Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

741743 .. 743677

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCACTCTGCTGGAAAACATGAAGGTTTTTCAAGGCCCGCAAACAAGTCGCCTGAAATGCCTCGTAGAAGCCCACCCCCACCACCTTCAGTGGGAGAATCAGCTAGAAATCCATCACAAACGTCAAATATGTCCAAGGCAGGGGGAGGTGGAGGGCCACTTGGTGCATTTTGGTCCACTCAGCATGCTGAGGATTCAGTTGTTGTTGAAGAAAAGACTGTACCTAAGTTTGATGATTCTAATCATCCTTTACCCAAGAACAGTGCCCCTGCAAAAGTGGACAATACACCAACCTATGCTGCACGAAGAAACTCACACGTGAAATCGCACAAGCATGAAGATGGATTTCCAAAGGACATTGAAATAAATTTCTTCCAGAAGCATACTGACCATGGTGCTGAGAGGCCAAAGGCATCCAAGCCTGAGAGTGCAACTAGTTTTCACGATGATGCATTTAACTCATTTGTTGCTGAATTTGATACTAATAAACTCAGCGTGGGAGCTAGTAATAGCAAATCAGGAAAAGAAGAAGCATTAGAGACTGAAGTAGAGAGATTGAAGGAGCAGCTGAACCAAGCCAACATAGAAAAGGCTGAAATAACTTCCAAATTTGAAAAGCTATCAGCCATCTGCCGATCTCAAAGGCAAGAGTTGCAGGAGCTTAAGCAGACGCTTGCCGCTAGAACACCTTCACCGAATAAAGATGCTTTGAGAAATCAAATGTCACCTGGCGTTCAATCATCCGCAACCCCACCGCAGAGGGAGAAGATAGAAGGAGCCATTTGGGAACTCCAGCAGGATAAATCTGACCGGAAAACTCCAAGTCCAGAGACAAAGTCATGGCAGCCGTTTGCAGAACCGCAGCCTTCTTCAACGGACAACACTGTCAAATCTGTCAGGACAAGAAATGGTCACCAGAACAAGCAAGCTACGACTCAAGTAAATACTGGTTTTGACTCGTGGGGTTTTGGAACAGAGAGCTTTTCTGCTGCGCCCACTGGAAGCACCCAAATATCAAGACCTATGGGTGAAGGAAATATTTCTCAGCGTTTTGGTGACACAAAGGCTATGGAGAGCAAGCCAGCTTCTCAACCTGCTGGATGGGCTGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

371

Amino Acids

40.49

Weight (kDa)

8.45

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	884
Acc36I	ACCTGC	1 cut(s)	1102
AciI	CCGC	5 cut(s)	39, 678, 744, 755, 860
AcsI	RAATTY	3 cut(s)	367, 473, 608
AcuI	CTGAAG	2 cut(s)	72, 564
AcvI	CACGTG	1 cut(s)	319
AdeI	CACNNNGTG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	92, 141
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	7 cut(s)	33, 209, 362, 559, 614, 737, 873
AhlI	ACTAGT	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	8 cut(s)	104, 503, 568, 619, 661, 929, 981, 1085
AluI	AGCT	8 cut(s)	104, 503, 568, 619, 661, 929, 981, 1085
Alw26I	GTCTC	2 cut(s)	533, 824
AoxI	GGCC	3 cut(s)	35, 155, 404
ApeKI	GCWGC	5 cut(s)	299, 565, 844, 862, 989
ApoI	RAATTY	3 cut(s)	367, 473, 608
Asp700I	GAANNNNTTC	2 cut(s)	688, 1039
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	3 cut(s)	36, 155, 174
AsuHPI	GGTGA	5 cut(s)	684, 717, 905, 1040, 1067
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	958
BbrPI	CACGTG	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	5 cut(s)	286, 577, 856, 874, 976
BccI	CCATC	4 cut(s)	121, 335, 635, 1095
BceAI	ACGGC	1 cut(s)	832
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	533, 824
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	4 cut(s)	105, 435, 504, 681
BfrI	CTTAAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	1102
BisI	GCNGC	6 cut(s)	300, 566, 678, 845, 863, 990
BlsI	GCNGC	6 cut(s)	301, 567, 679, 846, 864, 991
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	36, 155, 174
BmiI	GGNNCC	1 cut(s)	778
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	3 cut(s)	422, 439, 694
BpmI	CTGGAG	1 cut(s)	776
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	135, 391
BsaWI	WCCGGW	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 141
Bse1I	ACTGG	2 cut(s)	952, 1003
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	2 cut(s)	135, 391
BseGI	GGATG	4 cut(s)	244, 413, 740, 1106
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	92, 141
BseMII	CTCAG	6 cut(s)	180, 194, 390, 414, 505, 1058
BseNI	ACTGG	2 cut(s)	952, 1003
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	5 cut(s)	286, 577, 856, 874, 976
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	37, 157, 406
BsiSI	CCGG	1 cut(s)	811
BslI	CCNNNNNNNGG	2 cut(s)	92, 141
BsmAI	GTCTC	2 cut(s)	533, 824
BsnI	GGCC	3 cut(s)	37, 157, 406
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	635
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	5 cut(s)	39, 678, 744, 755, 860
BspANI	GGCC	3 cut(s)	37, 157, 406
BspCNI	CTCAG	6 cut(s)	181, 193, 391, 415, 504, 1057
BspLI	GGNNCC	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	1102
BspTI	CTTAAG	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	952, 1003
BssECI	CCNNGG	2 cut(s)	135, 391
BssMI	GATC	1 cut(s)	635
BssSI	CACGAG	1 cut(s)	958
BssT1I	CCWWGG	2 cut(s)	135, 391
Bst2BI	CACGAG	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	3 cut(s)	220, 263, 886
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	6 cut(s)	39, 186, 675, 927, 1079, 1083
BstDEI	CTNAG	7 cut(s)	180, 189, 225, 399, 423, 491, 1044
BstDSI	CCRYGG	1 cut(s)	391
BstEII	GGTNACC	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	244, 413, 740, 1106
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	1 cut(s)	638
BstMAI	GTCTC	2 cut(s)	533, 824
BstMBI	GATC	1 cut(s)	635
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 652, 1103
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	1 cut(s)	188
BstPI	GGTNACC	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	727
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	5 cut(s)	286, 577, 856, 874, 976
BsuRI	GGCC	3 cut(s)	37, 157, 406
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	4 cut(s)	244, 413, 740, 1106
BtsIMutI	CAGTG	4 cut(s)	96, 268, 882, 996
BveI	ACCTGC	1 cut(s)	1102
Cac8I	GCNNGC	6 cut(s)	39, 186, 675, 927, 1079, 1083
CfoI	GCGC	1 cut(s)	994
Cfr13I	GGNCC	3 cut(s)	36, 155, 174
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	5 cut(s)	20, 185, 335, 392, 840
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	7 cut(s)	180, 189, 225, 399, 423, 491, 1044
DpnI	GATC	1 cut(s)	637
DpnII	GATC	1 cut(s)	635
DraIII	CACNNNGTG	1 cut(s)	164
DrdI	GACNNNNNNGTC	1 cut(s)	884
DseDI	GACNNNNNNGTC	1 cut(s)	884
Eco130I	CCWWGG	2 cut(s)	135, 391
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	72, 564
Eco72I	CACGTG	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	911
EcoO65I	GGTNACC	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	135, 391
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	2 cut(s)	135, 391
FaeI	CATG	5 cut(s)	23, 188, 338, 395, 843
FatI	CATG	5 cut(s)	19, 184, 334, 391, 839
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	6 cut(s)	300, 566, 678, 845, 863, 990
FokI	GGATG	3 cut(s)	231, 400, 727
Fsp4HI	GCNGC	6 cut(s)	300, 566, 678, 845, 863, 990
FspBI	CTAG	4 cut(s)	105, 435, 504, 681
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	6 cut(s)	300, 566, 678, 845, 863, 990
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	3 cut(s)	37, 157, 406
HapII	CCGG	1 cut(s)	811
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	994
Hin1II	CATG	5 cut(s)	23, 188, 338, 395, 843
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HinfI	GANTC	5 cut(s)	98, 194, 236, 934, 956
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	5 cut(s)	684, 717, 905, 1040, 1067
Hpy166II	GTNNAC	2 cut(s)	177, 280
Hpy188I	TCNGA	1 cut(s)	808
Hpy188III	TCNNGA	6 cut(s)	376, 443, 519, 827, 898, 1017
Hpy8I	GTNNAC	2 cut(s)	177, 280
HpyAV	CCTTC	7 cut(s)	17, 96, 553, 699, 767, 876, 1025
HpyCH4III	ACNGT	3 cut(s)	220, 263, 886
HpyCH4IV	ACGT	2 cut(s)	122, 318
HpyCH4V	TGCA	8 cut(s)	4, 167, 272, 302, 431, 452, 655, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 652, 1103
HpyF3I	CTNAG	7 cut(s)	180, 189, 225, 399, 423, 491, 1044
HpySE526I	ACGT	2 cut(s)	122, 318
Hsp92II	CATG	5 cut(s)	23, 188, 338, 395, 843
HspAI	GCGC	1 cut(s)	992
Kzo9I	GATC	1 cut(s)	635
LmnI	GCTCC	4 cut(s)	500, 562, 658, 776
Lsp1109I	GCAGC	5 cut(s)	286, 577, 856, 874, 976
LweI	GCATC	3 cut(s)	422, 439, 694
MaeI	CTAG	4 cut(s)	105, 435, 504, 681
MaeII	ACGT	2 cut(s)	122, 318
MaeIII	GTNAC	3 cut(s)	723, 911, 1055
MalI	GATC	1 cut(s)	637
MboI	GATC	1 cut(s)	635
MboII	GAAGA	7 cut(s)	221, 318, 350, 364, 539, 778, 861
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	367, 473, 608
MlyI	GAGTC	2 cut(s)	928, 950
MnlI	CCTC	6 cut(s)	72, 140, 146, 184, 396, 753
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	2 cut(s)	688, 1039
MseI	TTAA	2 cut(s)	456, 663
MslI	CAYNNNNRTG	3 cut(s)	333, 339, 447
MspA1I	CMGCKG	1 cut(s)	568
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	3 cut(s)	58, 652, 1103
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	1 cut(s)	635
NlaIII	CATG	5 cut(s)	23, 188, 338, 395, 843
NlaIV	GGNNCC	1 cut(s)	778
NmuCI	GTSAC	3 cut(s)	723, 911, 1055
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PdmI	GAANNNNTTC	2 cut(s)	688, 1039
PfeI	GAWTC	3 cut(s)	98, 194, 236
PflFI	GACNNNGTC	1 cut(s)	835
PkrI	GCNGC	6 cut(s)	301, 567, 679, 846, 864, 991
PleI	GAGTC	2 cut(s)	928, 950
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	2 cut(s)	928, 950
Ppu21I	YACGTR	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	727
PspCI	CACGTG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	911
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	1 cut(s)	778
PspPI	GGNCC	3 cut(s)	36, 155, 174
PsyI	GACNNNGTC	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	3 cut(s)	333, 339, 447
SaqAI	TTAA	2 cut(s)	456, 663
SatI	GCNGC	6 cut(s)	300, 566, 678, 845, 863, 990
Sau3AI	GATC	1 cut(s)	635
Sau96I	GGNCC	3 cut(s)	36, 155, 174
SchI	GAGTC	2 cut(s)	928, 950
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	3 cut(s)	422, 439, 694
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	3 cut(s)	333, 339, 447
SmlI	CTYRAG	2 cut(s)	662, 936
SmoI	CTYRAG	2 cut(s)	662, 936
SpeI	ACTAGT	1 cut(s)	434
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	3 cut(s)	367, 473, 608
SsiI	CCGC	5 cut(s)	39, 678, 744, 755, 860
SspI	AATATT	1 cut(s)	1039
SspMI	CTAG	4 cut(s)	105, 435, 504, 681
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	2 cut(s)	135, 391
TaaI	ACNGT	3 cut(s)	220, 263, 886
TaiI	ACGT	2 cut(s)	125, 321
TasI	AATT	3 cut(s)	367, 473, 608
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	3 cut(s)	98, 194, 236
Tru1I	TTAA	2 cut(s)	456, 663
Tru9I	TTAA	2 cut(s)	456, 663
TscAI	CASTG	4 cut(s)	96, 268, 889, 1003
TseFI	GTSAC	3 cut(s)	723, 911, 1055
TseI	GCWGC	5 cut(s)	299, 565, 844, 862, 989
Tsp45I	GTSAC	3 cut(s)	723, 911, 1055
TspDTI	ATGAA	2 cut(s)	36, 351
TspGWI	ACGGA	1 cut(s)	890
TspRI	CASTG	4 cut(s)	96, 268, 889, 1003
Tth111I	GACNNNGTC	1 cut(s)	835
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	3 cut(s)	367, 473, 608
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	688, 1039
XspI	CTAG	4 cut(s)	105, 435, 504, 681
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.