RchiOBHm_Chr2g0172501
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004738
Physical Location & Seq
Forward (+)
85812376 .. 85814588
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGGACTACAGAGAGGGGAGTTTTTCTTTTCTTTCCACCCTCCTCTCCGGGATGAAGCCGGAGCCTCATCCGGAGAATGTCGACCTCAACACCCGTTTATTCAAACCTCCCTCACCTAATGGTGACTATAAGCCAAACACTCTCTTTGAAAACCTCTCTCACTTTGAGAACCAAGACAGCAGGGGGATTGATCTGAATTATTCAGATCAATACCATCAGAGTTCTCCTCTCCTCGGTGGTAACCATTTCGGTGGTACCACTGTTGAGGGCTCTTCATCAAAACCCTTTTGTGGGGTTGATCTCGCTACCATCAAAGGGTTCAATCAACCTTTTGATGCATGTTACAATCAGGCTGATAATCCCAACCTGCAATCAAACAATGTCAATATTTTCCCTTATGCCCCCACGGCAGCTGTTTCGTTTGCAGACAGCCAGAAGGCTGTCATGCATGGCGGGTGGGGGGACTACGATGACGCTCCTCGTCATCGTTATCAAGACCAACACCATCACCAGATGCCAGACCACCACCACCACCACCAGATGGCAGCTACGCAGCCGTTGCCGGAGGCTACACAAGCTACAAGCTGTGTCCAGCTTCCGCCCCTCGTCAATTTCCAAGAATTCAAATCAGCTACGCCTAGGTTTATGCTGCCATCAGCTGATGAGTACTACTCCCGTAACATAACCCCGAAGGAAAATGAACTTGGCAAGAAGAAGAGGCATTACACTAAAAAAGCCAGTAAAGATGGGCGCGAAGCAATGATCATCAAGGGGCAATGGACGCCCCAGGAAGACAGACTACTGATAGAGCTAGTGGGGAGATATGGTGATAAAAAGTGGTCTCAAATTTCTAAGGTGCTGAAAGGTCGAGTAGGAAAACAGTGTAGAGAAAGATGGCACAACCATCTCCGGCCTGACATTAGGGTTTTAAAGAAATGTGGAGCGAAGAAGAGGATAAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

321

Amino Acids

36.57

Weight (kDa)

9.02

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 257 - 303 8.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 260 - 308 3.5e-16 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 541
AccI GTMKAC 1 cut(s) 81
AccII CGCG 1 cut(s) 753
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 2 cut(s) 453, 599
AclWI GGATC 1 cut(s) 954
AcsI RAATTY 2 cut(s) 620, 846
AcyI GRCGYC 1 cut(s) 782
AfaI GTAC 2 cut(s) 256, 668
AfiI CCNNNNNNNGG 5 cut(s) 233, 290, 291, 315, 541
AgsI TTSAA 4 cut(s) 103, 149, 322, 625
AjnI CCWGG 1 cut(s) 786
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AluBI AGCT 8 cut(s) 413, 548, 578, 585, 595, 632, 659, 811
AluI AGCT 8 cut(s) 413, 548, 578, 585, 595, 632, 659, 811
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 1 cut(s) 954
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 4 cut(s) 410, 545, 553, 649
ApoI RAATTY 2 cut(s) 620, 846
Asp718I GGTACC 1 cut(s) 254
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 1 cut(s) 753
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 4 cut(s) 105, 134, 500, 839
AvrII CCTAGG 1 cut(s) 638
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 4 cut(s) 707, 739, 783, 815
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 4 cut(s) 422, 557, 565, 636
BccI CCATC 8 cut(s) 222, 317, 513, 535, 661, 740, 888, 912
BceAI ACGGC 2 cut(s) 423, 541
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 1 cut(s) 788
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 846
BfaI CTAG 2 cut(s) 639, 812
BfmI CTRYAG 1 cut(s) 7
BfuAI ACCTGC 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 4 cut(s) 411, 546, 554, 650
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 4 cut(s) 412, 547, 555, 651
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 49, 788
BmiI GGNNCC 2 cut(s) 63, 256
BmrFI CCNGG 2 cut(s) 49, 788
BmsI GCATC 2 cut(s) 325, 504
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 4 cut(s) 211, 243, 656, 688
BpuMI CCSGG 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 782
BsaI GGTCTC 1 cut(s) 846
BsaJI CCNNGG 4 cut(s) 232, 405, 638, 786
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 290, 291, 315, 541
Bse1I ACTGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 765, 782
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 4 cut(s) 232, 405, 638, 786
BseGI GGATG 2 cut(s) 57, 67
BseLI CCNNNNNNNGG 5 cut(s) 233, 290, 291, 315, 541
BseMI GCAATG 2 cut(s) 765, 782
BseNI ACTGG 1 cut(s) 738
BseRI GAGGAG 4 cut(s) 32, 216, 221, 468
BseXI GCAGC 4 cut(s) 422, 557, 565, 636
Bsh1236I CGCG 1 cut(s) 753
BshFI GGCC 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 254
BsiSI CCGG 5 cut(s) 48, 59, 71, 563, 910
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 5 cut(s) 233, 290, 291, 315, 541
BsmAI GTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 1 cut(s) 913
Bso31I GGTCTC 1 cut(s) 846
Bsp1286I GDGCHC 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 5 cut(s) 190, 205, 298, 762, 959
BspACI CCGC 2 cut(s) 453, 599
BspANI GGCC 1 cut(s) 913
BspEI TCCGGA 1 cut(s) 70
BspFNI CGCG 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 63, 256
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 954
BspQI GCTCTTC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 846
BsrDI GCAATG 2 cut(s) 765, 782
BsrI ACTGG 1 cut(s) 738
BssECI CCNNGG 4 cut(s) 232, 405, 638, 786
BssMI GATC 5 cut(s) 190, 205, 298, 762, 959
BssNI GRCGYC 1 cut(s) 782
BssT1I CCWWGG 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 2 cut(s) 262, 882
Bst6I CTCTTC 3 cut(s) 277, 710, 944
BstACI GRCGYC 1 cut(s) 782
BstAPI GCANNNNNTGC 1 cut(s) 559
BstDEI CTNAG 1 cut(s) 852
BstDSI CCRYGG 1 cut(s) 405
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 2 cut(s) 57, 67
BstFNI CGCG 1 cut(s) 753
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 5 cut(s) 193, 208, 301, 765, 962
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 5 cut(s) 190, 205, 298, 762, 959
BstMWI GCNNNNNNNGC 4 cut(s) 407, 559, 575, 781
BstNI CCWGG 1 cut(s) 788
BstNSI RCATGY 1 cut(s) 342
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 47, 786
BstSFI CTRYAG 1 cut(s) 7
BstUI CGCG 1 cut(s) 753
BstV1I GCAGC 4 cut(s) 422, 557, 565, 636
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 959
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 959
BsuRI GGCC 1 cut(s) 913
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 2 cut(s) 57, 67
BtsIMutI CAGTG 2 cut(s) 258, 887
BveI ACCTGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 753
CseI GACGC 2 cut(s) 482, 790
Csp6I GTAC 2 cut(s) 255, 667
CviAII CATG 3 cut(s) 339, 445, 449
CviQI GTAC 2 cut(s) 255, 667
DdeI CTNAG 1 cut(s) 852
DpnI GATC 5 cut(s) 192, 207, 300, 764, 961
DpnII GATC 5 cut(s) 190, 205, 298, 762, 959
DraI TTTAAA 1 cut(s) 930
Eam1104I CTCTTC 3 cut(s) 277, 710, 944
EarI CTCTTC 3 cut(s) 277, 710, 944
EciI GGCGGA 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 638
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 846
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 786
EcoT14I CCWWGG 1 cut(s) 638
EcoT22I ATGCAT 2 cut(s) 340, 450
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 3 cut(s) 342, 448, 452
FaiI YATR 8 cut(s) 129, 340, 399, 446, 450, 647, 683, 825
FaqI GGGAC 1 cut(s) 476
FatI CATG 3 cut(s) 338, 444, 448
FauI CCCGC 1 cut(s) 446
FbaI TGATCA 1 cut(s) 762
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 4 cut(s) 411, 546, 554, 650
FokI GGATG 2 cut(s) 54, 64
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 4 cut(s) 411, 546, 554, 650
FspBI CTAG 2 cut(s) 639, 812
GlaI GCGC 1 cut(s) 752
GluI GCNGC 4 cut(s) 411, 546, 554, 650
HaeIII GGCC 1 cut(s) 913
HapII CCGG 5 cut(s) 48, 59, 71, 563, 910
HgaI GACGC 2 cut(s) 482, 790
HhaI GCGC 1 cut(s) 753
Hin1I GRCGYC 1 cut(s) 782
Hin1II CATG 3 cut(s) 342, 448, 452
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HpaII CCGG 5 cut(s) 48, 59, 71, 563, 910
HphI GGTGA 4 cut(s) 105, 134, 500, 839
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 195, 205, 219
Hpy188III TCNNGA 3 cut(s) 71, 494, 963
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 430, 685
HpyCH4III ACNGT 2 cut(s) 262, 882
HpyCH4V TGCA 4 cut(s) 338, 370, 425, 448
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 559, 575, 781
HpyF3I CTNAG 1 cut(s) 852
Hsp92I GRCGYC 1 cut(s) 782
Hsp92II CATG 3 cut(s) 342, 448, 452
HspAI GCGC 1 cut(s) 751
Kpn2I TCCGGA 1 cut(s) 70
KpnI GGTACC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 5 cut(s) 190, 205, 298, 762, 959
LguI GCTCTTC 1 cut(s) 277
LmnI GCTCC 3 cut(s) 61, 481, 941
Lsp1109I GCAGC 4 cut(s) 422, 557, 565, 636
LweI GCATC 2 cut(s) 325, 504
MaeI CTAG 2 cut(s) 639, 812
MaeIII GTNAC 4 cut(s) 122, 239, 341, 677
MalI GATC 5 cut(s) 192, 207, 300, 764, 961
MboI GATC 5 cut(s) 190, 205, 298, 762, 959
MboII GAAGA 6 cut(s) 264, 724, 727, 803, 958, 961
MflI RGATCY 1 cut(s) 959
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 4 cut(s) 196, 610, 620, 846
Mph1103I ATGCAT 2 cut(s) 340, 450
MroI TCCGGA 1 cut(s) 70
MseI TTAA 1 cut(s) 929
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 2 cut(s) 413, 659
MspI CCGG 5 cut(s) 48, 59, 71, 563, 910
MspR9I CCNGG 2 cut(s) 49, 788
MvaI CCWGG 1 cut(s) 788
MvnI CGCG 1 cut(s) 753
MwoI GCNNNNNNNGC 4 cut(s) 407, 559, 575, 781
NciI CCSGG 1 cut(s) 49
NdeII GATC 5 cut(s) 190, 205, 298, 762, 959
NlaIII CATG 3 cut(s) 342, 448, 452
NlaIV GGNNCC 2 cut(s) 63, 256
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 2 cut(s) 340, 450
NspI RCATGY 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 47
PkrI GCNGC 4 cut(s) 412, 547, 555, 651
Psp6I CCWGG 1 cut(s) 786
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 2 cut(s) 63, 256
PsuI RGATCY 1 cut(s) 959
PvuII CAGCTG 2 cut(s) 413, 659
RsaI GTAC 2 cut(s) 256, 668
RsaNI GTAC 2 cut(s) 255, 667
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 277
SaqAI TTAA 1 cut(s) 929
SatI GCNGC 4 cut(s) 411, 546, 554, 650
Sau3AI GATC 5 cut(s) 190, 205, 298, 762, 959
ScaI AGTACT 1 cut(s) 668
ScrFI CCNGG 2 cut(s) 49, 788
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 2 cut(s) 325, 504
SfcI CTRYAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 4 cut(s) 196, 610, 620, 846
SsiI CCGC 2 cut(s) 453, 599
SspI AATATT 1 cut(s) 388
SspMI CTAG 2 cut(s) 639, 812
StyD4I CCNGG 2 cut(s) 47, 786
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 2 cut(s) 262, 882
TaqI TCGA 2 cut(s) 81, 868
TasI AATT 4 cut(s) 196, 610, 620, 846
TatI WGTACW 1 cut(s) 666
Tru1I TTAA 1 cut(s) 929
Tru9I TTAA 1 cut(s) 929
TscAI CASTG 2 cut(s) 265, 887
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 4 cut(s) 410, 545, 553, 649
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 68, 264, 714
TspRI CASTG 2 cut(s) 265, 887
Van91I CCANNNNNTGG 1 cut(s) 541
XapI RAATTY 2 cut(s) 620, 846
XceI RCATGY 1 cut(s) 342
XmaJI CCTAGG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 2 cut(s) 639, 812
ZrmI AGTACT 1 cut(s) 668
Zsp2I ATGCAT 2 cut(s) 340, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.