RchiOBHm_Chr1g0317891

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005158
Physical Location & Seq
Forward (+)
5416424 .. 5418939
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGGCTCTCTTCACTTCCATCTCTGCCTCCCCCTTCTCCGTCGCGTCGCCGATCGGCCGCTGCAATTTAAACACCTTCAAGCGCTTCACTCATCCCATCATTGCTTCTTCTCTCAGCTCCCCATCTTCCCCGGAATCAAAATCATCATCAGCTCCAAGTCAAACAGTTGTTTCCTCCACCGACACCTCGGCAAATGCTTTTCCCGCCTCCTCCAGACCGCCCGAGCCGAGCTTCAACTACGCCCTTGCCAACGGCAGCCTGTTTGCTCGGTTCGCCAAGTCTGCTGAGTCTTCCATTGAAAGAACAATATTTGACTTCCGATTTTTGGCGCTACTGGCTGTTGGAGGTTCATTGGCTGGTTCACTATTGTGCTTTCTCAATGGTTGTGTTTATATTGTAGATGCCTATAGAGTTTATTGGGGTAGTTGTGTCAAAGGGCATCACACTGGTCAAATGGTTCTGCGACTAGTTGAAGCAATTGATGTTTATCTTGCTGGGACTGTCATGTTAATATTTGGTATGGGATTGTATGGATTATTTATCAGTAATGTGCCTAATGATGTGCCTTCCAACGCTGATCGTGCTTTGAAGGGATCTTCTTTGTTTGGAATGTTTGCTTTGAAGGAGAGGCCTAAATGGATGAAAATTAGCTCACTTGATGAATTGAAGACGAAAGTGGGGCATGTTATTGTCATGATTCTTCTGGTAAAGATGTTTGAGAGGAGCAAGATGGTGCAGATAACCACTGGTTTGGATCTACTGAGCTATTCTGTCTGTATTTTTCTGTCTTCTGCTTCTTTGTACATCCTTCATAATCTACACAAGGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

277

Amino Acids

29.98

Weight (kDa)

9.21

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 103 - 241 1.5e-34 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 58, 204, 218
AclWI GGATC 2 cut(s) 601, 762
AcoI YGGCCR 1 cut(s) 55
AfaI GTAC 1 cut(s) 803
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 7 cut(s) 79, 235, 299, 473, 589, 622, 667
AhlI ACTAGT 1 cut(s) 466
AleI CACNNNNGTG 1 cut(s) 367
AluBI AGCT 5 cut(s) 117, 152, 231, 651, 765
AluI AGCT 5 cut(s) 117, 152, 231, 651, 765
AlwI GGATC 2 cut(s) 601, 762
Ama87I CYCGRG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 2 cut(s) 55, 629
ApeKI GCWGC 2 cut(s) 60, 255
AspLEI GCGC 2 cut(s) 84, 331
AsuC2I CCSGG 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 221
BbsI GAAGAC 3 cut(s) 282, 674, 780
BbvI GCAGC 2 cut(s) 47, 267
BccI CCATC 4 cut(s) 26, 104, 130, 724
BceAI ACGGC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 2 cut(s) 85, 332
BisI GCNGC 3 cut(s) 58, 61, 256
BlsI GCNGC 3 cut(s) 59, 62, 257
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 391, 448
BpiI GAAGAC 3 cut(s) 282, 674, 780
BpmI CTGGAG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 129, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 3 cut(s) 339, 451, 751
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 129, 186
BseGI GGATG 3 cut(s) 91, 645, 804
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 127, 276, 752
BseNI ACTGG 3 cut(s) 339, 451, 751
BseRI GAGGAG 2 cut(s) 199, 736
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 47, 267
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 2 cut(s) 54, 58
BshFI GGCC 2 cut(s) 57, 631
BsiEI CGRYCG 2 cut(s) 54, 58
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 2 cut(s) 57, 631
BsoBI CYCGRG 1 cut(s) 221
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 4 cut(s) 51, 577, 593, 754
BspACI CCGC 3 cut(s) 58, 204, 218
BspANI GGCC 2 cut(s) 57, 631
BspCNI CTCAG 3 cut(s) 126, 277, 753
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 693
BspPI GGATC 2 cut(s) 601, 762
BsrDI GCAATG 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 3 cut(s) 339, 451, 751
BssECI CCNNGG 2 cut(s) 129, 186
BssMI GATC 4 cut(s) 51, 577, 593, 754
Bst4CI ACNGT 2 cut(s) 166, 502
Bst6I CTCTTC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 801
BstDEI CTNAG 3 cut(s) 113, 285, 761
BstF5I GGATG 3 cut(s) 91, 645, 804
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 2 cut(s) 85, 332
BstHHI GCGC 2 cut(s) 84, 331
BstKTI GATC 4 cut(s) 54, 580, 596, 757
BstMBI GATC 4 cut(s) 51, 577, 593, 754
BstMCI CGRYCG 2 cut(s) 54, 58
BstMWI GCNNNNNNNGC 5 cut(s) 203, 272, 281, 335, 581
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 47, 267
BstV2I GAAGAC 3 cut(s) 282, 674, 780
BstX2I RGATCY 2 cut(s) 593, 754
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 2 cut(s) 593, 754
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 57, 631
BtsCI GGATG 3 cut(s) 91, 645, 804
BtsIMutI CAGTG 2 cut(s) 444, 744
CciI TCATGA 1 cut(s) 693
CfoI GCGC 2 cut(s) 84, 331
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 802
CviAII CATG 3 cut(s) 505, 683, 694
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 3 cut(s) 113, 285, 761
DpnI GATC 4 cut(s) 53, 579, 595, 756
DpnII GATC 4 cut(s) 51, 577, 593, 754
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EclXI CGGCCG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 631
Eco47III AGCGCT 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 221
FaeI CATG 3 cut(s) 508, 686, 697
FaiI YATR 8 cut(s) 393, 408, 506, 521, 531, 684, 695, 813
FaqI GGGAC 1 cut(s) 511
FatI CATG 3 cut(s) 504, 682, 693
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 58, 61, 256
FokI GGATG 3 cut(s) 78, 652, 791
Fsp4HI GCNGC 3 cut(s) 58, 61, 256
FspBI CTAG 1 cut(s) 467
GlaI GCGC 2 cut(s) 83, 330
GluI GCNGC 3 cut(s) 58, 61, 256
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 1 cut(s) 196
HaeII RGCGCY 2 cut(s) 85, 332
HaeIII GGCC 2 cut(s) 57, 631
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 84, 331
Hin1II CATG 3 cut(s) 508, 686, 697
Hin6I GCGC 2 cut(s) 82, 329
HinP1I GCGC 2 cut(s) 82, 329
HinfI GANTC 3 cut(s) 134, 287, 697
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 2 cut(s) 213, 694
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 2 cut(s) 44, 49
HpyAV CCTTC 7 cut(s) 43, 85, 576, 583, 616, 818, 821
HpyCH4III ACNGT 2 cut(s) 166, 502
HpyCH4V TGCA 2 cut(s) 63, 736
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 272, 281, 335, 581
HpyF3I CTNAG 3 cut(s) 113, 285, 761
Hsp92II CATG 3 cut(s) 508, 686, 697
HspAI GCGC 2 cut(s) 82, 329
Kzo9I GATC 4 cut(s) 51, 577, 593, 754
LmnI GCTCC 3 cut(s) 122, 157, 723
LpnPI CCDG 9 cut(s) 144, 226, 272, 320, 342, 432, 480, 689, 732
Lsp1109I GCAGC 2 cut(s) 47, 267
LweI GCATC 2 cut(s) 391, 448
MaeI CTAG 1 cut(s) 467
MalI GATC 4 cut(s) 53, 579, 595, 756
MboI GATC 4 cut(s) 51, 577, 593, 754
MboII GAAGA 7 cut(s) 99, 117, 282, 588, 679, 692, 780
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 2 cut(s) 593, 754
MluCI AATT 4 cut(s) 64, 477, 645, 662
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 322, 594
MnlI CCTC 8 cut(s) 37, 184, 196, 217, 220, 338, 621, 714
MseI TTAA 2 cut(s) 68, 509
MslI CAYNNNNRTG 1 cut(s) 367
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 477
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 203, 272, 281, 335, 581
NciI CCSGG 1 cut(s) 131
NdeII GATC 4 cut(s) 51, 577, 593, 754
NlaIII CATG 3 cut(s) 508, 686, 697
NmeAIII GCCGAG 2 cut(s) 167, 252
NspI RCATGY 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 367
PagI TCATGA 1 cut(s) 693
PceI AGGCCT 1 cut(s) 631
PfeI GAWTC 2 cut(s) 134, 697
PkrI GCNGC 3 cut(s) 59, 62, 257
Ple19I CGATCG 1 cut(s) 54
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 494
PsuI RGATCY 2 cut(s) 593, 754
PvuI CGATCG 1 cut(s) 54
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 367
SaqAI TTAA 2 cut(s) 68, 509
SatI GCNGC 3 cut(s) 58, 61, 256
Sau3AI GATC 4 cut(s) 51, 577, 593, 754
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 131
SetI ASST 8 cut(s) 77, 119, 154, 188, 233, 349, 653, 767
SfaNI GCATC 2 cut(s) 391, 448
SfcI CTRYAG 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 4 cut(s) 64, 477, 645, 662
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 3 cut(s) 58, 204, 218
SspI AATATT 2 cut(s) 309, 513
SspMI CTAG 1 cut(s) 467
StuI AGGCCT 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 166, 502
TasI AATT 4 cut(s) 64, 477, 645, 662
TatI WGTACW 1 cut(s) 801
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 134, 697
Tru1I TTAA 2 cut(s) 68, 509
Tru9I TTAA 2 cut(s) 68, 509
TscAI CASTG 2 cut(s) 451, 751
TseI GCWGC 2 cut(s) 60, 255
TspDTI ATGAA 4 cut(s) 339, 656, 675, 800
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 451, 751
XceI RCATGY 1 cut(s) 686
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.