Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

56905418 .. 56906315

Gene Structure 898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCAGACCCAGACCATTCACAACCACGCCCACCCCCACCGTCGTCCGCGTTCCCGTACGGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACCCGGACCCATCCCACCTCCCCGCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCCGACCTCGTCGCCGCCCTCAAAGAGCTTCTACGGCAGGATCAGTGCCACCTGGCCCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCAACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCGCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGCGGAGGAGTCCAGTGGGACAGTGATAAGGGGCTGATAAGGTTGATCAAGGCCGTCATTGGGGCCGACCGGAGGGAATCGACGGTCAGGATTTACGAGGTGCTGAAGAGGAAAGGATGGGGGTCTAGTAGTTTTAAAGCGGATGAGTATATGGTTAGGGTGTTGAGCAAGGGATTGAGGAGGCTTGGTGAGGCTGAACTAGCTGATGAGGTTGATGTCAAATTTGGTCCACAGCTGTTATTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.3

Weight (kDa)

9.4

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	2 cut(s)	96, 120
AciI	CCGC	8 cut(s)	94, 111, 237, 262, 288, 345, 465, 602
AclWI	GGATC	3 cut(s)	198, 321, 348
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	48, 105
AfiI	CCNNNNNNNGG	7 cut(s)	192, 193, 217, 241, 414, 522, 534
AgsI	TTSAA	1 cut(s)	707
AhdI	GACNNNNNGTC	1 cut(s)	137
AjnI	CCWGG	3 cut(s)	240, 324, 333
AluBI	AGCT	4 cut(s)	301, 451, 665, 697
AluI	AGCT	4 cut(s)	301, 451, 665, 697
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	198, 321, 348
AoxI	GGCC	8 cut(s)	112, 145, 165, 195, 327, 336, 513, 525
ApaI	GGGCCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	683
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	403
AsuC2I	CCSGG	3 cut(s)	149, 212, 218
AsuHPI	GGTGA	2 cut(s)	8, 662
AvaII	GGWCC	5 cut(s)	131, 151, 214, 220, 689
BaeGI	GKGCMC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	199, 453
Bbv12I	GWGCWC	1 cut(s)	453
BbvCI	CCTCAGC	1 cut(s)	155
BccI	CCATC	4 cut(s)	176, 232, 412, 573
BceAI	ACGGC	3 cut(s)	161, 323, 500
BciT130I	CCWGG	3 cut(s)	242, 326, 335
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	3 cut(s)	149, 212, 218
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	588, 662
BfoI	RGCGCY	1 cut(s)	404
BglI	GCCNNNNNGGC	2 cut(s)	335, 392
BisI	GCNGC	2 cut(s)	112, 288
BlsI	GCNGC	2 cut(s)	113, 289
Bme1390I	CCNGG	6 cut(s)	149, 212, 218, 242, 326, 335
Bme18I	GGWCC	5 cut(s)	131, 151, 214, 220, 689
BmeRI	GACNNNNNGTC	1 cut(s)	137
BmiI	GGNNCC	6 cut(s)	133, 152, 197, 216, 222, 526
BmrFI	CCNGG	6 cut(s)	149, 212, 218, 242, 326, 335
BmsI	GCATC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	3 cut(s)	149, 212, 218
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	135, 240, 387
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	7 cut(s)	192, 193, 217, 241, 414, 522, 534
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	3 cut(s)	242, 326, 335
BseDI	CCNNGG	3 cut(s)	135, 240, 387
BseGI	GGATG	5 cut(s)	168, 224, 423, 584, 610
BseLI	CCNNNNNNNGG	7 cut(s)	192, 193, 217, 241, 414, 522, 534
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	3 cut(s)	440, 483, 655
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	2 cut(s)	96, 120
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	8 cut(s)	114, 147, 167, 197, 329, 338, 515, 527
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	148, 212, 218, 532
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	7 cut(s)	192, 193, 217, 241, 414, 522, 534
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	8 cut(s)	114, 147, 167, 197, 329, 338, 515, 527
Bso31I	GGTCTC	1 cut(s)	250
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	199, 453
Bsp143I	GATC	4 cut(s)	203, 313, 353, 507
BspACI	CCGC	8 cut(s)	94, 111, 237, 262, 288, 345, 465, 602
BspANI	GGCC	8 cut(s)	114, 147, 167, 197, 329, 338, 515, 527
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	96, 120
BspLI	GGNNCC	6 cut(s)	133, 152, 197, 216, 222, 526
BspPI	GGATC	3 cut(s)	198, 321, 348
BspTNI	GGTCTC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	135, 240, 387
BssMI	GATC	4 cut(s)	203, 313, 353, 507
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	242, 326, 335
Bst4CI	ACNGT	4 cut(s)	88, 108, 485, 547
Bst6I	CTCTTC	2 cut(s)	18, 563
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	168, 224, 423, 584, 610
BstFNI	CGCG	2 cut(s)	96, 120
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	4 cut(s)	206, 316, 356, 510
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	4 cut(s)	203, 313, 353, 507
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 173, 182, 307, 335, 344, 392, 662
BstNI	CCWGG	3 cut(s)	242, 326, 335
BstSCI	CCNGG	6 cut(s)	147, 210, 216, 240, 324, 333
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	96, 120
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	8 cut(s)	114, 147, 167, 197, 329, 338, 515, 527
BtsCI	GGATG	5 cut(s)	168, 224, 423, 584, 610
BtsIMutI	CAGTG	3 cut(s)	323, 482, 490
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	47, 104
CviQI	GTAC	2 cut(s)	47, 104
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	205, 315, 355, 509
DpnII	GATC	4 cut(s)	203, 313, 353, 507
DraI	TTTAAA	1 cut(s)	598
DrdI	GACNNNNNNGTC	1 cut(s)	377
DriI	GACNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	18, 563
Eam1105I	GACNNNNNGTC	1 cut(s)	137
EarI	CTCTTC	2 cut(s)	18, 563
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	199, 453
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	5 cut(s)	131, 151, 214, 220, 689
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	240, 324, 333
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	199, 453
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	2 cut(s)	612, 614
FaqI	GGGAC	1 cut(s)	494
FauI	CCCGC	2 cut(s)	244, 269
FbaI	TGATCA	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	112, 288
FokI	GGATG	5 cut(s)	155, 211, 430, 591, 617
FriOI	GRGCYC	2 cut(s)	199, 453
Fsp4HI	GCNGC	2 cut(s)	112, 288
FspBI	CTAG	2 cut(s)	588, 662
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	2 cut(s)	112, 288
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	8 cut(s)	114, 147, 167, 197, 329, 338, 515, 527
HapII	CCGG	4 cut(s)	148, 212, 218, 532
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	2 cut(s)	471, 539
HpaII	CCGG	4 cut(s)	148, 212, 218, 532
HphI	GGTGA	2 cut(s)	8, 662
Hpy166II	GTNNAC	3 cut(s)	131, 382, 692
Hpy188I	TCNGA	4 cut(s)	208, 277, 353, 358
Hpy188III	TCNNGA	2 cut(s)	550, 711
Hpy8I	GTNNAC	3 cut(s)	131, 382, 692
Hpy99I	CGWCG	3 cut(s)	92, 287, 547
HpyAV	CCTTC	3 cut(s)	43, 349, 358
HpyCH4III	ACNGT	4 cut(s)	88, 108, 485, 547
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 173, 182, 307, 335, 344, 392, 662
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	401
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	203, 313, 353, 507
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	588, 662
MalI	GATC	4 cut(s)	205, 315, 355, 509
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	4 cut(s)	203, 313, 353, 507
MboII	GAAGA	2 cut(s)	5, 580
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	199, 453
MluCI	AATT	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	2 cut(s)	231, 300
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	4 cut(s)	148, 212, 218, 532
MspR9I	CCNGG	6 cut(s)	149, 212, 218, 242, 326, 335
MvaI	CCWGG	3 cut(s)	242, 326, 335
MvnI	CGCG	2 cut(s)	96, 120
MwoI	GCNNNNNNNGC	8 cut(s)	117, 173, 182, 307, 335, 344, 392, 662
NciI	CCSGG	3 cut(s)	149, 212, 218
NdeII	GATC	4 cut(s)	203, 313, 353, 507
NlaIV	GGNNCC	6 cut(s)	133, 152, 197, 216, 222, 526
NmeAIII	GCCGAG	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	539
Pfl23II	CGTACG	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	113, 289
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	240, 324, 333
PspGI	CCWGG	3 cut(s)	240, 324, 333
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	6 cut(s)	133, 152, 197, 216, 222, 526
PspOMI	GGGCCC	1 cut(s)	195
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	697
RsaI	GTAC	2 cut(s)	48, 105
RsaNI	GTAC	2 cut(s)	47, 104
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	2 cut(s)	112, 288
Sau3AI	GATC	4 cut(s)	203, 313, 353, 507
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	6 cut(s)	149, 212, 218, 242, 326, 335
SduI	GDGCHC	2 cut(s)	199, 453
SfaNI	GCATC	1 cut(s)	168
SfiI	GGCCNNNNNGGCC	1 cut(s)	335
SinI	GGWCC	5 cut(s)	131, 151, 214, 220, 689
Sse9I	AATT	1 cut(s)	683
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	8 cut(s)	94, 111, 237, 262, 288, 345, 465, 602
SspMI	CTAG	2 cut(s)	588, 662
SstI	GAGCTC	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	6 cut(s)	147, 210, 216, 240, 324, 333
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	88, 108, 485, 547
TaqI	TCGA	3 cut(s)	162, 453, 542
TasI	AATT	1 cut(s)	683
TauI	GCSGC	2 cut(s)	114, 290
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	323, 482, 490
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	3 cut(s)	323, 482, 490
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	5 cut(s)	131, 151, 214, 220, 689
XapI	RAATTY	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	588, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.