
Acc16I TGCGCA 1 cut(s) 1400
AccII CGCG 1 cut(s) 1145
AciI CCGC 2 cut(s) 725, 989
AclWI GGATC 2 cut(s) 934, 1053
AcoI YGGCCR 4 cut(s) 118, 594, 726, 832
AcsI RAATTY 2 cut(s) 153, 281
AcuI CTGAAG 1 cut(s) 252
AcvI CACGTG 1 cut(s) 1076
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 5 cut(s) 45, 259, 321, 702, 1134
AfiI CCNNNNNNNGG 1 cut(s) 603
AflIII ACRYGT 1 cut(s) 1075
AgsI TTSAA 4 cut(s) 172, 287, 458, 950
AjnI CCWGG 3 cut(s) 444, 808, 897
AluBI AGCT 9 cut(s) 20, 28, 139, 146, 878, 914, 1001, 1070, 1449
AluI AGCT 9 cut(s) 20, 28, 139, 146, 878, 914, 1001, 1070, 1449
Alw21I GWGCWC 3 cut(s) 141, 574, 1113
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 2 cut(s) 934, 1053
AlwNI CAGNNNCTG 2 cut(s) 86, 841
AoxI GGCC 4 cut(s) 118, 594, 726, 832
ApeKI GCWGC 9 cut(s) 89, 143, 438, 479, 878, 902, 914, 941, 974
ApoI RAATTY 2 cut(s) 153, 281
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AseI ATTAAT 1 cut(s) 692
AspLEI GCGC 1 cut(s) 1401
AspS9I GGNCC 3 cut(s) 128, 682, 1439
AsuHPI GGTGA 4 cut(s) 16, 349, 877, 886
AvaII GGWCC 3 cut(s) 128, 682, 1439
BalI TGGCCA 3 cut(s) 120, 596, 834
BanII GRGCYC 1 cut(s) 141
BbrPI CACGTG 1 cut(s) 1076
Bbv12I GWGCWC 3 cut(s) 141, 574, 1113
BbvI GCAGC 9 cut(s) 76, 155, 450, 466, 865, 901, 914, 953, 986
BccI CCATC 7 cut(s) 355, 362, 418, 497, 986, 1081, 1244
BceAI ACGGC 1 cut(s) 935
BciT130I CCWGG 3 cut(s) 446, 810, 899
BciVI GTATCC 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 3 cut(s) 29, 68, 1100
BfmI CTRYAG 1 cut(s) 576
BfuI GTATCC 1 cut(s) 619
BglII AGATCT 1 cut(s) 820
BmcAI AGTACT 2 cut(s) 259, 321
Bme1390I CCNGG 3 cut(s) 446, 810, 899
Bme18I GGWCC 3 cut(s) 128, 682, 1439
BmgT120I GGNCC 3 cut(s) 128, 682, 1439
BmiI GGNNCC 2 cut(s) 249, 684
BmrFI CCNGG 3 cut(s) 446, 810, 899
BmsI GCATC 3 cut(s) 822, 914, 1277
BpuEI CTTGAG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 1076
BsaBI GATNNNNATC 1 cut(s) 931
BsaJI CCNNGG 6 cut(s) 445, 613, 808, 897, 1351, 1442
BsaXI ACNNNNNCTCC 4 cut(s) 619, 649, 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse1I ACTGG 5 cut(s) 131, 724, 835, 1435, 1441
Bse3DI GCAATG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 931
BseBI CCWGG 3 cut(s) 446, 810, 899
BseDI CCNNGG 6 cut(s) 445, 613, 808, 897, 1351, 1442
BseGI GGATG 4 cut(s) 350, 489, 997, 1119
BseJI GATNNNNATC 1 cut(s) 931
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 4 cut(s) 761, 1128, 1232, 1445
BseNI ACTGG 5 cut(s) 131, 724, 835, 1435, 1441
BseXI GCAGC 9 cut(s) 76, 155, 450, 466, 865, 901, 914, 953, 986
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 1 cut(s) 1145
BshFI GGCC 4 cut(s) 120, 596, 728, 834
BsiHKAI GWGCWC 3 cut(s) 141, 574, 1113
BslFI GGGAC 1 cut(s) 1441
BslI CCNNNNNNNGG 1 cut(s) 603
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 1441
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 4 cut(s) 120, 596, 728, 834
Bsp1286I GDGCHC 3 cut(s) 141, 574, 1113
Bsp143I GATC 4 cut(s) 796, 820, 926, 1045
Bsp19I CCATGG 2 cut(s) 1351, 1442
BspACI CCGC 2 cut(s) 725, 989
BspANI GGCC 4 cut(s) 120, 596, 728, 834
BspCNI CTCAG 4 cut(s) 760, 1127, 1231, 1446
BspFNI CGCG 1 cut(s) 1145
BspHI TCATGA 1 cut(s) 1389
BspLI GGNNCC 2 cut(s) 249, 684
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 2 cut(s) 934, 1053
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 5 cut(s) 131, 724, 835, 1435, 1441
BssECI CCNNGG 6 cut(s) 445, 613, 808, 897, 1351, 1442
BssMI GATC 4 cut(s) 796, 820, 926, 1045
BssT1I CCWWGG 2 cut(s) 1351, 1442
Bst2UI CCWGG 3 cut(s) 446, 810, 899
Bst4CI ACNGT 4 cut(s) 667, 771, 1129, 1405
BstAPI GCANNNNNTGC 4 cut(s) 86, 1022, 1286, 1326
BstBAI YACGTR 1 cut(s) 1076
BstC8I GCNNGC 4 cut(s) 141, 959, 972, 987
BstDEI CTNAG 5 cut(s) 557, 747, 1114, 1218, 1454
BstDSI CCRYGG 3 cut(s) 613, 1351, 1442
BstF5I GGATG 4 cut(s) 350, 489, 997, 1119
BstFNI CGCG 1 cut(s) 1145
BstHHI GCGC 1 cut(s) 1401
BstKTI GATC 4 cut(s) 799, 823, 929, 1048
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 4 cut(s) 796, 820, 926, 1045
BstNI CCWGG 3 cut(s) 446, 810, 899
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 444, 808, 897
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 1145
BstV1I GCAGC 9 cut(s) 76, 155, 450, 466, 865, 901, 914, 953, 986
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 4 cut(s) 120, 596, 728, 834
BtgI CCRYGG 3 cut(s) 613, 1351, 1442
BtsCI GGATG 4 cut(s) 350, 489, 997, 1119
BtsI GCAGTG 1 cut(s) 1218
BtsIMutI CAGTG 3 cut(s) 138, 1218, 1410
Cac8I GCNNGC 4 cut(s) 141, 959, 972, 987
CaiI CAGNNNCTG 2 cut(s) 86, 841
CciI TCATGA 1 cut(s) 1389
CfoI GCGC 1 cut(s) 1401
Cfr13I GGNCC 3 cut(s) 128, 682, 1439
CseI GACGC 2 cut(s) 430, 1134
Csp6I GTAC 5 cut(s) 44, 258, 320, 701, 1133
CviAII CATG 7 cut(s) 392, 502, 598, 737, 1352, 1390, 1443
CviQI GTAC 5 cut(s) 44, 258, 320, 701, 1133
DdeI CTNAG 5 cut(s) 557, 747, 1114, 1218, 1454
DpnI GATC 4 cut(s) 798, 822, 928, 1047
DpnII GATC 4 cut(s) 796, 820, 926, 1045
DraIII CACNNNGTG 1 cut(s) 569
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 4 cut(s) 118, 594, 726, 832
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 1351, 1442
Eco24I GRGCYC 1 cut(s) 141
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 3 cut(s) 128, 682, 1439
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 252
Eco72I CACGTG 1 cut(s) 1076
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 444, 808, 897
EcoRV GATATC 1 cut(s) 1168
EcoT14I CCWWGG 2 cut(s) 1351, 1442
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 2 cut(s) 1351, 1442
FaeI CATG 7 cut(s) 395, 505, 601, 740, 1355, 1393, 1446
FalI AAGNNNNNCTT 2 cut(s) 1005, 1037
FaqI GGGAC 1 cut(s) 1441
FatI CATG 7 cut(s) 391, 501, 597, 736, 1351, 1389, 1442
FauNDI CATATG 1 cut(s) 708
FokI GGATG 4 cut(s) 337, 476, 1004, 1106
FriOI GRGCYC 1 cut(s) 141
FspBI CTAG 3 cut(s) 29, 68, 1100
FspI TGCGCA 1 cut(s) 1400
GlaI GCGC 1 cut(s) 1400
HaeIII GGCC 4 cut(s) 120, 596, 728, 834
HgaI GACGC 2 cut(s) 430, 1134
HhaI GCGC 1 cut(s) 1401
Hin1II CATG 7 cut(s) 395, 505, 601, 740, 1355, 1393, 1446
Hin6I GCGC 1 cut(s) 1399
HinP1I GCGC 1 cut(s) 1399
HincII GTYRAC 2 cut(s) 304, 337
HindII GTYRAC 2 cut(s) 304, 337
HinfI GANTC 3 cut(s) 338, 512, 1216
HphI GGTGA 4 cut(s) 16, 349, 877, 886
Hpy166II GTNNAC 2 cut(s) 304, 337
Hpy188I TCNGA 4 cut(s) 398, 843, 1273, 1455
Hpy188III TCNNGA 2 cut(s) 1149, 1390
Hpy8I GTNNAC 2 cut(s) 304, 337
HpyAV CCTTC 2 cut(s) 393, 1036
HpyCH4III ACNGT 4 cut(s) 667, 771, 1129, 1405
HpyCH4IV ACGT 1 cut(s) 1075
HpyF3I CTNAG 5 cut(s) 557, 747, 1114, 1218, 1454
HpySE526I ACGT 1 cut(s) 1075
Hsp92II CATG 7 cut(s) 395, 505, 601, 740, 1355, 1393, 1446
HspAI GCGC 1 cut(s) 1399
Kzo9I GATC 4 cut(s) 796, 820, 926, 1045
LmnI GCTCC 4 cut(s) 136, 577, 1265, 1446
Lsp1109I GCAGC 9 cut(s) 76, 155, 450, 466, 865, 901, 914, 953, 986
LweI GCATC 3 cut(s) 822, 914, 1277
MaeI CTAG 3 cut(s) 29, 68, 1100
MaeII ACGT 1 cut(s) 1075
MaeIII GTNAC 3 cut(s) 561, 892, 1213
MalI GATC 4 cut(s) 798, 822, 928, 1047
MboI GATC 4 cut(s) 796, 820, 926, 1045
MboII GAAGA 5 cut(s) 245, 248, 290, 575, 1378
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 3 cut(s) 141, 574, 1113
MlsI TGGCCA 3 cut(s) 120, 596, 834
MluNI TGGCCA 3 cut(s) 120, 596, 834
MlyI GAGTC 2 cut(s) 332, 1210
MmeI TCCRAC 1 cut(s) 1390
MnlI CCTC 5 cut(s) 229, 988, 1032, 1413, 1449
Mox20I TGGCCA 3 cut(s) 120, 596, 834
MscI TGGCCA 3 cut(s) 120, 596, 834
MseI TTAA 8 cut(s) 254, 530, 621, 692, 755, 782, 1227, 1379
Msp20I TGGCCA 3 cut(s) 120, 596, 834
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 3 cut(s) 446, 810, 899
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 3 cut(s) 446, 810, 899
MvnI CGCG 1 cut(s) 1145
NcoI CCATGG 2 cut(s) 1351, 1442
NdeI CATATG 1 cut(s) 708
NdeII GATC 4 cut(s) 796, 820, 926, 1045
NlaIII CATG 7 cut(s) 395, 505, 601, 740, 1355, 1393, 1446
NlaIV GGNNCC 2 cut(s) 249, 684
NmuCI GTSAC 3 cut(s) 561, 892, 1213
NsbI TGCGCA 1 cut(s) 1400
NspI RCATGY 1 cut(s) 395
PagI TCATGA 1 cut(s) 1389
PctI GAATGC 1 cut(s) 1197
PfeI GAWTC 1 cut(s) 512
PleI GAGTC 2 cut(s) 332, 1210
PmaCI CACGTG 1 cut(s) 1076
PmlI CACGTG 1 cut(s) 1076
PpsI GAGTC 2 cut(s) 332, 1210
Ppu21I YACGTR 1 cut(s) 1076
PshBI ATTAAT 1 cut(s) 692
PsiI TTATAA 1 cut(s) 1187
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 3 cut(s) 444, 808, 897
PspCI CACGTG 1 cut(s) 1076
PspGI CCWGG 3 cut(s) 444, 808, 897
PspN4I GGNNCC 2 cut(s) 249, 684
PspPI GGNCC 3 cut(s) 128, 682, 1439
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 86, 841
PsuI RGATCY 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 5 cut(s) 45, 259, 321, 702, 1134
RsaNI GTAC 5 cut(s) 44, 258, 320, 701, 1133
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 8 cut(s) 254, 530, 621, 692, 755, 782, 1227, 1379
Sau3AI GATC 4 cut(s) 796, 820, 926, 1045
Sau96I GGNCC 3 cut(s) 128, 682, 1439
ScaI AGTACT 2 cut(s) 259, 321
SchI GAGTC 2 cut(s) 332, 1210
ScrFI CCNGG 3 cut(s) 446, 810, 899
SduI GDGCHC 3 cut(s) 141, 574, 1113
SfaNI GCATC 3 cut(s) 822, 914, 1277
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 3 cut(s) 128, 682, 1439
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SsiI CCGC 2 cut(s) 725, 989
SspI AATATT 1 cut(s) 690
SspMI CTAG 3 cut(s) 29, 68, 1100
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 444, 808, 897
StyI CCWWGG 2 cut(s) 1351, 1442
TaaI ACNGT 4 cut(s) 667, 771, 1129, 1405
TaiI ACGT 1 cut(s) 1078
TaqI TCGA 1 cut(s) 929
TatI WGTACW 5 cut(s) 43, 257, 319, 700, 1132
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 8 cut(s) 254, 530, 621, 692, 755, 782, 1227, 1379
Tru9I TTAA 8 cut(s) 254, 530, 621, 692, 755, 782, 1227, 1379
TscAI CASTG 3 cut(s) 138, 1218, 1410
TseFI GTSAC 3 cut(s) 561, 892, 1213
TseI GCWGC 9 cut(s) 89, 143, 438, 479, 878, 902, 914, 941, 974
Tsp45I GTSAC 3 cut(s) 561, 892, 1213
TspDTI ATGAA 3 cut(s) 291, 408, 1378
TspGWI ACGGA 4 cut(s) 260, 289, 602, 1191
TspRI CASTG 3 cut(s) 138, 1218, 1410
VpaK11BI GGWCC 3 cut(s) 128, 682, 1439
VspI ATTAAT 1 cut(s) 692
XapI RAATTY 2 cut(s) 153, 281
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 1358
XspI CTAG 3 cut(s) 29, 68, 1100
ZrmI AGTACT 2 cut(s) 259, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.