Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

8563193 .. 8564790

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGCCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTAGAGCTGGAATATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCCAAATTTCAGGAGCTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGATAGTTCATGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGATCATAAAAGCTTGTGCTTTGAGGGGAATTAACATGAGTGGAGGGCAAAAGCAAAGGATTCAGCTAGCTCGAGCTGTCTATAGTGATGCTGATATCTACCTCCTAGATGACCCATTTAGTGCAGTAGATGCACACACTGCAGCAATTCTGTTTCATGATTGTGTCATGGATGCTCTAGCAAAGAAGACTATGATTCTTGTGACTCATCAAGTAGAATTTCTGTCAGAAGTTGACAAAATTCTGGTATGCTTTGGGTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

270

Amino Acids

29.74

Weight (kDa)

5.62

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	105 - 222	4e-13	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	4 cut(s)	244, 423, 764, 786
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	52, 211, 308
AluBI	AGCT	9 cut(s)	95, 232, 258, 377, 434, 560, 613, 617, 623
AluI	AGCT	9 cut(s)	95, 232, 258, 377, 434, 560, 613, 617, 623
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	618
ApeKI	GCWGC	1 cut(s)	689
ApoI	RAATTY	4 cut(s)	244, 423, 764, 786
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	231
AsuNHI	GCTAGC	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	740
BbvI	GCAGC	1 cut(s)	701
BccI	CCATC	1 cut(s)	244
BciVI	GTATCC	3 cut(s)	53, 300, 474
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	5 cut(s)	35, 329, 614, 653, 725
BfmI	CTRYAG	2 cut(s)	628, 687
BfuI	GTATCC	3 cut(s)	53, 300, 474
BisI	GCNGC	1 cut(s)	690
BlsI	GCNGC	1 cut(s)	691
BmcAI	AGTACT	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	451
BmsI	GCATC	4 cut(s)	405, 625, 667, 709
BmtI	GCTAGC	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	701
BsgI	GTGCAG	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	618
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	153, 175, 549
BspHI	TCATGA	2 cut(s)	499, 703
BspLI	GGNNCC	1 cut(s)	451
BspMAI	CTGCAG	1 cut(s)	691
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	3 cut(s)	153, 175, 549
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	2 cut(s)	677, 686
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	724
BstKTI	GATC	3 cut(s)	156, 178, 552
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	153, 175, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 686
BstSFI	CTRYAG	2 cut(s)	628, 687
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	701
BstV2I	GAAGAC	1 cut(s)	740
BsuI	GTATCC	3 cut(s)	53, 300, 474
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	615
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	2 cut(s)	499, 703
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	5 cut(s)	109, 500, 583, 704, 715
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	155, 177, 551
DpnII	GATC	3 cut(s)	153, 175, 549
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	618
EcoRV	GATATC	1 cut(s)	643
FaeI	CATG	5 cut(s)	112, 503, 586, 707, 718
FatI	CATG	5 cut(s)	108, 499, 582, 703, 714
Fnu4HI	GCNGC	1 cut(s)	690
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	1 cut(s)	690
FspBI	CTAG	5 cut(s)	35, 329, 614, 653, 725
GluI	GCNGC	1 cut(s)	690
Hin1II	CATG	5 cut(s)	112, 503, 586, 707, 718
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	4 cut(s)	296, 607, 742, 751
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	3 cut(s)	325, 365, 781
Hpy188I	TCNGA	4 cut(s)	66, 250, 315, 775
Hpy188III	TCNNGA	4 cut(s)	293, 429, 500, 704
Hpy8I	GTNNAC	3 cut(s)	325, 365, 781
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	71, 356, 671, 680, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 686
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	112, 503, 586, 707, 718
Kzo9I	GATC	3 cut(s)	153, 175, 549
LmnI	GCTCC	3 cut(s)	105, 237, 431
LpnPI	CCDG	7 cut(s)	132, 147, 306, 363, 381, 414, 776
Lsp1109I	GCAGC	1 cut(s)	701
LweI	GCATC	4 cut(s)	405, 625, 667, 709
MaeI	CTAG	5 cut(s)	35, 329, 614, 653, 725
MaeIII	GTNAC	2 cut(s)	3, 748
MalI	GATC	3 cut(s)	155, 177, 551
MboI	GATC	3 cut(s)	153, 175, 549
MboII	GAAGA	3 cut(s)	12, 559, 745
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	8 cut(s)	244, 303, 351, 423, 576, 693, 764, 786
MlyI	GAGTC	1 cut(s)	745
MnlI	CCTC	5 cut(s)	72, 130, 564, 584, 659
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	677, 686
NdeII	GATC	3 cut(s)	153, 175, 549
NheI	GCTAGC	1 cut(s)	613
NlaIII	CATG	5 cut(s)	112, 503, 586, 707, 718
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	3, 748
PaeR7I	CTCGAG	1 cut(s)	618
PagI	TCATGA	2 cut(s)	499, 703
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	296, 607, 742
PkrI	GCNGC	1 cut(s)	691
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	365
PspXI	VCTCGAGB	1 cut(s)	618
PstI	CTGCAG	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	1 cut(s)	690
Sau3AI	GATC	3 cut(s)	153, 175, 549
Sau96I	GGNCC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	1 cut(s)	745
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	4 cut(s)	405, 625, 667, 709
SfcI	CTRYAG	2 cut(s)	628, 687
Sfr274I	CTCGAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	365
SlaI	CTCGAG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	2 cut(s)	259, 618
SmoI	CTYRAG	2 cut(s)	259, 618
Sse9I	AATT	8 cut(s)	244, 303, 351, 423, 576, 693, 764, 786
SspMI	CTAG	5 cut(s)	35, 329, 614, 653, 725
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	438, 619
TasI	AATT	8 cut(s)	244, 303, 351, 423, 576, 693, 764, 786
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	296, 607, 742
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	2 cut(s)	3, 748
TseI	GCWGC	1 cut(s)	689
Tsp45I	GTSAC	2 cut(s)	3, 748
TspDTI	ATGAA	2 cut(s)	488, 692
TspRI	CASTG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	4 cut(s)	244, 423, 764, 786
XhoI	CTCGAG	1 cut(s)	618
XspI	CTAG	5 cut(s)	35, 329, 614, 653, 725
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.