Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

29540079 .. 29542364

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTCACGGCTATGCTTCTTCTCCCTTGGCCTTGCTTGAACTCATTAAGAGCAAAATTGAGGAGTTTATCAAGTCTGTATTTGCTCTATTTCAAGCGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTTAAGGTTGATAGGATGCATCTTTATGTTAGGGGAGGAGGTCCCAACTACCAGAGGGGACTCGCAAAAATGAGGGCACTTGTAGAGGAAATTGGCCTCCCTATTAAGGTCTATGGTCCTGAAGCAACAATGACTGGTATTTGCAAGCAGGCAATCCAGTGCATCACTGCTGCTGCATGGCAATGTTATATGAAGATGGTTGCTTTCTTCTTGTCTATCTCACCTTTTCCTCTGTGGCGAGTTTCAATATCTCCATACCTTGTACCAATTTCTATTGTTAAGCTCTTTGTACCAATTTCATTCTATCAAAAACCTCAGCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

182

Amino Acids

20.43

Weight (kDa)

9.91

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	35 - 127	3.8e-35	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	486, 513
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	5 cut(s)	40, 94, 184, 205, 468
AluBI	AGCT	3 cut(s)	173, 223, 505
AluI	AGCT	3 cut(s)	173, 223, 505
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	29, 316
ApeKI	GCWGC	3 cut(s)	173, 392, 395
AspS9I	GGNCC	2 cut(s)	263, 338
AsuHPI	GGTGA	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	263, 338
BaeGI	GKGCMC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	160, 379, 382
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	3 cut(s)	174, 393, 396
BlsI	GCNGC	3 cut(s)	175, 394, 397
Bme18I	GGWCC	2 cut(s)	263, 338
BmgT120I	GGNCC	2 cut(s)	263, 338
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	3 cut(s)	228, 250, 393
Bpu10I	CCTNAGC	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	361, 379
Bse3DI	GCAATG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	361, 379
BseRI	GAGGAG	3 cut(s)	76, 159, 273
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	160, 379, 382
BshFI	GGCC	2 cut(s)	31, 318
BslFI	GGGAC	2 cut(s)	249, 294
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	249, 294
BsnI	GGCC	2 cut(s)	31, 318
Bsp1286I	GDGCHC	2 cut(s)	133, 301
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	31, 318
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	361, 379
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	99, 368, 372
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	160, 379, 382
BsuRI	GGCC	2 cut(s)	31, 318
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	162, 386, 387
Cac8I	GCNNGC	3 cut(s)	99, 368, 372
Cfr13I	GGNCC	2 cut(s)	263, 338
Csp6I	GTAC	2 cut(s)	485, 512
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	8 cut(s)	11, 31, 131, 173, 200, 223, 318, 505
CviKI_1	RGCY	8 cut(s)	11, 31, 131, 173, 200, 223, 318, 505
CviQI	GTAC	2 cut(s)	485, 512
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	263, 338
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	402
FaiI	YATR	7 cut(s)	14, 249, 336, 400, 411, 413, 478
FaqI	GGGAC	2 cut(s)	249, 294
FatI	CATG	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	174, 393, 396
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	174, 393, 396
GluI	GCNGC	3 cut(s)	174, 393, 396
HaeIII	GGCC	2 cut(s)	31, 318
Hin1II	CATG	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	113, 341
HpyAV	CCTTC	2 cut(s)	199, 205
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	6 cut(s)	101, 176, 241, 366, 384, 398
HpyF3I	CTNAG	1 cut(s)	537
Hsp92II	CATG	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	6 cut(s)	126, 287, 342, 354, 356, 392
Lsp1109I	GCAGC	3 cut(s)	160, 379, 382
LweI	GCATC	3 cut(s)	228, 250, 393
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	11, 421, 427
MhlI	GDGCHC	2 cut(s)	133, 301
MluCI	AATT	6 cut(s)	56, 138, 150, 312, 489, 516
MlyI	GAGTC	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	243
MseI	TTAA	4 cut(s)	47, 225, 327, 501
MslI	CAYNNNNRTG	3 cut(s)	11, 246, 403
MspCI	CTTAAG	1 cut(s)	224
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	175, 394, 397
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	263, 338
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	2 cut(s)	486, 513
RsaNI	GTAC	2 cut(s)	485, 512
RseI	CAYNNNNRTG	3 cut(s)	11, 246, 403
SaqAI	TTAA	4 cut(s)	47, 225, 327, 501
SatI	GCNGC	3 cut(s)	174, 393, 396
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	2 cut(s)	263, 338
SchI	GAGTC	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	133, 301
SetI	ASST	9 cut(s)	175, 225, 231, 265, 333, 448, 483, 507, 538
SfaNI	GCATC	3 cut(s)	228, 250, 393
SinI	GGWCC	2 cut(s)	263, 338
SmiMI	CAYNNNNRTG	3 cut(s)	11, 246, 403
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	6 cut(s)	56, 138, 150, 312, 489, 516
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	6 cut(s)	56, 138, 150, 312, 489, 516
Tru1I	TTAA	4 cut(s)	47, 225, 327, 501
Tru9I	TTAA	4 cut(s)	47, 225, 327, 501
TscAI	CASTG	3 cut(s)	169, 386, 394
TseI	GCWGC	3 cut(s)	173, 392, 395
TspDTI	ATGAA	2 cut(s)	428, 510
TspRI	CASTG	3 cut(s)	169, 386, 394
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	263, 338
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.