Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

743679 .. 745899

Gene Structure 2221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTGGAGGTTCAAGCCTTTTATGCACAAGGAGCCAGCTGGCCTCGAAGGCCGCTCCATTGACGTCGGAACTCTCAAGATTCAGGTGAAGAATGTCATTGCCGAAGGAGGGTTCTCTTGCGTTTACTTAGCTCGGGACCTTGTCCATACCTCAAAGCAGTATGCTTTGAAGCACATCATATGTAATGATGAAGAGTTGCTGGAGTTGGTGATGAAGGAAATCTCCGTCATGAAGTTACTCAGAGGGCATCCCAATGTTGTCACTCTCTATGCCCACGCCATCATGGATTTGGGCCGCACAAAGGAGGCACTCCTTGTCATGGAATATTGTGACAAGTCTCTGGTTACCGTACTCGATAGCAGAGGAGCTGGCTTTTTTGATGAGAAACAGGTCCTTGCAATCTTCAGAGATGTGTGTACTGCAGTTTTTGCAATGCACACACTGTCCCCTCCCATTGCTCATAGGGATTTGAAAGCTGAGAATCTTCTGTTGGGGCCGGATGGACTGTGGAAATTGTGTGATTTTGGAAGCACCTCTACCAACCACAAGCGCTTTGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACATTATCAGAAAGCACACAACACCTGCCTACAGGGCCCCTGAGATGTGGGATCTATTTCGGAGAGAACTTATCAATGAGAAAGTAGACATATGGGCTCTTGGCTGCCTTCTCTTTCGCATTTGCTACTTCAAAAGTGCATTCGATGGAGAGTCAAAGCTGCAGATCTTGAATGGAAACTATCGCATTCCTGAGTTACCTAACTACGGCTCGTCTATTACAGATCTCATCAGAGACATGCTTCAGGCATCACCAGACGACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATGAATTTAGGTGTGGTTTCGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

307

Amino Acids

34.9

Weight (kDa)

5.88

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 289	3e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	28 - 289	1.5e-41	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	619
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	2 cut(s)	52, 295
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	884
AcsI	RAATTY	1 cut(s)	901
AcuI	CTGAAG	3 cut(s)	388, 585, 812
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	351, 418
AfeI	AGCGCT	2 cut(s)	551, 871
AfiI	CCNNNNNNNGG	4 cut(s)	108, 301, 319, 791
AgsI	TTSAA	6 cut(s)	13, 169, 472, 581, 718, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	5 cut(s)	38, 131, 368, 476, 745
AluI	AGCT	5 cut(s)	38, 131, 368, 476, 745
Alw26I	GTCTC	2 cut(s)	342, 813
AlwI	GGATC	1 cut(s)	645
Ama87I	CYCGRG	1 cut(s)	132
Aor51HI	AGCGCT	2 cut(s)	551, 871
AoxI	GGCC	6 cut(s)	40, 49, 292, 494, 621, 884
ApaI	GGGCCC	1 cut(s)	625
ApeKI	GCWGC	2 cut(s)	690, 745
ApoI	RAATTY	1 cut(s)	901
AspLEI	GCGC	2 cut(s)	552, 872
AspS9I	GGNCC	6 cut(s)	136, 292, 391, 494, 621, 622
AsuHPI	GGTGA	3 cut(s)	97, 220, 828
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	2 cut(s)	136, 391
BaeGI	GKGCMC	1 cut(s)	625
BalI	TGGCCA	1 cut(s)	886
BanII	GRGCYC	2 cut(s)	625, 685
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	677, 732
BccI	CCATC	3 cut(s)	287, 494, 725
BceAI	ACGGC	1 cut(s)	808
BcoDI	GTCTC	2 cut(s)	342, 813
BfmI	CTRYAG	3 cut(s)	420, 616, 746
BfoI	RGCGCY	2 cut(s)	553, 873
BfuAI	ACCTGC	1 cut(s)	619
BglI	GCCNNNNNGGC	2 cut(s)	48, 620
BglII	AGATCT	2 cut(s)	750, 808
BisI	GCNGC	4 cut(s)	52, 295, 691, 746
BlsI	GCNGC	4 cut(s)	53, 296, 692, 747
Bme18I	GGWCC	2 cut(s)	136, 391
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	6 cut(s)	136, 292, 391, 494, 621, 622
BmiI	GGNNCC	5 cut(s)	33, 137, 495, 623, 624
BmsI	GCATC	2 cut(s)	256, 842
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 301, 319, 791
Bse3DI	GCAATG	3 cut(s)	96, 438, 453
BseGI	GGATG	2 cut(s)	247, 505
BseLI	CCNNNNNNNGG	4 cut(s)	108, 301, 319, 791
BseMI	GCAATG	3 cut(s)	96, 438, 453
BseMII	CTCAG	4 cut(s)	253, 468, 618, 768
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	2 cut(s)	677, 732
BshFI	GGCC	6 cut(s)	42, 51, 294, 496, 623, 886
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	149, 430
BslI	CCNNNNNNNGG	4 cut(s)	108, 301, 319, 791
BsmAI	GTCTC	2 cut(s)	342, 813
BsmFI	GGGAC	2 cut(s)	149, 430
BsmI	GAATGC	2 cut(s)	725, 771
BsnI	GGCC	6 cut(s)	42, 51, 294, 496, 623, 886
BsoBI	CYCGRG	1 cut(s)	132
Bsp120I	GGGCCC	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	625, 685
Bsp143I	GATC	3 cut(s)	637, 750, 808
BspACI	CCGC	2 cut(s)	52, 295
BspANI	GGCC	6 cut(s)	42, 51, 294, 496, 623, 886
BspCNI	CTCAG	4 cut(s)	252, 469, 619, 769
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	33, 137, 495, 623, 624
BspMAI	CTGCAG	2 cut(s)	424, 750
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	645
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	3 cut(s)	96, 438, 453
BssMI	GATC	3 cut(s)	637, 750, 808
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	349, 444, 507
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	5 cut(s)	36, 40, 370, 864, 868
BstDEI	CTNAG	5 cut(s)	127, 239, 477, 627, 777
BstEII	GGTNACC	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	247, 505
BstH2I	RGCGCY	2 cut(s)	553, 873
BstHHI	GCGC	2 cut(s)	552, 872
BstKTI	GATC	3 cut(s)	640, 753, 811
BstMAI	GTCTC	2 cut(s)	342, 813
BstMBI	GATC	3 cut(s)	637, 750, 808
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 31, 48, 428, 620, 883
BstNSI	RCATGY	1 cut(s)	826
BstPI	GGTNACC	1 cut(s)	343
BstSFI	CTRYAG	3 cut(s)	420, 616, 746
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	2 cut(s)	677, 732
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	3 cut(s)	637, 750, 808
BstYI	RGATCY	3 cut(s)	637, 750, 808
BsuRI	GGCC	6 cut(s)	42, 51, 294, 496, 623, 886
BtsCI	GGATG	2 cut(s)	247, 505
BtsIMutI	CAGTG	1 cut(s)	440
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	5 cut(s)	36, 40, 370, 864, 868
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	2 cut(s)	552, 872
Cfr13I	GGNCC	6 cut(s)	136, 292, 391, 494, 621, 622
Csp6I	GTAC	2 cut(s)	350, 417
CviAII	CATG	5 cut(s)	229, 283, 319, 823, 898
CviQI	GTAC	2 cut(s)	350, 417
DdeI	CTNAG	5 cut(s)	127, 239, 477, 627, 777
DpnI	GATC	3 cut(s)	639, 752, 810
DpnII	GATC	3 cut(s)	637, 750, 808
EaeI	YGGCCR	1 cut(s)	884
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	625, 685
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	2 cut(s)	136, 391
Eco47III	AGCGCT	2 cut(s)	551, 871
Eco57I	CTGAAG	3 cut(s)	388, 585, 812
Eco88I	CYCGRG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	343
EcoO109I	RGGNCCY	4 cut(s)	136, 391, 621, 622
EcoO65I	GGTNACC	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	856
EcoT38I	GRGCYC	2 cut(s)	625, 685
FaeI	CATG	5 cut(s)	232, 286, 322, 826, 901
FaqI	GGGAC	2 cut(s)	149, 430
FatI	CATG	5 cut(s)	228, 282, 318, 822, 897
FauNDI	CATATG	2 cut(s)	179, 677
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	52, 295, 691, 746
FokI	GGATG	2 cut(s)	234, 512
FriOI	GRGCYC	2 cut(s)	625, 685
Fsp4HI	GCNGC	4 cut(s)	52, 295, 691, 746
GlaI	GCGC	2 cut(s)	551, 871
GluI	GCNGC	4 cut(s)	52, 295, 691, 746
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	2 cut(s)	553, 873
HaeIII	GGCC	6 cut(s)	42, 51, 294, 496, 623, 886
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	2 cut(s)	552, 872
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	232, 286, 322, 826, 901
Hin6I	GCGC	2 cut(s)	550, 870
HinP1I	GCGC	2 cut(s)	550, 870
HinfI	GANTC	3 cut(s)	79, 481, 737
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	3 cut(s)	97, 220, 828
Hpy166II	GTNNAC	3 cut(s)	124, 417, 673
Hpy188I	TCNGA	6 cut(s)	68, 242, 407, 596, 648, 818
Hpy188III	TCNNGA	5 cut(s)	76, 134, 229, 754, 776
Hpy8I	GTNNAC	3 cut(s)	124, 417, 673
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	41, 98, 208, 704
HpyCH4III	ACNGT	3 cut(s)	349, 444, 507
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	7 cut(s)	25, 398, 422, 431, 436, 725, 748
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 31, 48, 428, 620, 883
HpyF3I	CTNAG	5 cut(s)	127, 239, 477, 627, 777
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	232, 286, 322, 826, 901
HspAI	GCGC	2 cut(s)	550, 870
Kzo9I	GATC	3 cut(s)	637, 750, 808
LmnI	GCTCC	3 cut(s)	31, 59, 365
Lsp1109I	GCAGC	2 cut(s)	677, 732
LweI	GCATC	2 cut(s)	256, 842
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	5 cut(s)	234, 259, 329, 343, 780
MalI	GATC	3 cut(s)	639, 752, 810
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	3 cut(s)	637, 750, 808
MboII	GAAGA	7 cut(s)	100, 203, 394, 476, 578, 593, 596
MflI	RGATCY	3 cut(s)	637, 750, 808
MhlI	GDGCHC	2 cut(s)	625, 685
MlsI	TGGCCA	1 cut(s)	886
MluCI	AATT	2 cut(s)	512, 901
MluNI	TGGCCA	1 cut(s)	886
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	8 cut(s)	53, 101, 160, 236, 298, 356, 459, 544
Mox20I	TGGCCA	1 cut(s)	886
MscI	TGGCCA	1 cut(s)	886
MseI	TTAA	1 cut(s)	922
MslI	CAYNNNNRTG	2 cut(s)	252, 896
Msp20I	TGGCCA	1 cut(s)	886
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	497
Mva1269I	GAATGC	2 cut(s)	725, 771
MwoI	GCNNNNNNNGC	6 cut(s)	22, 31, 48, 428, 620, 883
NdeI	CATATG	2 cut(s)	179, 677
NdeII	GATC	3 cut(s)	637, 750, 808
NlaIII	CATG	5 cut(s)	232, 286, 322, 826, 901
NlaIV	GGNNCC	5 cut(s)	33, 137, 495, 623, 624
NmuCI	GTSAC	2 cut(s)	259, 329
NspI	RCATGY	1 cut(s)	826
PagI	TCATGA	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	619
PctI	GAATGC	2 cut(s)	725, 771
PfeI	GAWTC	2 cut(s)	79, 481
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	53, 296, 692, 747
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PpuMI	RGGWCCY	2 cut(s)	136, 391
Psp5II	RGGWCCY	2 cut(s)	136, 391
PspEI	GGTNACC	1 cut(s)	343
PspN4I	GGNNCC	5 cut(s)	33, 137, 495, 623, 624
PspOMI	GGGCCC	1 cut(s)	621
PspPI	GGNCC	6 cut(s)	136, 292, 391, 494, 621, 622
PspPPI	RGGWCCY	2 cut(s)	136, 391
PstI	CTGCAG	2 cut(s)	424, 750
PsuI	RGATCY	3 cut(s)	637, 750, 808
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	351, 418
RsaNI	GTAC	2 cut(s)	350, 417
RseI	CAYNNNNRTG	2 cut(s)	252, 896
SaqAI	TTAA	1 cut(s)	922
SatI	GCNGC	4 cut(s)	52, 295, 691, 746
Sau3AI	GATC	3 cut(s)	637, 750, 808
Sau96I	GGNCC	6 cut(s)	136, 292, 391, 494, 621, 622
SchI	GAGTC	1 cut(s)	746
SduI	GDGCHC	2 cut(s)	625, 685
SfaNI	GCATC	2 cut(s)	256, 842
SfcI	CTRYAG	3 cut(s)	420, 616, 746
SfiI	GGCCNNNNNGGCC	1 cut(s)	48
SinI	GGWCC	2 cut(s)	136, 391
SmiMI	CAYNNNNRTG	2 cut(s)	252, 896
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	512, 901
SsiI	CCGC	2 cut(s)	52, 295
SspI	AATATT	1 cut(s)	326
TaaI	ACNGT	3 cut(s)	349, 444, 507
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	45, 354, 729
TasI	AATT	2 cut(s)	512, 901
TatI	WGTACW	1 cut(s)	416
TauI	GCSGC	2 cut(s)	54, 297
TfiI	GAWTC	2 cut(s)	79, 481
Tru1I	TTAA	1 cut(s)	922
Tru9I	TTAA	1 cut(s)	922
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	259, 329
TseI	GCWGC	2 cut(s)	690, 745
Tsp45I	GTSAC	2 cut(s)	259, 329
TspDTI	ATGAA	5 cut(s)	204, 227, 245, 880, 914
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	447
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	136, 391
XapI	RAATTY	1 cut(s)	901
XceI	RCATGY	1 cut(s)	826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	672
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.