RchiOBHm_Chr2g0094241

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005421
Physical Location & Seq
Reverse (-)
7228460 .. 7229773
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1314 bp
ATGGCTTCATCACAAACACTTCCTTCTGACCTCTATTTCGAGATTCTGACCCGAGCATCCTTCGATACTGTTGGCCGGTGCAGGCTCGTTTCGAAACAATGGAACCACCTTACATACGATTCAAGTTTCATAAATCAACTATCTCAGAGAACCAAAACAACACACGGGGTTTTCATTCAAAGCTCGATCAGCAGTAATTATATATCCACCTTTGTTCAAGCTGTGGGTAACAACGACGTCTCCAACTCCGAACAGCTGTCCTTAAATTTCCTGCCTCAGCCGGTGAAGATTGAAGCTGCTCATCAGGGTATACTCGTTTGTGTAAGCCAGAAACGTGTTCCTCAATACTATGTCTGCAAGCCAACCACTAGGGAATGGGAGCAGATACACAACCCAAAAACGAGGTATATGACGGTAAAAATTGCCTTAATGGTGTTACGATCAAGCCCGTTAAGGTACAAGATCGTCCGGTTCTCAGAACCAAAGTCTCCATATTCCAAGTACAAGTCGCAGGAACACTGCTACAACCTTAGGTGTGAGGTATATGATTCCAAAGCTCGAGCATGGAAACAGTTGAACAATGTAGCTTTACCCAAAGATGCTTATATCTTGAGGTTTCAACCTGCAGTATCGGCATGCGGTGCACTCCACTGGCTTTTGTCAGACAACCGAGTCGGAATCTTTGCTTTTCATGTAGATGAAGAGAACTGGGAAATATTTGCACCACCGTGCTTGGCAGTCGATAATGTCAATGGGAATCAGGTGGTGGAGTACCAAGGCCGCCTTGCATGGATTTGTGAAGTAGAGGACTCGATGGAGCTATGGGTTATGGAAGACTACAAGAACAAAGTATGGAGTAAAAGACAGATACTAAGGATCAAAGGACTGGATCGTCTTGCTTCTTTTGCAACTCTTTGCAATAATGATGTTGCACTCATGAGAGGATTTTTCAAGATAATATTTTACAAGTTTGGAGATTATAGCTCCAAGATAGCAAATCTAGAGGAAATTTCTCGACCAGATGAGATCTTCATGTTGCAATCAGATTCAGAGCCTACTAGATTGAAGGGTCCATTGAAGTCTTGGGTAATAATAAGATGGTTTCGTTCGATTAAAAAGAAGTGGTCTCCAATAACTAAGTATCGCCTCAGGACTGTTGGGAAATTCTGCAGTACATACGGGACGTATGCCATAGAGTTTGTGTTTCTGTTTTTGGCTTTGAGGACACAATTAATCCAAAGATTGACACACTATCTATATGGCGTAACACATGTATTGCAAACGGTCTTGGAATACTTGTTAGCTGGTGCTTGA

Protein Analysis

437

Amino Acids

50.73

Weight (kDa)

9.35

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 47 5.4e-06 F-box-like
FBA_1 PF07734 94 - 287 4.2e-14 F-box associated beta propeller domain
FBA_3 PF08268 98 - 291 2.8e-14 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 99 - 240 1.7e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 671, 891
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 310
AciI CCGC 2 cut(s) 639, 781
AclWI GGATC 2 cut(s) 884, 897
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 3 cut(s) 265, 1008, 1163
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 4 cut(s) 458, 503, 773, 1174
AflIII ACRYGT 2 cut(s) 334, 1270
AgsI TTSAA 9 cut(s) 123, 179, 218, 293, 577, 620, 952, 1066, 1078
AleI CACNNNNGTG 1 cut(s) 727
AluBI AGCT 9 cut(s) 183, 221, 256, 296, 557, 587, 820, 984, 1304
AluI AGCT 9 cut(s) 183, 221, 256, 296, 557, 587, 820, 984, 1304
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 244, 492, 1131
Alw44I GTGCAC 1 cut(s) 642
AlwI GGATC 2 cut(s) 884, 897
Ama87I CYCGRG 2 cut(s) 51, 558
AoxI GGCC 2 cut(s) 73, 778
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 3 cut(s) 265, 1008, 1163
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AseI ATTAAT 1 cut(s) 1232
AspS9I GGNCC 1 cut(s) 1070
AsuHPI GGTGA 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 51, 558
AvaII GGWCC 1 cut(s) 1070
AxyI CCTNAGG 2 cut(s) 530, 1148
BaeGI GKGCMC 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 646
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 808, 1092
BcoDI GTCTC 3 cut(s) 244, 492, 1131
BfaI CTAG 3 cut(s) 369, 1001, 1059
BfmI CTRYAG 2 cut(s) 624, 1168
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 1 cut(s) 1026
BisI GCNGC 2 cut(s) 297, 781
BlsI GCNGC 2 cut(s) 298, 782
Bme18I GGWCC 1 cut(s) 1070
BmeT110I CYCGRG 2 cut(s) 51, 558
BmgT120I GGNCC 1 cut(s) 1070
BmiI GGNNCC 2 cut(s) 104, 1071
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 2 cut(s) 65, 589
BmuI ACTGGG 1 cut(s) 718
BpiI GAAGAC 1 cut(s) 840
Bpu10I CCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 1131
BsaJI CCNNGG 1 cut(s) 775
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse118I RCCGGY 2 cut(s) 75, 280
Bse1I ACTGG 3 cut(s) 656, 713, 891
Bse21I CCTNAGG 2 cut(s) 530, 1148
BseDI CCNNGG 1 cut(s) 775
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 4 cut(s) 158, 290, 489, 1162
BseNI ACTGG 3 cut(s) 656, 713, 891
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 2 cut(s) 75, 780
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 2 cut(s) 51, 558
BsiSI CCGG 3 cut(s) 76, 281, 469
BslFI GGGAC 1 cut(s) 1195
BsmAI GTCTC 3 cut(s) 244, 492, 1131
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 1195
BsnI GGCC 2 cut(s) 75, 780
Bso31I GGTCTC 1 cut(s) 1131
BsoBI CYCGRG 2 cut(s) 51, 558
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
BspACI CCGC 2 cut(s) 639, 781
BspANI GGCC 2 cut(s) 75, 780
BspCNI CTCAG 4 cut(s) 157, 289, 488, 1161
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 2 cut(s) 104, 1071
BspMAI CTGCAG 2 cut(s) 628, 1172
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 2 cut(s) 884, 897
BspT104I TTCGAA 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 1131
BsrFI RCCGGY 2 cut(s) 75, 280
BsrI ACTGG 3 cut(s) 656, 713, 891
BssAI RCCGGY 2 cut(s) 75, 280
BssECI CCNNGG 1 cut(s) 775
BssMI GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
BssNAI GTATAC 1 cut(s) 311
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 775
Bst1107I GTATAC 1 cut(s) 311
Bst4CI ACNGT 6 cut(s) 70, 415, 573, 729, 1156, 1285
Bst6I CTCTTC 1 cut(s) 696
BstACI GRCGYC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 83, 359, 637
BstDEI CTNAG 7 cut(s) 144, 276, 475, 530, 872, 1137, 1148
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 6 cut(s) 189, 443, 465, 879, 892, 1029
BstMAI GTCTC 3 cut(s) 244, 492, 1131
BstMBI GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 189, 632, 641, 905
BstNSI RCATGY 2 cut(s) 639, 1274
BstSFI CTRYAG 2 cut(s) 624, 1168
BstSLI GKGCMC 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 1 cut(s) 1026
BstYI RGATCY 1 cut(s) 1026
BstZ17I GTATAC 1 cut(s) 311
Bsu36I CCTNAGG 2 cut(s) 530, 1148
BsuRI GGCC 2 cut(s) 75, 780
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 517, 649
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 3 cut(s) 83, 359, 637
CciI TCATGA 1 cut(s) 936
Cfr10I RCCGGY 2 cut(s) 75, 280
Cfr13I GGNCC 1 cut(s) 1070
Csp6I GTAC 4 cut(s) 457, 502, 772, 1173
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 7 cut(s) 564, 636, 692, 789, 937, 1033, 1271
CviQI GTAC 4 cut(s) 457, 502, 772, 1173
DdeI CTNAG 7 cut(s) 144, 276, 475, 530, 872, 1137, 1148
DpnI GATC 6 cut(s) 188, 442, 464, 878, 891, 1028
DpnII GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
DrdI GACNNNNNNGTC 2 cut(s) 671, 891
DseDI GACNNNNNNGTC 2 cut(s) 671, 891
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Eco130I CCWWGG 1 cut(s) 775
Eco31I GGTCTC 1 cut(s) 1131
Eco47I GGWCC 1 cut(s) 1070
Eco81I CCTNAGG 2 cut(s) 530, 1148
Eco88I CYCGRG 2 cut(s) 51, 558
EcoT14I CCWWGG 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 775
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 7 cut(s) 567, 639, 695, 792, 940, 1036, 1274
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FaqI GGGAC 1 cut(s) 1195
FatI CATG 7 cut(s) 563, 635, 691, 788, 936, 1032, 1270
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 297, 781
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 297, 781
FspBI CTAG 3 cut(s) 369, 1001, 1059
GluI GCNGC 2 cut(s) 297, 781
HaeIII GGCC 2 cut(s) 75, 780
HapII CCGG 3 cut(s) 76, 281, 469
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 7 cut(s) 567, 639, 695, 792, 940, 1036, 1274
HinfI GANTC 8 cut(s) 43, 119, 548, 672, 678, 757, 809, 1046
HpaII CCGG 3 cut(s) 76, 281, 469
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 311, 644
Hpy188I TCNGA 9 cut(s) 28, 48, 147, 250, 478, 664, 677, 1045, 1051
Hpy188III TCNNGA 7 cut(s) 40, 610, 937, 952, 1001, 1014, 1150
Hpy8I GTNNAC 2 cut(s) 311, 644
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 33, 70, 1060
HpyCH4III ACNGT 6 cut(s) 70, 415, 573, 729, 1156, 1285
HpyCH4IV ACGT 3 cut(s) 237, 334, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 632, 641, 905
HpyF3I CTNAG 7 cut(s) 144, 276, 475, 530, 872, 1137, 1148
HpySE526I ACGT 3 cut(s) 237, 334, 1184
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 7 cut(s) 567, 639, 695, 792, 940, 1036, 1274
Kzo9I GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
LmnI GCTCC 3 cut(s) 379, 817, 989
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 2 cut(s) 65, 589
MaeI CTAG 3 cut(s) 369, 1001, 1059
MaeII ACGT 3 cut(s) 237, 334, 1184
MaeIII GTNAC 3 cut(s) 227, 435, 1264
MalI GATC 6 cut(s) 188, 442, 464, 878, 891, 1028
MboI GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
MboII GAAGA 4 cut(s) 298, 713, 845, 1021
MflI RGATCY 1 cut(s) 1026
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 6 cut(s) 196, 265, 420, 1008, 1163, 1229
MlyI GAGTC 2 cut(s) 681, 803
MmeI TCCRAC 2 cut(s) 267, 655
MseI TTAA 5 cut(s) 263, 428, 452, 1113, 1232
MslI CAYNNNNRTG 2 cut(s) 696, 727
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 3 cut(s) 76, 281, 469
MwoI GCNNNNNNNGC 4 cut(s) 189, 632, 641, 905
NdeII GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
NlaIII CATG 7 cut(s) 567, 639, 695, 792, 940, 1036, 1274
NlaIV GGNNCC 2 cut(s) 104, 1071
NspI RCATGY 2 cut(s) 639, 1274
NspV TTCGAA 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 727
PaeI GCATGC 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 558
PagI TCATGA 1 cut(s) 936
PciI ACATGT 1 cut(s) 1270
PfeI GAWTC 6 cut(s) 43, 119, 548, 678, 757, 1046
PkrI GCNGC 2 cut(s) 298, 782
PleI GAGTC 2 cut(s) 680, 803
PpsI GAGTC 2 cut(s) 680, 803
PscI ACATGT 1 cut(s) 1270
PshBI ATTAAT 1 cut(s) 1232
PspN4I GGNNCC 2 cut(s) 104, 1071
PspPI GGNCC 1 cut(s) 1070
PspXI VCTCGAGB 1 cut(s) 558
PstI CTGCAG 2 cut(s) 628, 1172
PsuI RGATCY 1 cut(s) 1026
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 4 cut(s) 458, 503, 773, 1174
RsaNI GTAC 4 cut(s) 457, 502, 772, 1173
RseI CAYNNNNRTG 2 cut(s) 696, 727
SaqAI TTAA 5 cut(s) 263, 428, 452, 1113, 1232
SatI GCNGC 2 cut(s) 297, 781
Sau3AI GATC 6 cut(s) 186, 440, 462, 876, 889, 1026
Sau96I GGNCC 1 cut(s) 1070
SchI GAGTC 2 cut(s) 681, 803
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 2 cut(s) 65, 589
SfcI CTRYAG 2 cut(s) 624, 1168
Sfr274I CTCGAG 1 cut(s) 558
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 1070
SlaI CTCGAG 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 696, 727
SmlI CTYRAG 2 cut(s) 558, 610
SmoI CTYRAG 2 cut(s) 558, 610
SphI GCATGC 1 cut(s) 639
Sse9I AATT 6 cut(s) 196, 265, 420, 1008, 1163, 1229
SsiI CCGC 2 cut(s) 639, 781
SspI AATATT 2 cut(s) 717, 960
SspMI CTAG 3 cut(s) 369, 1001, 1059
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 6 cut(s) 70, 415, 573, 729, 1156, 1285
TaiI ACGT 3 cut(s) 240, 337, 1187
TaqI TCGA 9 cut(s) 39, 63, 92, 185, 559, 741, 812, 1015, 1109
TasI AATT 6 cut(s) 196, 265, 420, 1008, 1163, 1229
TatI WGTACW 2 cut(s) 501, 1172
TauI GCSGC 1 cut(s) 783
TfiI GAWTC 6 cut(s) 43, 119, 548, 678, 757, 1046
Tru1I TTAA 5 cut(s) 263, 428, 452, 1113, 1232
Tru9I TTAA 5 cut(s) 263, 428, 452, 1113, 1232
TscAI CASTG 2 cut(s) 524, 656
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 5 cut(s) 118, 163, 680, 714, 1021
TspRI CASTG 2 cut(s) 524, 656
VneI GTGCAC 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 1070
VspI ATTAAT 1 cut(s) 1232
XapI RAATTY 3 cut(s) 265, 1008, 1163
XbaI TCTAGA 1 cut(s) 1000
XceI RCATGY 2 cut(s) 639, 1274
XcmI CCANNNNNNNNNTGG 1 cut(s) 1080
XhoI CTCGAG 1 cut(s) 558
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 3 cut(s) 369, 1001, 1059
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.