RchiOBHm_Chr1g0319681

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005993
Physical Location & Seq
Forward (+)
7306175 .. 7306981
807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACACAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

88

Amino Acids

10.05

Weight (kDa)

9.72

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 76 1.6e-10 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 22, 191, 260
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BglII AGATCT 1 cut(s) 170
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BshFI GGCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 170
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 78, 170
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstKTI GATC 2 cut(s) 81, 173
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 78, 170
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 85
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 40, 76
CviJI RGCY 3 cut(s) 85, 205, 264
CviKI_1 RGCY 3 cut(s) 85, 205, 264
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 172
DpnII GATC 2 cut(s) 78, 170
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 43, 79
FaiI YATR 5 cut(s) 41, 77, 122, 138, 156
FatI CATG 2 cut(s) 39, 75
FbaI TGATCA 1 cut(s) 78
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 2 cut(s) 43, 79
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 76, 174
HpyAV CCTTC 2 cut(s) 96, 254
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 2 cut(s) 43, 79
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 170
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 3 cut(s) 56, 67, 159
LweI GCATC 1 cut(s) 16
MalI GATC 2 cut(s) 80, 172
MboI GATC 2 cut(s) 78, 170
MboII GAAGA 2 cut(s) 46, 67
MflI RGATCY 1 cut(s) 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 51, 195, 240
NdeII GATC 2 cut(s) 78, 170
NlaIII CATG 2 cut(s) 43, 79
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 78, 170
SchI GAGTC 1 cut(s) 18
SetI ASST 2 cut(s) 75, 99
SfaNI GCATC 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 85
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 134
TatI WGTACW 1 cut(s) 42
XceI RCATGY 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.