RchiOBHm_Chr2g0118841

Calreticulin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
31055390 .. 31062211
6822 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
ATGAGAGAGCTGCGAAAGATGAAGCTTCTCGAATCTCTTCTTCTTCTTCTTCTGGTGGTTCCGCTTCTATGCCTCCACTTCCGTCTCGCCGTCTCCGAAATCTTCTTCGAAGAGCGATTTGAAGATGGGTGGAAGAGCCGGTGGGTGTTGTCGGACTGGAAAAGGGCCGAAGGAAAAGCAGGAACGTTTAAGTACACTGCTGGGAAATGGTCTGGAGATCTTGATGATAAAGGCATTCAGACATATAATGATGCCAAGCATTATGCCATATCTGCAAAAATTCCTGAGTTCAGCAACAAAAACAGAACTCTAGTGGTCCAGTATTCGATTAAATTTGAGCAAGACATTGAATGTGGTGGTGGTTACATCAAGCTTCTATCTGGCTATGTGAATCAGAAAAAGTTCGGCGGTGATACCCCATACAGTTTCATGTTTGGACCAGATATATGTGGCTCACAGACCAAAAAACTCCATCTTATACTTTCTTACCAGGGGCAGAACTATCCCATAAAAAAGGATCTTCAATGTGAAACAGACAAGTTGACTCATTTCTATACATTTATTCTTAGACCTGATGCAACTTACAGTGTTCTTGTTGATAACCGAGAAAGAGATTCTGGAAGCATGTACACTGATTGGGATATCCTTCCTCCACGAAAAATCAAGGATGTCAATGCAAGAAAGCCATCAGACTGGGATGACAGAGAGTACATTGAAGACCTTAAAGCCGTCAAACCAGAGGGATATGATTCAGTTCCATCTGAAATTCCTGATCCAAAGGCCAAAGAGCCCGAGGACTGGGATGAGGAAGAGAACGGTTTATGGAGACCACCAAAGATCCCAAATCCAGCTTATAAGGGCCCATGGAAGCGCAAGAAAATCAAGAACCCCAACTACAAGGGGAAGTGGAAGACTCCGTGGATTGATAACCCAGAGTTTGAGGATGATCCTGACCTTTATGTGCTGAAGCCAATAAAATATGTGGGCATTGAAGTTTGGCAGGTAAAAGCTGGTTCAGTTTTCGACAACATTTTGATCTGTGATGATCCACAGTATGCAAAACAAGTGGTAGAAGAGATATTTTCCAATAGAGAGGCTGAAAAAGAAGCTTTTGAGGAAGCAGAGAAGGAGAGAAGAGCACGAGAAGCAGAGGATGCTAGAAGAGCAAGAGAGGAAGGTGAAAGAAAGAAGTGGGAGAGGGATCGTCAGTATGGAGATAGGAGGCGCCGTAGAAGGCATGATCCCCGGGATTATTTGGATGATTACCATGATGAACTATGA

Protein Analysis

426

Amino Acids

50.35

Weight (kDa)

6.05

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 36 - 272 2.6e-58 Calreticulin family
Calreticulin PF00262 273 - 346 1.1e-19 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
Acc36I ACCTGC 1 cut(s) 991
AccB1I GGYRCC 1 cut(s) 1224
AciI CCGC 2 cut(s) 62, 408
AclI AACGTT 1 cut(s) 185
AclWI GGATC 7 cut(s) 525, 767, 832, 941, 1040, 1209, 1235
AcsI RAATTY 3 cut(s) 279, 332, 765
AcuI CTGAAG 1 cut(s) 986
AcyI GRCGYC 1 cut(s) 1225
AfaI GTAC 3 cut(s) 194, 629, 710
AfiI CCNNNNNNNGG 1 cut(s) 798
AgsI TTSAA 5 cut(s) 122, 350, 524, 716, 992
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 6 cut(s) 10, 25, 373, 851, 1010, 1109
AluI AGCT 6 cut(s) 10, 25, 373, 851, 1010, 1109
Alw21I GWGCWC 1 cut(s) 1141
Alw26I GTCTC 3 cut(s) 89, 97, 820
AlwI GGATC 7 cut(s) 525, 767, 832, 941, 1040, 1209, 1235
Ama87I CYCGRG 2 cut(s) 791, 1245
AoxI GGCC 3 cut(s) 165, 780, 859
ApaI GGGCCC 1 cut(s) 863
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 3 cut(s) 279, 332, 765
Asp700I GAANNNNTTC 2 cut(s) 36, 401
AspLEI GCGC 2 cut(s) 873, 1227
AspS9I GGNCC 5 cut(s) 165, 316, 437, 859, 860
AsuC2I CCSGG 2 cut(s) 1246, 1247
AsuHPI GGTGA 2 cut(s) 422, 1190
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 2 cut(s) 791, 1245
AvaII GGWCC 2 cut(s) 316, 437
BaeGI GKGCMC 1 cut(s) 863
BanI GGYRCC 1 cut(s) 1224
BanII GRGCYC 2 cut(s) 792, 863
BauI CACGAG 1 cut(s) 1140
BbsI GAAGAC 2 cut(s) 723, 917
Bbv12I GWGCWC 1 cut(s) 1141
BccI CCATC 4 cut(s) 119, 480, 694, 766
BceAI ACGGC 3 cut(s) 74, 713, 1212
BciT130I CCWGG 1 cut(s) 491
BcnI CCSGG 2 cut(s) 1246, 1247
BcoDI GTCTC 3 cut(s) 89, 97, 820
BfaI CTAG 2 cut(s) 311, 1158
BfoI RGCGCY 1 cut(s) 1228
BfuAI ACCTGC 1 cut(s) 991
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 3 cut(s) 491, 1246, 1247
Bme18I GGWCC 2 cut(s) 316, 437
BmeT110I CYCGRG 2 cut(s) 791, 1245
BmgT120I GGNCC 5 cut(s) 165, 316, 437, 859, 860
BmiI GGNNCC 3 cut(s) 60, 861, 1226
BmrFI CCNGG 3 cut(s) 491, 1246, 1247
BmrI ACTGGG 2 cut(s) 703, 808
BmsI GCATC 3 cut(s) 241, 565, 1144
BmuI ACTGGG 2 cut(s) 703, 808
BpiI GAAGAC 2 cut(s) 723, 917
BpmI CTGGAG 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 1246, 1247
BsaHI GRCGYC 1 cut(s) 1225
BsaI GGTCTC 1 cut(s) 820
BsaJI CCNNGG 6 cut(s) 490, 792, 863, 917, 1244, 1245
BsaXI ACNNNNNCTCC 2 cut(s) 1213, 1243
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 4 cut(s) 161, 319, 698, 803
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 6 cut(s) 490, 792, 863, 917, 1244, 1245
BseGI GGATG 6 cut(s) 673, 703, 808, 949, 1159, 1264
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 4 cut(s) 161, 319, 698, 803
BseSI GKGCMC 1 cut(s) 863
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 3 cut(s) 167, 782, 861
BshNI GGYRCC 1 cut(s) 1224
BsiHKAI GWGCWC 1 cut(s) 1141
BsiHKCI CYCGRG 2 cut(s) 791, 1245
BsiSI CCGG 2 cut(s) 139, 1246
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 3 cut(s) 89, 97, 820
BsmBI CGTCTC 2 cut(s) 89, 97
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 3 cut(s) 167, 782, 861
Bso31I GGTCTC 1 cut(s) 820
BsoBI CYCGRG 2 cut(s) 791, 1245
Bsp119I TTCGAA 1 cut(s) 108
Bsp120I GGGCCC 1 cut(s) 859
Bsp1286I GDGCHC 3 cut(s) 792, 863, 1141
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
Bsp19I CCATGG 1 cut(s) 863
BspACI CCGC 2 cut(s) 62, 408
BspANI GGCC 3 cut(s) 167, 782, 861
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 60, 861, 1226
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 7 cut(s) 525, 767, 832, 941, 1040, 1209, 1235
BspQI GCTCTTC 4 cut(s) 105, 128, 1129, 1156
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 1224
BspTNI GGTCTC 1 cut(s) 820
BsrFI RCCGGY 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 4 cut(s) 161, 319, 698, 803
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 6 cut(s) 490, 792, 863, 917, 1244, 1245
BssMI GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
BssNI GRCGYC 1 cut(s) 1225
BssSI CACGAG 1 cut(s) 1140
BssT1I CCWWGG 1 cut(s) 863
Bst2BI CACGAG 1 cut(s) 1140
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 4 cut(s) 425, 587, 818, 1053
Bst6I CTCTTC 7 cut(s) 42, 105, 128, 804, 1068, 1129, 1156
BstACI GRCGYC 1 cut(s) 1225
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 285, 566
BstDSI CCRYGG 2 cut(s) 863, 917
BstF5I GGATG 6 cut(s) 673, 703, 808, 949, 1159, 1264
BstH2I RGCGCY 1 cut(s) 1228
BstHHI GCGC 2 cut(s) 873, 1227
BstKTI GATC 9 cut(s) 220, 520, 775, 840, 949, 1038, 1048, 1204, 1243
BstMAI GTCTC 3 cut(s) 89, 97, 820
BstMBI GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
BstMWI GCNNNNNNNGC 4 cut(s) 272, 1145, 1154, 1163
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 3 cut(s) 489, 1244, 1245
BstSLI GKGCMC 1 cut(s) 863
BstV2I GAAGAC 2 cut(s) 723, 917
BstX2I RGATCY 3 cut(s) 217, 517, 837
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 3 cut(s) 217, 517, 837
BsuRI GGCC 3 cut(s) 167, 782, 861
BtgI CCRYGG 2 cut(s) 863, 917
BtsCI GGATG 6 cut(s) 673, 703, 808, 949, 1159, 1264
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 195, 592, 630
BveI ACCTGC 1 cut(s) 991
CfoI GCGC 2 cut(s) 873, 1227
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 5 cut(s) 165, 316, 437, 859, 860
Cfr9I CCCGGG 1 cut(s) 1245
Csp6I GTAC 3 cut(s) 193, 628, 709
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 5 cut(s) 430, 625, 864, 1238, 1268
CviQI GTAC 3 cut(s) 193, 628, 709
DdeI CTNAG 2 cut(s) 285, 566
DinI GGCGCC 1 cut(s) 1226
DpnI GATC 9 cut(s) 219, 519, 774, 839, 948, 1037, 1047, 1203, 1242
DpnII GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
Eam1104I CTCTTC 7 cut(s) 42, 105, 128, 804, 1068, 1129, 1156
EarI CTCTTC 7 cut(s) 42, 105, 128, 804, 1068, 1129, 1156
Eco130I CCWWGG 1 cut(s) 863
Eco24I GRGCYC 2 cut(s) 792, 863
Eco31I GGTCTC 1 cut(s) 820
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 316, 437
Eco57I CTGAAG 1 cut(s) 986
Eco88I CYCGRG 2 cut(s) 791, 1245
EcoO109I RGGNCCY 1 cut(s) 859
EcoRII CCWGG 1 cut(s) 489
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 863
EcoT38I GRGCYC 2 cut(s) 792, 863
EgeI GGCGCC 1 cut(s) 1226
EheI GGCGCC 1 cut(s) 1226
ErhI CCWWGG 1 cut(s) 863
Esp3I CGTCTC 2 cut(s) 89, 97
FaeI CATG 5 cut(s) 433, 628, 867, 1241, 1271
FatI CATG 5 cut(s) 429, 624, 863, 1237, 1267
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 6 cut(s) 680, 710, 815, 956, 1166, 1271
FriOI GRGCYC 2 cut(s) 792, 863
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 2 cut(s) 311, 1158
GlaI GCGC 2 cut(s) 872, 1226
GluI GCNGC 1 cut(s) 11
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 1228
HaeIII GGCC 3 cut(s) 167, 782, 861
HapII CCGG 2 cut(s) 139, 1246
HhaI GCGC 2 cut(s) 873, 1227
Hin1I GRCGYC 1 cut(s) 1225
Hin1II CATG 5 cut(s) 433, 628, 867, 1241, 1271
Hin6I GCGC 2 cut(s) 871, 1225
HinP1I GCGC 2 cut(s) 871, 1225
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HindIII AAGCTT 3 cut(s) 23, 371, 1107
HinfI GANTC 6 cut(s) 32, 391, 544, 614, 749, 913
HpaII CCGG 2 cut(s) 139, 1246
HphI GGTGA 2 cut(s) 422, 1190
Hpy166II GTNNAC 3 cut(s) 195, 543, 630
Hpy188I TCNGA 6 cut(s) 97, 154, 240, 396, 691, 763
Hpy188III TCNNGA 8 cut(s) 29, 213, 221, 284, 618, 770, 883, 950
Hpy8I GTNNAC 3 cut(s) 195, 543, 630
HpyAV CCTTC 5 cut(s) 164, 656, 1120, 1169, 1227
HpyCH4III ACNGT 4 cut(s) 425, 587, 818, 1053
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 275, 578, 677, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 1145, 1154, 1163
HpyF3I CTNAG 2 cut(s) 285, 566
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 1225
Hsp92II CATG 5 cut(s) 433, 628, 867, 1241, 1271
HspAI GCGC 2 cut(s) 871, 1225
KasI GGCGCC 1 cut(s) 1224
Kzo9I GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
LguI GCTCTTC 4 cut(s) 105, 128, 1129, 1156
LweI GCATC 3 cut(s) 241, 565, 1144
MaeI CTAG 2 cut(s) 311, 1158
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 362
MalI GATC 9 cut(s) 219, 519, 774, 839, 948, 1037, 1047, 1203, 1242
MboI GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
MflI RGATCY 3 cut(s) 217, 517, 837
MhlI GDGCHC 3 cut(s) 792, 863, 1141
MluCI AATT 3 cut(s) 279, 332, 765
Mly113I GGCGCC 1 cut(s) 1225
MlyI GAGTC 2 cut(s) 538, 907
MmeI TCCRAC 1 cut(s) 132
MroXI GAANNNNTTC 2 cut(s) 36, 401
MseI TTAA 3 cut(s) 189, 330, 723
MspI CCGG 2 cut(s) 139, 1246
MspR9I CCNGG 3 cut(s) 491, 1246, 1247
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 272, 1145, 1154, 1163
NarI GGCGCC 1 cut(s) 1225
NciI CCSGG 2 cut(s) 1246, 1247
NcoI CCATGG 1 cut(s) 863
NdeII GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
NlaIII CATG 5 cut(s) 433, 628, 867, 1241, 1271
NlaIV GGNNCC 3 cut(s) 60, 861, 1226
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 1 cut(s) 108
PciSI GCTCTTC 4 cut(s) 105, 128, 1129, 1156
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 36, 401
PfeI GAWTC 4 cut(s) 32, 391, 614, 749
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 2 cut(s) 538, 907
PluTI GGCGCC 1 cut(s) 1228
PpsI GAGTC 2 cut(s) 538, 907
PsiI TTATAA 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 3 cut(s) 60, 861, 1226
PspOMI GGGCCC 1 cut(s) 859
PspPI GGNCC 5 cut(s) 165, 316, 437, 859, 860
PsrI GAACNNNNNNTAC 2 cut(s) 878, 910
PsuI RGATCY 3 cut(s) 217, 517, 837
RsaI GTAC 3 cut(s) 194, 629, 710
RsaNI GTAC 3 cut(s) 193, 628, 709
SapI GCTCTTC 4 cut(s) 105, 128, 1129, 1156
SaqAI TTAA 3 cut(s) 189, 330, 723
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 9 cut(s) 217, 517, 772, 837, 946, 1035, 1045, 1201, 1240
Sau96I GGNCC 5 cut(s) 165, 316, 437, 859, 860
SchI GAGTC 2 cut(s) 538, 907
ScrFI CCNGG 3 cut(s) 491, 1246, 1247
SduI GDGCHC 3 cut(s) 792, 863, 1141
SfaNI GCATC 3 cut(s) 241, 565, 1144
SfoI GGCGCC 1 cut(s) 1226
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 2 cut(s) 316, 437
SmaI CCCGGG 1 cut(s) 1247
Sse9I AATT 3 cut(s) 279, 332, 765
SsiI CCGC 2 cut(s) 62, 408
SspDI GGCGCC 1 cut(s) 1224
SspMI CTAG 2 cut(s) 311, 1158
StyD4I CCNGG 3 cut(s) 489, 1244, 1245
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 4 cut(s) 425, 587, 818, 1053
TaiI ACGT 1 cut(s) 188
TaqI TCGA 4 cut(s) 30, 108, 326, 1023
TasI AATT 3 cut(s) 279, 332, 765
TatI WGTACW 3 cut(s) 192, 627, 708
TfiI GAWTC 4 cut(s) 32, 391, 614, 749
Tru1I TTAA 3 cut(s) 189, 330, 723
Tru9I TTAA 3 cut(s) 189, 330, 723
TscAI CASTG 3 cut(s) 202, 592, 637
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 35, 418
TspGWI ACGGA 2 cut(s) 71, 906
TspMI CCCGGG 1 cut(s) 1245
TspRI CASTG 3 cut(s) 202, 592, 637
VpaK11BI GGWCC 2 cut(s) 316, 437
XapI RAATTY 3 cut(s) 279, 332, 765
XceI RCATGY 1 cut(s) 628
XmaI CCCGGG 1 cut(s) 1245
XmnI GAANNNNTTC 2 cut(s) 36, 401
XspI CTAG 2 cut(s) 311, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.